Bio-EUtilities

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t/data/eutils/egquery.xml  view on Meta::CPAN

             </ResultItem>

             <ResultItem>
                  <DbName>unists</DbName>
                  <MenuName>UniSTS</MenuName>
                  <Count>61</Count>
                  <Status>Ok</Status>
             </ResultItem>

             <ResultItem>
                  <DbName>popset</DbName>
                  <MenuName>PopSet</MenuName>
                  <Count>0</Count>
                  <Status>Term or Database is not found</Status>
             </ResultItem>

             <ResultItem>
                  <DbName>geo</DbName>
                  <MenuName>GEO Profiles</MenuName>
                  <Count>19278</Count>
                  <Status>Ok</Status>

t/data/eutils/einfo.xml  view on Meta::CPAN

			<Description>Free full text articles in PMC</Description>
			<DbTo>pmc</DbTo>
		</Link>
		<Link>
			<Name>pubmed_pmc_refs</Name>
			<Menu>Cited in PMC</Menu>
			<Description>PubMed links associated with PMC</Description>
			<DbTo>pmc</DbTo>
		</Link>
		<Link>
			<Name>pubmed_popset</Name>
			<Menu>PopSet Links</Menu>
			<Description>Published population set</Description>
			<DbTo>popset</DbTo>
		</Link>
		<Link>
			<Name>pubmed_probe</Name>
			<Menu>Probe Links</Menu>
			<Description>Related Probe entry</Description>
			<DbTo>probe</DbTo>
		</Link>
		<Link>
			<Name>pubmed_protein</Name>
			<Menu>Protein Links</Menu>

t/data/eutils/einfo_dbs.xml  view on Meta::CPAN

	<DbName>geo</DbName>
	<DbName>gds</DbName>
	<DbName>homologene</DbName>
	<DbName>journals</DbName>
	<DbName>mesh</DbName>
	<DbName>ncbisearch</DbName>
	<DbName>nlmcatalog</DbName>
	<DbName>omia</DbName>
	<DbName>omim</DbName>
	<DbName>pmc</DbName>
	<DbName>popset</DbName>
	<DbName>probe</DbName>
	<DbName>proteinclusters</DbName>
	<DbName>pcassay</DbName>
	<DbName>pccompound</DbName>
	<DbName>pcsubstance</DbName>
	<DbName>snp</DbName>
	<DbName>taxonomy</DbName>
	<DbName>toolkit</DbName>
	<DbName>unigene</DbName>
	<DbName>unists</DbName>

t/release-EUtilities.t  view on Meta::CPAN

                                        -api_key    => $api_key,
                                        -email      => $email
                                          );

        eval {$response = $eutil->get_Response; };
        skip("EInfo HTTP error:$@", 1) if $@;

        my @db = sort qw(pubmed  protein  nucleotide  nuccore  nucgss  nucest  structure
        genome  books  cancerchromosomes  cdd  domains  gene  genomeprj  gensat
        geo  gds  homologene  journals  mesh  ncbisearch  nlmcatalog  omia  omim
        pmc  popset  probe  pcassay  pccompound  pcsubstance  snp  taxonomy toolkit
        unigene  unists);

        my @einfo_dbs = sort $eutil->get_databases;
        cmp_ok(scalar(@einfo_dbs), '>=', scalar(@db), 'All EInfo databases');
    }
}


# ELink - normal (single ID array) - single db - ElinkData tests