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MANIFEST  view on Meta::CPAN

# This file was automatically generated by Dist::Zilla::Plugin::Manifest v5.025.
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LICENSE
MANIFEST
MANIFEST.SKIP
META.yml
Makefile.PL
README
dist.ini
icon.png
lib/App/AFNI/SiemensPhysio.pm
lib/bin/siemphysdat
octave-workspace
prepareForDemo.bash
readme.mkdn
removeDemo.bash
t/times.t

lib/bin/siemphysdat  view on Meta::CPAN

RVT from AFNI's RetroTS ready for C<afni_proc.py> or C<3dretroicor>

=back



=head1 DESCRIPTION

=begin html

<img src="https://raw.githubusercontent.com/LabNeuroCogDevel/siemphysdat/master/icon.png"></img>

=end html

B<siemphysdat> will chop two physio files given timing of DICOMS in MRdir and save in a format RetroTS.m likes.


=head2 SEE ALSO

App::AFNI::SiemensPhysio

readme.mkdn  view on Meta::CPAN

# siemphysdat <img height=100 widht=100 align=right src=https://raw.githubusercontent.com/LabNeuroCogDevel/siemphysdat/master/icon.png>

Utility to chop physio measures (voltages) from Siemens Physiologic Monitoring Unit (PMU) and generate respiration volume per time (RVT) regressors for a single MR protocol with AFNI's `RetroTS.m`

This is for you if you want  `1D` inputs for `3dretroicor` or `afni_proc.py` (`ricor` block) and have physio recordings (`*.resp` and `*.puls`) files the look like [this](data/wpc4951_10824_20111108_110811.puls):

```
1 2 40 280 ...
ECG  Freq Per: 0 0
PULS Freq Per: 74 807
RESP Freq Per: 20 2860