Bio-FastParsers
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test/all_double_std.out view on Meta::CPAN
2 ! 13218.3 0.0 0 0 767 6705 .] 643 6574 .] 640 6574 .] 1.00
Alignments for each domain:
== domain 1 score: 1554.0 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
cqfrsvmrmdymvyfsfftwilipl+vmcaiyldifyvirnkl+qnfs+sk+tgafygrefktakslflvlflfalswlplsiinci+yfpq++lylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
Ailuropoda_melanoleuca 1 CQFRSVMRMDYMVYFSFFTWILIPLIVMCAIYLDIFYVIRNKLNQNFSGSKDTGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCITYFPQILLYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWL...
9****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 13218.3 bits; conditional E-value: 0
Meredith169AA 767 pdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntnaglYnqsDivahflssSssvidaLqykleGtssltrkRglKlAtalslsnkfvegnhdstiSltkknmeasvtttakvqipilrmnfkqelnGntkskptvsssielkYdfnspklystakGavdhklslesltsyfsiesstkgdikgsvlseysgtiaseastYlnskgtrssvklqgaskv...
df+vlst+n+I+iPAmGNiTYdFSFKS +iTLntn+glYnqsDivahfl+sSssv+daLqykleGtssltrkR lKlAtalslsnkfvegnhdstiSltkknmeasvtt+akvqipilrmnfkqelnGntkskptvs siel+Yd+ns++ ysta+G+v hk++lesltsyfsiesstkgdikgsv+s+ysgtiaseastYlnsk+trssvklqgaskv...
Ailuropoda_melanoleuca 643 KDFQVLSTPNDIFIPAMGNITYDFSFKSGIITLNTNVGLYNQSDIVAHFLTSSSSVTDALQYKLEGTSSLTRKRDLKLATALSLSNKFVEGNHDSTISLTKKNMEASVTTSAKVQIPILRMNFKQELNGNTKSKPTVSASIELTYDLNSAEQYSTATGTVSHKFNLESLTSYFSIESSTKGDIKGSVFSKYSGTIASEASTYLNSKSTRSSVKLQGASKV...
69**************************************************************************************************************************************************************************************************************************...
>> Abrocoma_bennettii
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3876.6 2.8 0 0 1 1789 [. 1 1788 [. 1 1795 [. 1.00
2 ! 4102.0 13.3 0 0 2038 4546 .. 2037 4459 .. 2026 4465 .. 0.99
3 ! 4943.5 15.5 0 0 4778 6705 .] 4691 6619 .] 4683 6619 .] 1.00
Alignments for each domain:
== domain 1 score: 3876.6 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaa...
c+f +m+m+ymv+fsfftwi+iplvvmcaiyl+if+virnklsqn+s+sketgafygref+takslflvlflfal+wlplsiinc++yfp+ +++lgillsh i gnal ilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlc isldrywavsraleynskrtprrikciiltvwliaa...
Abrocoma_bennettii 1 CSFLPTMSMEYMVFFSFFTWIFIPLVVMCAIYLNIFHVIRNKLSQNLSASKETGAFYGREFRTAKSLFLVLFLFALCWLPLSIINCALYFPDDIMFLGILLSHXXXXXXILGNALGILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCXISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAA...
99******************************************************************************************************************************************************************************************************************************...
== domain 2 score: 4102.0 bits; conditional E-value: 0
Meredith169AA 2038 qkvnewfsrsdeiltsddshdggsekidllasdphdaliceservhskpvesniedkifgktyrrkaslpnlshiteitqerpltnklkrkrrttsglhpedfikkvdlavvqktpekinegtdqngqvmnitnnghenetkgdyvqkeknanpteslekesafrtkaepisssisnmelelnihsskapkknrlrrksstrhihalelvvsrnpsppnhtelq...
vnewfsrsde+ ts+d +d + ek+dl asdp++a++c++ r ++ + + ++edk+fgktyrrk sl nlsh + +tqe+plt+++krkrrt s+lhpedfikk+ la +qktpek ++g++q++qv++i nn+ enet+g vq+ +n++p++slekes+ + +ep+sss ++mele+n++ ap+ nrlr++ss+r+++ + spp h elq...
Abrocoma_bennettii 2037 XXVNEWFSRSDEMETSEDGCDWEXEKTDLKASDPQRAVTCATVRGCPSAGKGSVEDKVFGKTYRRKGSLANLSHSAXVTQECPLTSTVKRKRRTLSCLHPEDFIKKAGLAAAQKTPEKDTQGMKQSSQVTSIPNNN-ENETEGVAVQRXQNPSPVQSLEKESVPGMGTEPQSSSGNSMELEWNVCPPGAPQGNRLRKRSSARQVP--------HLSPPGHPELQ...
679**********************************************************************************************************************************985.9*******************************************************************........779********...
== domain 3 score: 4943.5 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssg+ksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPi+AKDLVIEPDVRPaF+s...
Abrocoma_bennettii 4691 XXNSSGMKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSEKWSECARVKSLEAVITNLTQGEEYLFRVVAVNEKGRSDPRSLAVPIIAKDLVIEPDVRPAFSS...
57******************************************************************************************************************************************************************************************************************************...
test/all_double_std.out view on Meta::CPAN
2 ! 11808.5 45.4 0 0 580 6705 .] 580 6642 .] 573 6642 .] 0.99
Alignments for each domain:
== domain 1 score: 757.3 bits; conditional E-value: 4.1e-231
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwli...
c+f+sv+rmdymvyfsfftwil+plv+mcaiy+difyvirn+ +q fs+sketgafygrefktaksl+l+lflfa+swlplsiinc++yfp+++l+lgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfr+twcevylaldvlfctssivhlcaisldryw+vsraleynskrtprrik+iiltvwli...
Aepyprymnus_rufescens 1 CRFSSVIRMDYMVYFSFFTWILVPLVIMCAIYMDIFYVIRNNXRQXFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINCVSYFPKELLCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLI...
9*****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 11808.5 bits; conditional E-value: 0
Meredith169AA 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLn...
pltipemtlpytttp+++dfslwe+tgLK+fLkTtKQsfDLsv+aqYkKN d+h +p+pL+++y++++ +in++++hfek+rdk+ldfltksYn+ak+kfdkykve+Sl+klprt++ipgY+iP+ni vspft+em+a+gy++Pke++tp+ftipg+gfs+psyt+vlple+pvLhvp++l+kl+Lpdf+++++s++I iPA+GN+TYdFSFKSsviTLn...
Aepyprymnus_rufescens 580 XPLTIPEMTLPYTTTPPLRDFSLWERTGLKDFLKTTKQSFDLSVNAQYKKNTDRHFVPFPLGAVYDALSPDINAVHHHFEKGRDKMLDFLTKSYNKAKVKFDKYKVETSLDKLPRTIRIPGYYIPFNIIVSPFTAEMPAIGYMVPKEMRTPGFTIPGIGFSLPSYTFVLPLEFPVLHVPTSLQKLTLPDFEIPRPSDHIPIPALGNFTYDFSFKSSVITLN...
79***************************************************************************************************************************************************************************************************************************...
