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Build.PL  view on Meta::CPAN

sub ACTION_deploy {

    require CPAN::Uploader;
    my $self = shift;
    $self->depends_on("dist");

    my $tarball = $self->dist_dir() . '.tar.gz';
    die "tarball not found"
        if (! -e $tarball);
    print "Uploading $tarball\n";
    CPAN::Uploader->upload_file( $tarball, {
        user     => $ENV{PAUSE_USER},
        password => $ENV{PAUSE_PASS},
    } );
}
SUBCLASS


my $builder = $deployer->new(
    module_name        => 'Bio::CIPRES',
    license            => 'GPL_3',

lib/Bio/CIPRES.pm  view on Meta::CPAN

documentation (not covered here). Returns a L<Bio::CIPRES::Job> object.

Most params are passed as simple key => value pairs of strings based on the
CIPRES tool documentation. B<One important nuance>, however, is in the
handling of input files. If the contents of a input file are to be passed in
as a scalar, they should be provided directly as the scalar value to the
appropriate key:

    my $job = $ua->submit_job( 'input.infile_' => $in_contents );

However, if the input file is to be uploaded by filename, it should be passed
as an array reference:

    my $job = $ua->submit_job( 'input.infile_' => [$in_filename] );

Failure to understand the difference will result in errors either during job
submission or during the job run.

=item B<list_jobs>

    for my $job ( $ua->list_jobs ) {