App-Mimosa
view release on metacpan or search on metacpan
The default is to deploy to a SQLite database in the current
directory, but if you want to use this with a
currently-existing Chado installation, you should but the
connection information in this config key.
## What is Mimosa written in?
Mimosa is written in Perl 5, HTML, CSS, and JavaScript. On the server side, it
uses Moose, BioPerl and the Catalyst web framework. On the client side, it uses
JQuery, JQuery UI.
## How can I help hack on Mimosa or otherwise get involved?
Please join our mailing list at <http://groups.google.com/group/gmod-mimosa> and
take a look at our Github issues for ideas about what we need help with:
<https://github.com/GMOD/mimosa/issues> . Please use Mimosa and tell us how we
can improve it and help it meet your sequence alignment needs.
You are also welcome to join the #gmod IRC channel on irc.freenode.net, where
root/js/ext-3.3.1/adapter/ext/ext-base.js view on Meta::CPAN
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root/js/ext-3.3.1/ext-all.js view on Meta::CPAN
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root/js/mimosa-grid.js view on Meta::CPAN
id :'alphabet',
header : 'Alphabet',
sortable : true,
dataIndex: 'alphabet'
}
],
animCollapse: true,
autoExpandColumn: 'description',
collapsible: true,
columnLines: true,
frame: true,
iconCls:'icon-grid',
sm: sm,
store: store,
stripeRows: true,
title: 'Available Sequence Sets to BLAST against',
autoWidth: true,
autoHeight: true,
stripeRows : true,
// config options for stateful behavior
root/js/stacktrace.js view on Meta::CPAN
getSource: function(url) {
if (!(url in this.sourceCache)) {
this.sourceCache[url] = this.ajax(url).split('\n');
}
return this.sourceCache[url];
},
guessFunctions: function(stack) {
for (var i = 0; i < stack.length; ++i) {
var reStack = /\{anonymous\}\(.*\)@(\w+:\/\/([\-\w\.]+)+(:\d+)?[^:]+):(\d+):?(\d+)?/;
var frame = stack[i], m = reStack.exec(frame);
if (m) {
var file = m[1], lineno = m[4]; //m[7] is character position in Chrome
if (file && this.isSameDomain(file) && lineno) {
var functionName = this.guessFunctionName(file, lineno);
stack[i] = frame.replace('{anonymous}', functionName);
}
}
}
return stack;
},
guessFunctionName: function(url, lineNo) {
var ret;
try {
ret = this.guessFunctionNameFromLines(lineNo, this.getSource(url));
root/js/tabs-admin.js view on Meta::CPAN
Ext.onReady(function(){
// basic tabs 1, built from existing content
var tabs = new Ext.TabPanel({
renderTo: 'tabs1',
width: "80%",
activeTab: 0,
frame: true,
defaults: {autoHeight: true},
items:[
{contentEl:'t1_content', title: 'Align'},
{contentEl:'t2_content', title: 'Preferences'},
{contentEl:'t3_content', title: 'About' },
{contentEl:'t4_content', title: 'Admin'},
]
});
});
root/js/tabs.js view on Meta::CPAN
Ext.onReady(function(){
// basic tabs 1, built from existing content
var tabs = new Ext.TabPanel({
renderTo: 'tabs1',
width: "80%",
activeTab: 0,
frame: true,
defaults: {autoHeight: true},
items:[
{contentEl:'t1_content', title: 'Align'},
{contentEl:'t2_content', title: 'Preferences'},
{contentEl:'t3_content', title: 'About'},
]
});
});
views/tabs.mason view on Meta::CPAN
<p>
Here is a list of those that it relies on most:
</p>
<ul>
<li><a href="http://perl.org/">Perl</a></li>
<li><a href="http://bioperl.org/">BioPerl</a></li>
<li><a href="http://jquery.org">jQuery 1.4.2 (bundled)</a></li>
<li><a href="http://dev.sencha.com/deploy/ext-3.3.1/docs/">ExtJS 3.3.1 (bundled)</a></li>
<li><a href="http://iinteractive.com/moose/">Moose</a></li>
<li><a href="http://catalystframework.org">Catalyst</a></li>
</ul>
<p>
You can see a detailed list of our Perl dependencies in our <a href="https://github.com/GMOD/mimosa/blob/master/Build.PL">Build.PL</a>
</p>
<p>
Mimosa is also designed to interoperate with the <a href="http://www.gmod.org">Generic Model Organism Database (GMOD)</a> <a href="http://www.gmod.org/wiki/Chado">Chado</a> database schema. This means that you can deploy a Mimosa schema into a Ch...
</p>
</div>
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