Bio-Maxd

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Bio-Maxd.ppd  view on Meta::CPAN

<SOFTPKG NAME="Bio-Maxd" VERSION="0,02,0,0">
	<TITLE>Bio-Maxd</TITLE>
	<ABSTRACT>methods for uploading and retrieving data to/from a maxd (MySQL) database</ABSTRACT>
	<AUTHOR>Jaime Prilusky &lt;Jaime.Prilusky@weizmann.ac.il&gt;</AUTHOR>
	<IMPLEMENTATION>
		<DEPENDENCY NAME="DBD-mysql" VERSION="2,1,0,0" />
		<DEPENDENCY NAME="DBI" VERSION="1,29,0,0" />
		<DEPENDENCY NAME="HTML-Template" VERSION="2,5,0,0" />
		<OS NAME="darwin" />
		<ARCHITECTURE NAME="darwin" />
		<CODEBASE HREF="" />
	</IMPLEMENTATION>
</SOFTPKG>

Makefile.PL  view on Meta::CPAN

use ExtUtils::MakeMaker;
# See lib/ExtUtils/MakeMaker.pm for details of how to influence
# the contents of the Makefile that is written.

my @ppd;
if ($] >= 5.00503) {
  @ppd = (
    AUTHOR    => 'Jaime Prilusky <Jaime.Prilusky@weizmann.ac.il>',
    ABSTRACT  => 'methods for uploading and retrieving data to/from a maxd (MySQL) database'
  );
}

WriteMakefile(
    'NAME'		=> 'Bio::Maxd',
    'VERSION_FROM'	=> 'lib/Bio/Maxd.pm',
    'PREREQ_PM' => {
      'DBI'  => 1.29,
      'DBD::mysql'  => 2.1,
      'HTML::Template' => 2.5

README  view on Meta::CPAN

Bio::Maxd provides methods for uploading and retrieving
data to/from a maxd (MySQL) database.

"maxd" is a data warehouse and visualization environment for 
microarray expression data developed by the Microarray Group at
Manchester Bioinformatics (http://www.bioinf.man.ac.uk/microarray/)

Prerequisites:

      DBI             1.29
      DBD::mysql      2.1

lib/Bio/Maxd.pm  view on Meta::CPAN

  use Bio::Maxd;
  my $maxd_db = new Bio::Maxd (-user=>'user', -pass=>'pass', 
                               -host=>'host', -dbase=>'database');
  $maxd_db->load_file(-file=>'path_to_data_file',
                  -experiment=>'experimentName', -array_type=>'geneChipName');
  $maxd_db->disconnect();

=head1 DESCRIPTION

B<Bio::Maxd> provides methods for uploading and retrieving
data to/from a maxd (MySQL) database.

"maxd" is a data warehouse and visualization environment for microarray
expression data developed by the Microarray Group at
Manchester Bioinformatics (http://www.bioinf.man.ac.uk/microarray/)

=head2 Bio::Maxd METHODS

B<new()>, This is the constructor for B<Bio::Maxd>.