Bio-SamTools
view release on metacpan or search on metacpan
./Build test
(sudo) ./Build install
TROUBLESHOOTING:
If you encounter problems during compiling, you may need to edit
Build.PL so that extra_compiler_flags matches the CFLAGS and DFLAGS
settings in the Samtools Makefile. Here are some common problems:
1. When building this module, you get an error like the following:
relocation R_X86_64_32 against `a local symbol' can not be used when
making a shared object; recompile with -fPIC
To fix this, edit the Makefile in the Samtools distribution by adding
"-fPIC" to the CFLAGS line. While you're at it, you may also wish to
get rid of a bunch of unused variable warnings that appears under
recent versions of gcc. The modified CFLAGS will look like this
CFLAGS= -g -Wall -Wno-unused -Wno-unused-result -O2 -fPIC #-m64 #-arch ppc
Then do "make clean; make" in the Samtools directory to recompile the
( run in 0.439 second using v1.01-cache-2.11-cpan-71847e10f99 )