>> Acrobates_pygmaeus
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 762.4 17.1 1.2e-232 1.2e-232 1 340 [. 1 340 [. 1 347 [. 0.99
2 ! 1351.8 18.0 0 0 580 1298 .. 580 1298 .. 573 1304 .. 0.99
3 ! 5245.2 11.3 0 0 1504 4546 .. 1504 4509 .. 1497 4515 .. 0.99
test/all_double_std.out view on Meta::CPAN
Acrobates_pygmaeus 1 CRFRSVMRLDYMVYFSFFTWILIPLVIMCVIYVDIFYVIRNKLRQNFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINTISYFPQELVCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLIAAF...
9********************************************************************************************************************************************************************************************************************************...
== domain 2 score: 1351.8 bits; conditional E-value: 0
Meredith169AA 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntna...
pltipe+tlpyt tp++kdfslwe+tgL++fLkTtKQsfDLsv+aqYkKN d+hsip+pL+++y++++ n + l+rhfek+rdk+ldfltksY+eak+kf+kykve+Sl+klprt+++pg++iP+ni vspft+em+afgy++Pke+stp ftip +gfs+psytlvlple+pvLhvp++l++l+Lpd+k+l++s++I iPAmGN+TYdFSFKSsviTLntn+...
Acrobates_pygmaeus 580 XPLTIPEITLPYTXTPPLKDFSLWERTGLRNFLKTTKQSFDLSVNAQYKKNTDSHSIPFPLGAIYDALSPNTDDLHRHFEKARDKTLDFLTKSYDEAKVKFEKYKVETSLHKLPRTLTVPGFYIPMNIVVSPFTAEMPAFGYMVPKEMSTPAFTIPAIGFSLPSYTLVLPLEFPVLHVPTSLRELTLPDIKILRPSDHISIPAMGNLTYDFSFKSSVITLNTNV...
79******************************************************************************************************************************************************************************************************************************...
== domain 3 score: 5245.2 bits; conditional E-value: 0
Meredith169AA 1504 tlygggfqtgtsslhvydgkflarvervivvsmnyrvgalgflalpgnpeapgnmglfdqqlalqwvqkniaafggnpksvtlfgesagaasvslhllspkshplftrailqsgssnapwavmslsearnrtltlakflgcsreneteiikclrnkdpqeillnevfvvpydtllsvnfgptvdgdfltdmpdtllqlgqfkktqilvgvnkdegtaflvygap...
ygg+f++gtsslhvydgkf+arvervivvsmnyrvgalgflalpgn+eapgnmglfdqqlalqwvq+niaafggn+ks+tlfgesagaasvs+h+lspksh lftrailqsgs+napwavms+searnrtl+lak+l+csrenet +ikclrnk+pqeil + ++++++ll++nf+p+vdgdfltdmpd+l+q+g+fk+tqil+gvnkdegt+flvygap...
Acrobates_pygmaeus 1504 XXYGGSFESGTSSLHVYDGKFMARVERVIVVSMNYRVGALGFLALPGNSEAPGNMGLFDQQLALQWVQENIAAFGGNSKSITLFGESAGAASVSFHILSPKSHLLFTRAILQSGSANAPWAVMSPSEARNRTLDLAKSLSCSRENETDLIKCLRNKNPQEILSHVSPILSSGSLLKINFCPIVDGDFLTDMPDNLIQQGHFKQTQILMGVNKDEGTYFLVYGAP...
67******************************************************************************************************************************************************************************************************************************...
== domain 4 score: 4873.3 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrk+YaAvvTnchK+sWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhs+KWSeCARVK+LEAVITNL+QGEEYLFRVvAVNEKGRSDPRSLAVP++AKDLVIEPDVRPaFns...
Acrobates_pygmaeus 4741 XXNSSGTKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKAYAAVVTNCHKHSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSDKWSECARVKNLEAVITNLAQGEEYLFRVVAVNEKGRSDPRSLAVPVIAKDLVIEPDVRPAFNS...
57******************************************************************************************************************************************************************************************************************************...
test/all_double_std.out view on Meta::CPAN
2 ! 13218.3 0.0 0 0 767 6705 .] 643 6574 .] 640 6574 .] 1.00
Alignments for each domain:
== domain 1 score: 1554.0 bits; conditional E-value: 0
Meredith169AA2 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
cqfrsvmrmdymvyfsfftwilipl+vmcaiyldifyvirnkl+qnfs+sk+tgafygrefktakslflvlflfalswlplsiinci+yfpq++lylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
Ailuropoda_melanoleuca 1 CQFRSVMRMDYMVYFSFFTWILIPLIVMCAIYLDIFYVIRNKLNQNFSGSKDTGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCITYFPQILLYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWL...
9****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 13218.3 bits; conditional E-value: 0
Meredith169AA2 767 pdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntnaglYnqsDivahflssSssvidaLqykleGtssltrkRglKlAtalslsnkfvegnhdstiSltkknmeasvtttakvqipilrmnfkqelnGntkskptvsssielkYdfnspklystakGavdhklslesltsyfsiesstkgdikgsvlseysgtiaseastYlnskgtrssvklqgaskv...
df+vlst+n+I+iPAmGNiTYdFSFKS +iTLntn+glYnqsDivahfl+sSssv+daLqykleGtssltrkR lKlAtalslsnkfvegnhdstiSltkknmeasvtt+akvqipilrmnfkqelnGntkskptvs siel+Yd+ns++ ysta+G+v hk++lesltsyfsiesstkgdikgsv+s+ysgtiaseastYlnsk+trssvklqgaskv...
Ailuropoda_melanoleuca 643 KDFQVLSTPNDIFIPAMGNITYDFSFKSGIITLNTNVGLYNQSDIVAHFLTSSSSVTDALQYKLEGTSSLTRKRDLKLATALSLSNKFVEGNHDSTISLTKKNMEASVTTSAKVQIPILRMNFKQELNGNTKSKPTVSASIELTYDLNSAEQYSTATGTVSHKFNLESLTSYFSIESSTKGDIKGSVFSKYSGTIASEASTYLNSKSTRSSVKLQGASKV...
69**************************************************************************************************************************************************************************************************************************...
>> Abrocoma_bennettii
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3876.6 2.8 0 0 1 1789 [. 1 1788 [. 1 1795 [. 1.00
2 ! 4102.0 13.3 0 0 2038 4546 .. 2037 4459 .. 2026 4465 .. 0.99
3 ! 4943.5 15.5 0 0 4778 6705 .] 4691 6619 .] 4683 6619 .] 1.00
Alignments for each domain:
== domain 1 score: 3876.6 bits; conditional E-value: 0
Meredith169AA2 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaa...
c+f +m+m+ymv+fsfftwi+iplvvmcaiyl+if+virnklsqn+s+sketgafygref+takslflvlflfal+wlplsiinc++yfp+ +++lgillsh i gnal ilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlc isldrywavsraleynskrtprrikciiltvwliaa...
Abrocoma_bennettii 1 CSFLPTMSMEYMVFFSFFTWIFIPLVVMCAIYLNIFHVIRNKLSQNLSASKETGAFYGREFRTAKSLFLVLFLFALCWLPLSIINCALYFPDDIMFLGILLSHXXXXXXILGNALGILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCXISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAA...
