Alvis-QueryFilter

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lib/Alvis/Treetagger.pm  view on Meta::CPAN

         . " < $FIFO.in > $FIFO.out";
    if ( defined($errorFile) ) {
	$execline .= " 2>$errorFile ";
    }
    exec($execline);
  }
  sleep(1);
  
  if ( $verbose ) { print STDERR "Starting fifo input $FIFO.in\n"; }
  open(FI,">$FIFO.in");
  select((select(FI), $| = 1)[0]);

  #  send some stuff down the pipe to warm it up;
  #  note we add to extra "\n." two evey message
  #  to force TreeTagger to run the buffer
  print FI "Start\nup\nnow\n.\n.\n.\n";
  
  if ( $verbose ) { print STDERR "Starting fifo output $FIFO.out\n"; }
  open(FO,"<$FIFO.out");
  
  $_=<FO>; $_.=<FO>; $_.=<FO>; $_.=<FO>;

t/test/resources/onto_nodes  view on Meta::CPAN

point mutation	node_37 
positive regulator	node_21 
presence of glucose	node_14 
promoter activation	node_24 
promoter recognition	node_24 
promoter recognition specificity	node_24 
promoter region	node_24 
promoter region of a gene	node_24 
promoter region of the operon	node_24 
promoter regions	node_24 
promoter selection	node_24 
promoter selectivity	node_24 
promoter sequence of this gene	node_24 
promoter sequences	node_24 
promoter site	node_24 
promoter specificity	node_24 
promoter strength	node_24 
promoter structure	node_24 
promoter utilization	node_24 
promotor region	node_24 
reading frame	node_27 
region of the genome	node_24 

t/test/resources/terms  view on Meta::CPAN

dipicolinic acid 	dipicolinic acid
dipicolinic acid synthetase 	dipicolinic acid synthetase
dipteran larva 	dipteran larva
direct evidence 	direct evidence
direct interaction with the transcription 	direct interaction with the transcription
direction of replication 	direction of replication
direction of the transcription 	transcription direction
direct repeat sequence 	direct repeat sequence
direct repression of transcription 	direct repression of transcription
direct role 	direct role
direct selection 	direct selection
direct transcription 	direct transcription
disassembly of protein complex 	disassembly of protein complex
discontinuous elongation 	discontinuous elongation
dissociation constant 	dissociation constant
distal gene 	distal gene
distal gene of an operon 	distal gene of an operon
distinct pathway 	distinct pathway
distinct promoter 	distinct promoter
distinct site 	distinct site
divalent cation 	divalent cation

t/test/resources/terms  view on Meta::CPAN

polymerase chain reaction 	polymerase chain reaction
polynucleotide phosphorylase 	polynucleotide phosphorylase
polyunsaturated fatty acid 	polyunsaturated fatty acid
pool ratio 	pool ratio
positive autoregulation 	positive autoregulation
positive control 	positive control
positive effect 	positive effect
positive factor 	positive factor
positive feedback loop 	positive feedback loop
positive regulator 	positive regulator
positive selection 	positive selection
positive selection vector 	positive selection vector
positive transcription factor 	positive transcription factor
possible helix-turn-helix motif 	possible helix-turn-helix motif
possible role 	possible role
possible target region 	possible target region
post-exponential phase 	post-exponential-phase
posttranscriptional control 	posttranscriptional control
post-transcriptional level 	post-transcriptional level
posttranscriptional regulation 	posttranscriptional regulation
post-translational	post-translational
potassium chloride 	potassium chloride

t/test/resources/terms  view on Meta::CPAN

promoter mutation 	promoter mutation
promoter of the gene 	gene promoter
promoter probe plasmids 	promoter-probe plasmids
promoter-probe plasmids 	promoter-probe plasmids
promoter probe vector 	promoter probe vector
promoter-probe vector 	promoter probe vector
promoter recognition specificity 	promoter recognition specificity
promoter region of a gene 	promoter region of a gene
promoter region of the operon 	promoter region of the operon
promoter region 	promoter region
promoter selection 	promoter selection
promoter selectivity 	promoter selectivity
promoter sequence of this gene 	promoter sequence of this gene
promoter sequence recognition 	promoter recognition
promoter site 	promoter site
promoter specificity 	promoter specificity
promoter strength 	promoter strength
promoter structure 	promoter structure
promoter type 	promoter type
promoter utilization 	promoter utilization
promotor region 	promotor region
propagation of the transcription bubble 	propagation of the transcription bubble

t/test/resources/terms  view on Meta::CPAN

second sequence 	second sequence
second-site suppressor 	second-site suppressor
second stage 	second stage
secretion of heterologous protein 	secretion of heterologous protein
secretion signal 	secretion signal
secretion vector 	secretion vector
secretory precursor protein 	secretory precursor protein
secretory preproteins 	secretory preproteins
secretory protein 	secretory protein
sedimenting nucleoid 	sedimenting-nucleoid
selectable marker 	selectable marker
selective association 	selective association
selective medium 	selective medium
selective transcription 	selective transcription
sensor kinase 	sensor kinase
sensor-kinase	sensor kinase
sensory transduction event 	sensory transduction event
septal membrane 	septal membrane
septum formation 	septum formation
sequence alignment 	sequence alignment
sequence alteration 	sequence alteration
sequence analysis of deletion 	sequence analysis of deletion
sequence analysis 	sequence analysis
sequence analysis	sequence analysis

t/test/resources/terms  view on Meta::CPAN

staphylococcal nuclease 	staphylococcal nuclease
staphylococcal phage 	staphylococcal phage
starch induction 	starch induction
start codon 	start codon
start of endospore formation 	start of endospore formation
start of sporulation 	start of sporulation
start point of transcription 	start point of transcription
start-point of transcription 	start point of transcription
start point 	start-point
start site of transcription 	start site of transcription
start-site selection 	start-site selection
start site 	start-site
starvation condition 	starvation condition
stat gene 	stat gene
stationary phase cell 	stationary-phase cell
stationary-phase cell 	stationary phase cell
stationary phase of growth 	stationary phase of growth
stationary-phase regulon 	stationary-phase regulon
stationary phase 	stationary phase
stationary-phase	stationary phase
stationary-phase viability 	stationary-phase viability