99******************************************************************************************************************************************************************************************************************************...
== domain 2 score: 4102.0 bits; conditional E-value: 0
Meredith169AA2 2038 qkvnewfsrsdeiltsddshdggsekidllasdphdaliceservhskpvesniedkifgktyrrkaslpnlshiteitqerpltnklkrkrrttsglhpedfikkvdlavvqktpekinegtdqngqvmnitnnghenetkgdyvqkeknanpteslekesafrtkaepisssisnmelelnihsskapkknrlrrksstrhihalelvvsrnpsppnhtelq...
vnewfsrsde+ ts+d +d + ek+dl asdp++a++c++ r ++ + + ++edk+fgktyrrk sl nlsh + +tqe+plt+++krkrrt s+lhpedfikk+ la +qktpek ++g++q++qv++i nn+ enet+g vq+ +n++p++slekes+ + +ep+sss ++mele+n++ ap+ nrlr++ss+r+++ + spp h elq...
Abrocoma_bennettii 2037 XXVNEWFSRSDEMETSEDGCDWEXEKTDLKASDPQRAVTCATVRGCPSAGKGSVEDKVFGKTYRRKGSLANLSHSAXVTQECPLTSTVKRKRRTLSCLHPEDFIKKAGLAAAQKTPEKDTQGMKQSSQVTSIPNNN-ENETEGVAVQRXQNPSPVQSLEKESVPGMGTEPQSSSGNSMELEWNVCPPGAPQGNRLRKRSSARQVP--------HLSPPGHPELQ...
679**********************************************************************************************************************************985.9*******************************************************************........779********...
== domain 3 score: 4943.5 bits; conditional E-value: 0
Meredith169AA2 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssg+ksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPi+AKDLVIEPDVRPaF+s...
Abrocoma_bennettii 4691 XXNSSGMKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSEKWSECARVKSLEAVITNLTQGEEYLFRVVAVNEKGRSDPRSLAVPIIAKDLVIEPDVRPAFSS...
57******************************************************************************************************************************************************************************************************************************...
test/all_double_std.out view on Meta::CPAN
2 ! 11808.5 45.4 0 0 580 6705 .] 580 6642 .] 573 6642 .] 0.99
Alignments for each domain:
== domain 1 score: 757.3 bits; conditional E-value: 4.1e-231
Meredith169AA2 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwli...
c+f+sv+rmdymvyfsfftwil+plv+mcaiy+difyvirn+ +q fs+sketgafygrefktaksl+l+lflfa+swlplsiinc++yfp+++l+lgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfr+twcevylaldvlfctssivhlcaisldryw+vsraleynskrtprrik+iiltvwli...
Aepyprymnus_rufescens 1 CRFSSVIRMDYMVYFSFFTWILVPLVIMCAIYMDIFYVIRNNXRQXFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINCVSYFPKELLCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLI...
9*****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 11808.5 bits; conditional E-value: 0
Meredith169AA2 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLn...
pltipemtlpytttp+++dfslwe+tgLK+fLkTtKQsfDLsv+aqYkKN d+h +p+pL+++y++++ +in++++hfek+rdk+ldfltksYn+ak+kfdkykve+Sl+klprt++ipgY+iP+ni vspft+em+a+gy++Pke++tp+ftipg+gfs+psyt+vlple+pvLhvp++l+kl+Lpdf+++++s++I iPA+GN+TYdFSFKSsviTLn...
Aepyprymnus_rufescens 580 XPLTIPEMTLPYTTTPPLRDFSLWERTGLKDFLKTTKQSFDLSVNAQYKKNTDRHFVPFPLGAVYDALSPDINAVHHHFEKGRDKMLDFLTKSYNKAKVKFDKYKVETSLDKLPRTIRIPGYYIPFNIIVSPFTAEMPAIGYMVPKEMRTPGFTIPGIGFSLPSYTFVLPLEFPVLHVPTSLQKLTLPDFEIPRPSDHIPIPALGNFTYDFSFKSSVITLN...
79***************************************************************************************************************************************************************************************************************************...
>> Acrobates_pygmaeus
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 762.4 17.1 1.2e-232 1.2e-232 1 340 [. 1 340 [. 1 347 [. 0.99
2 ! 1351.8 18.0 0 0 580 1298 .. 580 1298 .. 573 1304 .. 0.99
3 ! 5245.2 11.3 0 0 1504 4546 .. 1504 4509 .. 1497 4515 .. 0.99
test/all_double_std.out view on Meta::CPAN
Acrobates_pygmaeus 1 CRFRSVMRLDYMVYFSFFTWILIPLVIMCVIYVDIFYVIRNKLRQNFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINTISYFPQELVCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLIAAF...
9********************************************************************************************************************************************************************************************************************************...
== domain 2 score: 1351.8 bits; conditional E-value: 0
Meredith169AA2 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntna...
pltipe+tlpyt tp++kdfslwe+tgL++fLkTtKQsfDLsv+aqYkKN d+hsip+pL+++y++++ n + l+rhfek+rdk+ldfltksY+eak+kf+kykve+Sl+klprt+++pg++iP+ni vspft+em+afgy++Pke+stp ftip +gfs+psytlvlple+pvLhvp++l++l+Lpd+k+l++s++I iPAmGN+TYdFSFKSsviTLntn+...
Acrobates_pygmaeus 580 XPLTIPEITLPYTXTPPLKDFSLWERTGLRNFLKTTKQSFDLSVNAQYKKNTDSHSIPFPLGAIYDALSPNTDDLHRHFEKARDKTLDFLTKSYDEAKVKFEKYKVETSLHKLPRTLTVPGFYIPMNIVVSPFTAEMPAFGYMVPKEMSTPAFTIPAIGFSLPSYTLVLPLEFPVLHVPTSLRELTLPDIKILRPSDHISIPAMGNLTYDFSFKSSVITLNTNV...
79******************************************************************************************************************************************************************************************************************************...
== domain 3 score: 5245.2 bits; conditional E-value: 0
Meredith169AA2 1504 tlygggfqtgtsslhvydgkflarvervivvsmnyrvgalgflalpgnpeapgnmglfdqqlalqwvqkniaafggnpksvtlfgesagaasvslhllspkshplftrailqsgssnapwavmslsearnrtltlakflgcsreneteiikclrnkdpqeillnevfvvpydtllsvnfgptvdgdfltdmpdtllqlgqfkktqilvgvnkdegtaflvygap...
ygg+f++gtsslhvydgkf+arvervivvsmnyrvgalgflalpgn+eapgnmglfdqqlalqwvq+niaafggn+ks+tlfgesagaasvs+h+lspksh lftrailqsgs+napwavms+searnrtl+lak+l+csrenet +ikclrnk+pqeil + ++++++ll++nf+p+vdgdfltdmpd+l+q+g+fk+tqil+gvnkdegt+flvygap...
Acrobates_pygmaeus 1504 XXYGGSFESGTSSLHVYDGKFMARVERVIVVSMNYRVGALGFLALPGNSEAPGNMGLFDQQLALQWVQENIAAFGGNSKSITLFGESAGAASVSFHILSPKSHLLFTRAILQSGSANAPWAVMSPSEARNRTLDLAKSLSCSRENETDLIKCLRNKNPQEILSHVSPILSSGSLLKINFCPIVDGDFLTDMPDNLIQQGHFKQTQILMGVNKDEGTYFLVYGAP...
67******************************************************************************************************************************************************************************************************************************...
== domain 4 score: 4873.3 bits; conditional E-value: 0
Meredith169AA2 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrk+YaAvvTnchK+sWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhs+KWSeCARVK+LEAVITNL+QGEEYLFRVvAVNEKGRSDPRSLAVP++AKDLVIEPDVRPaFns...
Acrobates_pygmaeus 4741 XXNSSGTKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKAYAAVVTNCHKHSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSDKWSECARVKNLEAVITNLAQGEEYLFRVVAVNEKGRSDPRSLAVPVIAKDLVIEPDVRPAFNS...
57******************************************************************************************************************************************************************************************************************************...
test/hmmer3.stdout view on Meta::CPAN
3 ! 4943.5 15.5 0 0 4778 6705 .] 4691 6619 .] 4683 6619 .] 1.00
Alignments for each domain:
== domain 1 score: 3876.6 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaa...
c+f +m+m+ymv+fsfftwi+iplvvmcaiyl+if+virnklsqn+s+sketgafygref+takslflvlflfal+wlplsiinc++yfp+ +++lgillsh i gnal ilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlc isldrywavsraleynskrtprrikciiltvwliaa...
Abrocoma_bennettii 1 CSFLPTMSMEYMVFFSFFTWIFIPLVVMCAIYLNIFHVIRNKLSQNLSASKETGAFYGREFRTAKSLFLVLFLFALCWLPLSIINCALYFPDDIMFLGILLSHXXXXXXILGNALGILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCXISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAA...
99******************************************************************************************************************************************************************************************************************************...
== domain 2 score: 4102.0 bits; conditional E-value: 0
Meredith169AA 2038 qkvnewfsrsdeiltsddshdggsekidllasdphdaliceservhskpvesniedkifgktyrrkaslpnlshiteitqerpltnklkrkrrttsglhpedfikkvdlavvqktpekinegtdqngqvmnitnnghenetkgdyvqkeknanpteslekesafrtkaepisssisnmelelnihsskapkknrlrrksstrhihalelvvsrnpsppnhtelq...
vnewfsrsde+ ts+d +d + ek+dl asdp++a++c++ r ++ + + ++edk+fgktyrrk sl nlsh + +tqe+plt+++krkrrt s+lhpedfikk+ la +qktpek ++g++q++qv++i nn+ enet+g vq+ +n++p++slekes+ + +ep+sss ++mele+n++ ap+ nrlr++ss+r+++ + spp h elq...
Abrocoma_bennettii 2037 XXVNEWFSRSDEMETSEDGCDWEXEKTDLKASDPQRAVTCATVRGCPSAGKGSVEDKVFGKTYRRKGSLANLSHSAXVTQECPLTSTVKRKRRTLSCLHPEDFIKKAGLAAAQKTPEKDTQGMKQSSQVTSIPNNN-ENETEGVAVQRXQNPSPVQSLEKESVPGMGTEPQSSSGNSMELEWNVCPPGAPQGNRLRKRSSARQVP--------HLSPPGHPELQ...
679**********************************************************************************************************************************985.9*******************************************************************........779********...
== domain 3 score: 4943.5 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssg+ksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPi+AKDLVIEPDVRPaF+s...
Abrocoma_bennettii 4691 XXNSSGMKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSEKWSECARVKSLEAVITNLTQGEEYLFRVVAVNEKGRSDPRSLAVPIIAKDLVIEPDVRPAFSS...
57******************************************************************************************************************************************************************************************************************************...
test/hmmer_double_short.stdout view on Meta::CPAN
2 ! 13218.3 0.0 0 0 767 6705 .] 643 6574 .] 640 6574 .] 1.00
Alignments for each domain:
== domain 1 score: 1554.0 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
cqfrsvmrmdymvyfsfftwilipl+vmcaiyldifyvirnkl+qnfs+sk+tgafygrefktakslflvlflfalswlplsiinci+yfpq++lylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
Ailuropoda_melanoleuca 1 CQFRSVMRMDYMVYFSFFTWILIPLIVMCAIYLDIFYVIRNKLNQNFSGSKDTGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCITYFPQILLYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWL...
9****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 13218.3 bits; conditional E-value: 0
Meredith169AA 767 pdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntnaglYnqsDivahflssSssvidaLqykleGtssltrkRglKlAtalslsnkfvegnhdstiSltkknmeasvtttakvqipilrmnfkqelnGntkskptvsssielkYdfnspklystakGavdhklslesltsyfsiesstkgdikgsvlseysgtiaseastYlnskgtrssvklqgaskv...
df+vlst+n+I+iPAmGNiTYdFSFKS +iTLntn+glYnqsDivahfl+sSssv+daLqykleGtssltrkR lKlAtalslsnkfvegnhdstiSltkknmeasvtt+akvqipilrmnfkqelnGntkskptvs siel+Yd+ns++ ysta+G+v hk++lesltsyfsiesstkgdikgsv+s+ysgtiaseastYlnsk+trssvklqgaskv...
Ailuropoda_melanoleuca 643 KDFQVLSTPNDIFIPAMGNITYDFSFKSGIITLNTNVGLYNQSDIVAHFLTSSSSVTDALQYKLEGTSSLTRKRDLKLATALSLSNKFVEGNHDSTISLTKKNMEASVTTSAKVQIPILRMNFKQELNGNTKSKPTVSASIELTYDLNSAEQYSTATGTVSHKFNLESLTSYFSIESSTKGDIKGSVFSKYSGTIASEASTYLNSKSTRSSVKLQGASKV...
69**************************************************************************************************************************************************************************************************************************...
>> Abrocoma_bennettii
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3876.6 2.8 0 0 1 1789 [. 1 1788 [. 1 1795 [. 1.00
2 ! 4102.0 13.3 0 0 2038 4546 .. 2037 4459 .. 2026 4465 .. 0.99
3 ! 4943.5 15.5 0 0 4778 6705 .] 4691 6619 .] 4683 6619 .] 1.00
Alignments for each domain:
== domain 1 score: 3876.6 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaa...
c+f +m+m+ymv+fsfftwi+iplvvmcaiyl+if+virnklsqn+s+sketgafygref+takslflvlflfal+wlplsiinc++yfp+ +++lgillsh i gnal ilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlc isldrywavsraleynskrtprrikciiltvwliaa...
Abrocoma_bennettii 1 CSFLPTMSMEYMVFFSFFTWIFIPLVVMCAIYLNIFHVIRNKLSQNLSASKETGAFYGREFRTAKSLFLVLFLFALCWLPLSIINCALYFPDDIMFLGILLSHXXXXXXILGNALGILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCXISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAA...
99******************************************************************************************************************************************************************************************************************************...
== domain 2 score: 4102.0 bits; conditional E-value: 0
Meredith169AA 2038 qkvnewfsrsdeiltsddshdggsekidllasdphdaliceservhskpvesniedkifgktyrrkaslpnlshiteitqerpltnklkrkrrttsglhpedfikkvdlavvqktpekinegtdqngqvmnitnnghenetkgdyvqkeknanpteslekesafrtkaepisssisnmelelnihsskapkknrlrrksstrhihalelvvsrnpsppnhtelq...
vnewfsrsde+ ts+d +d + ek+dl asdp++a++c++ r ++ + + ++edk+fgktyrrk sl nlsh + +tqe+plt+++krkrrt s+lhpedfikk+ la +qktpek ++g++q++qv++i nn+ enet+g vq+ +n++p++slekes+ + +ep+sss ++mele+n++ ap+ nrlr++ss+r+++ + spp h elq...
Abrocoma_bennettii 2037 XXVNEWFSRSDEMETSEDGCDWEXEKTDLKASDPQRAVTCATVRGCPSAGKGSVEDKVFGKTYRRKGSLANLSHSAXVTQECPLTSTVKRKRRTLSCLHPEDFIKKAGLAAAQKTPEKDTQGMKQSSQVTSIPNNN-ENETEGVAVQRXQNPSPVQSLEKESVPGMGTEPQSSSGNSMELEWNVCPPGAPQGNRLRKRSSARQVP--------HLSPPGHPELQ...
679**********************************************************************************************************************************985.9*******************************************************************........779********...
== domain 3 score: 4943.5 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssg+ksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPi+AKDLVIEPDVRPaF+s...
Abrocoma_bennettii 4691 XXNSSGMKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSEKWSECARVKSLEAVITNLTQGEEYLFRVVAVNEKGRSDPRSLAVPIIAKDLVIEPDVRPAFSS...
57******************************************************************************************************************************************************************************************************************************...
test/hmmer_double_short.stdout view on Meta::CPAN
2 ! 11808.5 45.4 0 0 580 6705 .] 580 6642 .] 573 6642 .] 0.99
Alignments for each domain:
== domain 1 score: 757.3 bits; conditional E-value: 4.1e-231
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwli...
c+f+sv+rmdymvyfsfftwil+plv+mcaiy+difyvirn+ +q fs+sketgafygrefktaksl+l+lflfa+swlplsiinc++yfp+++l+lgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfr+twcevylaldvlfctssivhlcaisldryw+vsraleynskrtprrik+iiltvwli...
Aepyprymnus_rufescens 1 CRFSSVIRMDYMVYFSFFTWILVPLVIMCAIYMDIFYVIRNNXRQXFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINCVSYFPKELLCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLI...
9*****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 11808.5 bits; conditional E-value: 0
Meredith169AA 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLn...
pltipemtlpytttp+++dfslwe+tgLK+fLkTtKQsfDLsv+aqYkKN d+h +p+pL+++y++++ +in++++hfek+rdk+ldfltksYn+ak+kfdkykve+Sl+klprt++ipgY+iP+ni vspft+em+a+gy++Pke++tp+ftipg+gfs+psyt+vlple+pvLhvp++l+kl+Lpdf+++++s++I iPA+GN+TYdFSFKSsviTLn...
Aepyprymnus_rufescens 580 XPLTIPEMTLPYTTTPPLRDFSLWERTGLKDFLKTTKQSFDLSVNAQYKKNTDRHFVPFPLGAVYDALSPDINAVHHHFEKGRDKMLDFLTKSYNKAKVKFDKYKVETSLDKLPRTIRIPGYYIPFNIIVSPFTAEMPAIGYMVPKEMRTPGFTIPGIGFSLPSYTFVLPLEFPVLHVPTSLQKLTLPDFEIPRPSDHIPIPALGNFTYDFSFKSSVITLN...
79***************************************************************************************************************************************************************************************************************************...
>> Acrobates_pygmaeus
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 762.4 17.1 1.2e-232 1.2e-232 1 340 [. 1 340 [. 1 347 [. 0.99
2 ! 1351.8 18.0 0 0 580 1298 .. 580 1298 .. 573 1304 .. 0.99
3 ! 5245.2 11.3 0 0 1504 4546 .. 1504 4509 .. 1497 4515 .. 0.99
test/hmmer_double_short.stdout view on Meta::CPAN
Acrobates_pygmaeus 1 CRFRSVMRLDYMVYFSFFTWILIPLVIMCVIYVDIFYVIRNKLRQNFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINTISYFPQELVCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLIAAF...
9********************************************************************************************************************************************************************************************************************************...
== domain 2 score: 1351.8 bits; conditional E-value: 0
Meredith169AA 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntna...
pltipe+tlpyt tp++kdfslwe+tgL++fLkTtKQsfDLsv+aqYkKN d+hsip+pL+++y++++ n + l+rhfek+rdk+ldfltksY+eak+kf+kykve+Sl+klprt+++pg++iP+ni vspft+em+afgy++Pke+stp ftip +gfs+psytlvlple+pvLhvp++l++l+Lpd+k+l++s++I iPAmGN+TYdFSFKSsviTLntn+...
Acrobates_pygmaeus 580 XPLTIPEITLPYTXTPPLKDFSLWERTGLRNFLKTTKQSFDLSVNAQYKKNTDSHSIPFPLGAIYDALSPNTDDLHRHFEKARDKTLDFLTKSYDEAKVKFEKYKVETSLHKLPRTLTVPGFYIPMNIVVSPFTAEMPAFGYMVPKEMSTPAFTIPAIGFSLPSYTLVLPLEFPVLHVPTSLRELTLPDIKILRPSDHISIPAMGNLTYDFSFKSSVITLNTNV...
79******************************************************************************************************************************************************************************************************************************...
== domain 3 score: 5245.2 bits; conditional E-value: 0
Meredith169AA 1504 tlygggfqtgtsslhvydgkflarvervivvsmnyrvgalgflalpgnpeapgnmglfdqqlalqwvqkniaafggnpksvtlfgesagaasvslhllspkshplftrailqsgssnapwavmslsearnrtltlakflgcsreneteiikclrnkdpqeillnevfvvpydtllsvnfgptvdgdfltdmpdtllqlgqfkktqilvgvnkdegtaflvygap...
ygg+f++gtsslhvydgkf+arvervivvsmnyrvgalgflalpgn+eapgnmglfdqqlalqwvq+niaafggn+ks+tlfgesagaasvs+h+lspksh lftrailqsgs+napwavms+searnrtl+lak+l+csrenet +ikclrnk+pqeil + ++++++ll++nf+p+vdgdfltdmpd+l+q+g+fk+tqil+gvnkdegt+flvygap...
Acrobates_pygmaeus 1504 XXYGGSFESGTSSLHVYDGKFMARVERVIVVSMNYRVGALGFLALPGNSEAPGNMGLFDQQLALQWVQENIAAFGGNSKSITLFGESAGAASVSFHILSPKSHLLFTRAILQSGSANAPWAVMSPSEARNRTLDLAKSLSCSRENETDLIKCLRNKNPQEILSHVSPILSSGSLLKINFCPIVDGDFLTDMPDNLIQQGHFKQTQILMGVNKDEGTYFLVYGAP...
67******************************************************************************************************************************************************************************************************************************...
== domain 4 score: 4873.3 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrk+YaAvvTnchK+sWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhs+KWSeCARVK+LEAVITNL+QGEEYLFRVvAVNEKGRSDPRSLAVP++AKDLVIEPDVRPaFns...
Acrobates_pygmaeus 4741 XXNSSGTKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKAYAAVVTNCHKHSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSDKWSECARVKNLEAVITNLAQGEEYLFRVVAVNEKGRSDPRSLAVPVIAKDLVIEPDVRPAFNS...
57******************************************************************************************************************************************************************************************************************************...
test/hmmer_double_short.stdout view on Meta::CPAN
2 ! 13218.3 0.0 0 0 767 6705 .] 643 6574 .] 640 6574 .] 1.00
Alignments for each domain:
== domain 1 score: 1554.0 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
cqfrsvmrmdymvyfsfftwilipl+vmcaiyldifyvirnkl+qnfs+sk+tgafygrefktakslflvlflfalswlplsiinci+yfpq++lylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwl...
Ailuropoda_melanoleuca 1 CQFRSVMRMDYMVYFSFFTWILIPLIVMCAIYLDIFYVIRNKLNQNFSGSKDTGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCITYFPQILLYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWL...
9****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 13218.3 bits; conditional E-value: 0
Meredith169AA 767 pdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntnaglYnqsDivahflssSssvidaLqykleGtssltrkRglKlAtalslsnkfvegnhdstiSltkknmeasvtttakvqipilrmnfkqelnGntkskptvsssielkYdfnspklystakGavdhklslesltsyfsiesstkgdikgsvlseysgtiaseastYlnskgtrssvklqgaskv...
df+vlst+n+I+iPAmGNiTYdFSFKS +iTLntn+glYnqsDivahfl+sSssv+daLqykleGtssltrkR lKlAtalslsnkfvegnhdstiSltkknmeasvtt+akvqipilrmnfkqelnGntkskptvs siel+Yd+ns++ ysta+G+v hk++lesltsyfsiesstkgdikgsv+s+ysgtiaseastYlnsk+trssvklqgaskv...
Ailuropoda_melanoleuca 643 KDFQVLSTPNDIFIPAMGNITYDFSFKSGIITLNTNVGLYNQSDIVAHFLTSSSSVTDALQYKLEGTSSLTRKRDLKLATALSLSNKFVEGNHDSTISLTKKNMEASVTTSAKVQIPILRMNFKQELNGNTKSKPTVSASIELTYDLNSAEQYSTATGTVSHKFNLESLTSYFSIESSTKGDIKGSVFSKYSGTIASEASTYLNSKSTRSSVKLQGASKV...
69**************************************************************************************************************************************************************************************************************************...
>> Abrocoma_bennettii
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 3876.6 2.8 0 0 1 1789 [. 1 1788 [. 1 1795 [. 1.00
2 ! 4102.0 13.3 0 0 2038 4546 .. 2037 4459 .. 2026 4465 .. 0.99
3 ! 4943.5 15.5 0 0 4778 6705 .] 4691 6619 .] 4683 6619 .] 1.00
Alignments for each domain:
== domain 1 score: 3876.6 bits; conditional E-value: 0
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaa...
c+f +m+m+ymv+fsfftwi+iplvvmcaiyl+if+virnklsqn+s+sketgafygref+takslflvlflfal+wlplsiinc++yfp+ +++lgillsh i gnal ilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlc isldrywavsraleynskrtprrikciiltvwliaa...
Abrocoma_bennettii 1 CSFLPTMSMEYMVFFSFFTWIFIPLVVMCAIYLNIFHVIRNKLSQNLSASKETGAFYGREFRTAKSLFLVLFLFALCWLPLSIINCALYFPDDIMFLGILLSHXXXXXXILGNALGILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCXISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAA...
99******************************************************************************************************************************************************************************************************************************...
== domain 2 score: 4102.0 bits; conditional E-value: 0
Meredith169AA 2038 qkvnewfsrsdeiltsddshdggsekidllasdphdaliceservhskpvesniedkifgktyrrkaslpnlshiteitqerpltnklkrkrrttsglhpedfikkvdlavvqktpekinegtdqngqvmnitnnghenetkgdyvqkeknanpteslekesafrtkaepisssisnmelelnihsskapkknrlrrksstrhihalelvvsrnpsppnhtelq...
vnewfsrsde+ ts+d +d + ek+dl asdp++a++c++ r ++ + + ++edk+fgktyrrk sl nlsh + +tqe+plt+++krkrrt s+lhpedfikk+ la +qktpek ++g++q++qv++i nn+ enet+g vq+ +n++p++slekes+ + +ep+sss ++mele+n++ ap+ nrlr++ss+r+++ + spp h elq...
Abrocoma_bennettii 2037 XXVNEWFSRSDEMETSEDGCDWEXEKTDLKASDPQRAVTCATVRGCPSAGKGSVEDKVFGKTYRRKGSLANLSHSAXVTQECPLTSTVKRKRRTLSCLHPEDFIKKAGLAAAQKTPEKDTQGMKQSSQVTSIPNNN-ENETEGVAVQRXQNPSPVQSLEKESVPGMGTEPQSSSGNSMELEWNVCPPGAPQGNRLRKRSSARQVP--------HLSPPGHPELQ...
679**********************************************************************************************************************************985.9*******************************************************************........779********...
== domain 3 score: 4943.5 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssg+ksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPi+AKDLVIEPDVRPaF+s...
Abrocoma_bennettii 4691 XXNSSGMKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSEKWSECARVKSLEAVITNLTQGEEYLFRVVAVNEKGRSDPRSLAVPIIAKDLVIEPDVRPAFSS...
57******************************************************************************************************************************************************************************************************************************...
test/hmmer_double_short.stdout view on Meta::CPAN
2 ! 11808.5 45.4 0 0 580 6705 .] 580 6642 .] 573 6642 .] 0.99
Alignments for each domain:
== domain 1 score: 757.3 bits; conditional E-value: 4.1e-231
Meredith169AA 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwli...
c+f+sv+rmdymvyfsfftwil+plv+mcaiy+difyvirn+ +q fs+sketgafygrefktaksl+l+lflfa+swlplsiinc++yfp+++l+lgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfr+twcevylaldvlfctssivhlcaisldryw+vsraleynskrtprrik+iiltvwli...
Aepyprymnus_rufescens 1 CRFSSVIRMDYMVYFSFFTWILVPLVIMCAIYMDIFYVIRNNXRQXFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINCVSYFPKELLCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLI...
9*****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 11808.5 bits; conditional E-value: 0
Meredith169AA 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLn...
pltipemtlpytttp+++dfslwe+tgLK+fLkTtKQsfDLsv+aqYkKN d+h +p+pL+++y++++ +in++++hfek+rdk+ldfltksYn+ak+kfdkykve+Sl+klprt++ipgY+iP+ni vspft+em+a+gy++Pke++tp+ftipg+gfs+psyt+vlple+pvLhvp++l+kl+Lpdf+++++s++I iPA+GN+TYdFSFKSsviTLn...
Aepyprymnus_rufescens 580 XPLTIPEMTLPYTTTPPLRDFSLWERTGLKDFLKTTKQSFDLSVNAQYKKNTDRHFVPFPLGAVYDALSPDINAVHHHFEKGRDKMLDFLTKSYNKAKVKFDKYKVETSLDKLPRTIRIPGYYIPFNIIVSPFTAEMPAIGYMVPKEMRTPGFTIPGIGFSLPSYTFVLPLEFPVLHVPTSLQKLTLPDFEIPRPSDHIPIPALGNFTYDFSFKSSVITLN...
79***************************************************************************************************************************************************************************************************************************...
>> Acrobates_pygmaeus
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 762.4 17.1 1.2e-232 1.2e-232 1 340 [. 1 340 [. 1 347 [. 0.99
2 ! 1351.8 18.0 0 0 580 1298 .. 580 1298 .. 573 1304 .. 0.99
3 ! 5245.2 11.3 0 0 1504 4546 .. 1504 4509 .. 1497 4515 .. 0.99
test/hmmer_double_short.stdout view on Meta::CPAN
Acrobates_pygmaeus 1 CRFRSVMRLDYMVYFSFFTWILIPLVIMCVIYVDIFYVIRNKLRQNFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINTISYFPQELVCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLIAAF...
9********************************************************************************************************************************************************************************************************************************...
== domain 2 score: 1351.8 bits; conditional E-value: 0
Meredith169AA 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntna...
pltipe+tlpyt tp++kdfslwe+tgL++fLkTtKQsfDLsv+aqYkKN d+hsip+pL+++y++++ n + l+rhfek+rdk+ldfltksY+eak+kf+kykve+Sl+klprt+++pg++iP+ni vspft+em+afgy++Pke+stp ftip +gfs+psytlvlple+pvLhvp++l++l+Lpd+k+l++s++I iPAmGN+TYdFSFKSsviTLntn+...
Acrobates_pygmaeus 580 XPLTIPEITLPYTXTPPLKDFSLWERTGLRNFLKTTKQSFDLSVNAQYKKNTDSHSIPFPLGAIYDALSPNTDDLHRHFEKARDKTLDFLTKSYDEAKVKFEKYKVETSLHKLPRTLTVPGFYIPMNIVVSPFTAEMPAFGYMVPKEMSTPAFTIPAIGFSLPSYTLVLPLEFPVLHVPTSLRELTLPDIKILRPSDHISIPAMGNLTYDFSFKSSVITLNTNV...
79******************************************************************************************************************************************************************************************************************************...
== domain 3 score: 5245.2 bits; conditional E-value: 0
Meredith169AA 1504 tlygggfqtgtsslhvydgkflarvervivvsmnyrvgalgflalpgnpeapgnmglfdqqlalqwvqkniaafggnpksvtlfgesagaasvslhllspkshplftrailqsgssnapwavmslsearnrtltlakflgcsreneteiikclrnkdpqeillnevfvvpydtllsvnfgptvdgdfltdmpdtllqlgqfkktqilvgvnkdegtaflvygap...
ygg+f++gtsslhvydgkf+arvervivvsmnyrvgalgflalpgn+eapgnmglfdqqlalqwvq+niaafggn+ks+tlfgesagaasvs+h+lspksh lftrailqsgs+napwavms+searnrtl+lak+l+csrenet +ikclrnk+pqeil + ++++++ll++nf+p+vdgdfltdmpd+l+q+g+fk+tqil+gvnkdegt+flvygap...
Acrobates_pygmaeus 1504 XXYGGSFESGTSSLHVYDGKFMARVERVIVVSMNYRVGALGFLALPGNSEAPGNMGLFDQQLALQWVQENIAAFGGNSKSITLFGESAGAASVSFHILSPKSHLLFTRAILQSGSANAPWAVMSPSEARNRTLDLAKSLSCSRENETDLIKCLRNKNPQEILSHVSPILSSGSLLKINFCPIVDGDFLTDMPDNLIQQGHFKQTQILMGVNKDEGTYFLVYGAP...
67******************************************************************************************************************************************************************************************************************************...
== domain 4 score: 4873.3 bits; conditional E-value: 0
Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrk+YaAvvTnchK+sWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhs+KWSeCARVK+LEAVITNL+QGEEYLFRVvAVNEKGRSDPRSLAVP++AKDLVIEPDVRPaFns...
Acrobates_pygmaeus 4741 XXNSSGTKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKAYAAVVTNCHKHSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSDKWSECARVKNLEAVITNLAQGEEYLFRVVAVNEKGRSDPRSLAVPVIAKDLVIEPDVRPAFNS...
57******************************************************************************************************************************************************************************************************************************...
test/hmmer_short.stdout view on Meta::CPAN
3 ! 4943.5 15.5 0 0 4778 6705 .] 4691 6619 .] 4683 6619 .] 1.00
Alignments for each domain:
== domain 1 score: 3876.6 bits; conditional E-value: 0
tmpfile_Qfco 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaa...
c+f +m+m+ymv+fsfftwi+iplvvmcaiyl+if+virnklsqn+s+sketgafygref+takslflvlflfal+wlplsiinc++yfp+ +++lgillsh i gnal ilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlc isldrywavsraleynskrtprrikciiltvwliaa...
Abrocoma_bennettii 1 CSFLPTMSMEYMVFFSFFTWIFIPLVVMCAIYLNIFHVIRNKLSQNLSASKETGAFYGREFRTAKSLFLVLFLFALCWLPLSIINCALYFPDDIMFLGILLSHXXXXXXILGNALGILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCXISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAA...
99******************************************************************************************************************************************************************************************************************************...
== domain 2 score: 4102.0 bits; conditional E-value: 0
tmpfile_Qfco 2038 qkvnewfsrsdeiltsddshdggsekidllasdphdaliceservhskpvesniedkifgktyrrkaslpnlshiteitqerpltnklkrkrrttsglhpedfikkvdlavvqktpekinegtdqngqvmnitnnghenetkgdyvqkeknanpteslekesafrtkaepisssisnmelelnihsskapkknrlrrksstrhihalelvvsrnpsppnhtelq...
vnewfsrsde+ ts+d +d + ek+dl asdp++a++c++ r ++ + + ++edk+fgktyrrk sl nlsh + +tqe+plt+++krkrrt s+lhpedfikk+ la +qktpek ++g++q++qv++i nn+ enet+g vq+ +n++p++slekes+ + +ep+sss ++mele+n++ ap+ nrlr++ss+r+++ + spp h elq...
Abrocoma_bennettii 2037 XXVNEWFSRSDEMETSEDGCDWEXEKTDLKASDPQRAVTCATVRGCPSAGKGSVEDKVFGKTYRRKGSLANLSHSAXVTQECPLTSTVKRKRRTLSCLHPEDFIKKAGLAAAQKTPEKDTQGMKQSSQVTSIPNNN-ENETEGVAVQRXQNPSPVQSLEKESVPGMGTEPQSSSGNSMELEWNVCPPGAPQGNRLRKRSSARQVP--------HLSPPGHPELQ...
679**********************************************************************************************************************************985.9*******************************************************************........779********...
== domain 3 score: 4943.5 bits; conditional E-value: 0
tmpfile_Qfco 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssg+ksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPi+AKDLVIEPDVRPaF+s...
Abrocoma_bennettii 4691 XXNSSGMKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSEKWSECARVKSLEAVITNLTQGEEYLFRVVAVNEKGRSDPRSLAVPIIAKDLVIEPDVRPAFSS...
57******************************************************************************************************************************************************************************************************************************...
test/hmmer_short.stdout view on Meta::CPAN
2 ! 11808.5 45.4 0 0 580 6705 .] 580 6642 .] 573 6642 .] 0.99
Alignments for each domain:
== domain 1 score: 757.3 bits; conditional E-value: 3.1e-231
tmpfile_Qfco 1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwli...
c+f+sv+rmdymvyfsfftwil+plv+mcaiy+difyvirn+ +q fs+sketgafygrefktaksl+l+lflfa+swlplsiinc++yfp+++l+lgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfr+twcevylaldvlfctssivhlcaisldryw+vsraleynskrtprrik+iiltvwli...
Aepyprymnus_rufescens 1 CRFSSVIRMDYMVYFSFFTWILVPLVIMCAIYMDIFYVIRNNXRQXFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINCVSYFPKELLCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLI...
9*****************************************************************************************************************************************************************************************************************************...
== domain 2 score: 11808.5 bits; conditional E-value: 0
tmpfile_Qfco 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLn...
pltipemtlpytttp+++dfslwe+tgLK+fLkTtKQsfDLsv+aqYkKN d+h +p+pL+++y++++ +in++++hfek+rdk+ldfltksYn+ak+kfdkykve+Sl+klprt++ipgY+iP+ni vspft+em+a+gy++Pke++tp+ftipg+gfs+psyt+vlple+pvLhvp++l+kl+Lpdf+++++s++I iPA+GN+TYdFSFKSsviTLn...
Aepyprymnus_rufescens 580 XPLTIPEMTLPYTTTPPLRDFSLWERTGLKDFLKTTKQSFDLSVNAQYKKNTDRHFVPFPLGAVYDALSPDINAVHHHFEKGRDKMLDFLTKSYNKAKVKFDKYKVETSLDKLPRTIRIPGYYIPFNIIVSPFTAEMPAIGYMVPKEMRTPGFTIPGIGFSLPSYTFVLPLEFPVLHVPTSLQKLTLPDFEIPRPSDHIPIPALGNFTYDFSFKSSVITLN...
79***************************************************************************************************************************************************************************************************************************...
>> Acrobates_pygmaeus
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 762.4 17.1 9.3e-233 9.3e-233 1 340 [. 1 340 [. 1 347 [. 0.99
2 ! 1351.8 18.0 0 0 580 1298 .. 580 1298 .. 573 1304 .. 0.99
3 ! 5245.2 11.3 0 0 1504 4546 .. 1504 4509 .. 1497 4515 .. 0.99
test/hmmer_short.stdout view on Meta::CPAN
Acrobates_pygmaeus 1 CRFRSVMRLDYMVYFSFFTWILIPLVIMCVIYVDIFYVIRNKLRQNFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINTISYFPQELVCLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLIAAF...
9********************************************************************************************************************************************************************************************************************************...
== domain 2 score: 1351.8 bits; conditional E-value: 0
tmpfile_Qfco 580 wpltipemtlpytttpqvkdfslwektgLKefLkTtKQsfDLsvkaqYkKNkdkhsipipLdvfyefinqninslnrhfekvrdkaldfltksYneakikfdkykvekSlnklprtfqipgYtiPvnievspftvemlafgyviPkeistpsftipgsgfsvpsytlvlpleLpvLhvprnllklsLpdfkvlstsnnIliPAmGNiTYdFSFKSsviTLntna...
pltipe+tlpyt tp++kdfslwe+tgL++fLkTtKQsfDLsv+aqYkKN d+hsip+pL+++y++++ n + l+rhfek+rdk+ldfltksY+eak+kf+kykve+Sl+klprt+++pg++iP+ni vspft+em+afgy++Pke+stp ftip +gfs+psytlvlple+pvLhvp++l++l+Lpd+k+l++s++I iPAmGN+TYdFSFKSsviTLntn+...
Acrobates_pygmaeus 580 XPLTIPEITLPYTXTPPLKDFSLWERTGLRNFLKTTKQSFDLSVNAQYKKNTDSHSIPFPLGAIYDALSPNTDDLHRHFEKARDKTLDFLTKSYDEAKVKFEKYKVETSLHKLPRTLTVPGFYIPMNIVVSPFTAEMPAFGYMVPKEMSTPAFTIPAIGFSLPSYTLVLPLEFPVLHVPTSLRELTLPDIKILRPSDHISIPAMGNLTYDFSFKSSVITLNTNV...
79******************************************************************************************************************************************************************************************************************************...
== domain 3 score: 5245.2 bits; conditional E-value: 0
tmpfile_Qfco 1504 tlygggfqtgtsslhvydgkflarvervivvsmnyrvgalgflalpgnpeapgnmglfdqqlalqwvqkniaafggnpksvtlfgesagaasvslhllspkshplftrailqsgssnapwavmslsearnrtltlakflgcsreneteiikclrnkdpqeillnevfvvpydtllsvnfgptvdgdfltdmpdtllqlgqfkktqilvgvnkdegtaflvygap...
ygg+f++gtsslhvydgkf+arvervivvsmnyrvgalgflalpgn+eapgnmglfdqqlalqwvq+niaafggn+ks+tlfgesagaasvs+h+lspksh lftrailqsgs+napwavms+searnrtl+lak+l+csrenet +ikclrnk+pqeil + ++++++ll++nf+p+vdgdfltdmpd+l+q+g+fk+tqil+gvnkdegt+flvygap...
Acrobates_pygmaeus 1504 XXYGGSFESGTSSLHVYDGKFMARVERVIVVSMNYRVGALGFLALPGNSEAPGNMGLFDQQLALQWVQENIAAFGGNSKSITLFGESAGAASVSFHILSPKSHLLFTRAILQSGSANAPWAVMSPSEARNRTLDLAKSLSCSRENETDLIKCLRNKNPQEILSHVSPILSSGSLLKINFCPIVDGDFLTDMPDNLIQQGHFKQTQILMGVNKDEGTYFLVYGAP...
67******************************************************************************************************************************************************************************************************************************...
== domain 4 score: 4873.3 bits; conditional E-value: 0
tmpfile_Qfco 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
nssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrk+YaAvvTnchK+sWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhs+KWSeCARVK+LEAVITNL+QGEEYLFRVvAVNEKGRSDPRSLAVP++AKDLVIEPDVRPaFns...
Acrobates_pygmaeus 4741 XXNSSGTKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKAYAAVVTNCHKHSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSDKWSECARVKNLEAVITNLAQGEEYLFRVVAVNEKGRSDPRSLAVPVIAKDLVIEPDVRPAFNS...
57******************************************************************************************************************************************************************************************************************************...
( run in 0.496 second using v1.01-cache-2.11-cpan-e1769b4cff6 )