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MAGE/BioSequence/BioSequence.pm  view on Meta::CPAN

                                         '__RANK' => '3',
                                         '__ORDERED' => 0
                                       }, 'Bio::MAGE::Association::End' )
                 }, 'Bio::MAGE::Association' ),
          'type',
          bless( {
                   '__SELF' => bless( {
                                        '__NAME' => undef,
                                        '__IS_REF' => 0,
                                        '__CARDINALITY' => '1',
                                        '__DOCUMENTATION' => 'The type of biosequence, i.e. gene, exon, UniGene cluster, fragment, BAC, EST, etc.',
                                        '__CLASS_NAME' => 'BioSequence',
                                        '__RANK' => undef,
                                        '__ORDERED' => undef
                                      }, 'Bio::MAGE::Association::End' ),
                   '__OTHER' => bless( {
                                         '__NAME' => 'type',
                                         '__IS_REF' => 1,
                                         '__CARDINALITY' => '1',
                                         '__DOCUMENTATION' => 'The type of biosequence, i.e. gene, exon, UniGene cluster, fragment, BAC, EST, etc.',
                                         '__CLASS_NAME' => 'OntologyEntry',
                                         '__RANK' => '4',
                                         '__ORDERED' => 0
                                       }, 'Bio::MAGE::Association::End' )
                 }, 'Bio::MAGE::Association' ),
          'species',
          bless( {
                   '__SELF' => bless( {
                                        '__NAME' => undef,
                                        '__IS_REF' => 0,

MAGE/BioSequence/BioSequence.pm  view on Meta::CPAN

=back


=item type

Methods for the C<type> association.


From the MAGE-OM documentation:

The type of biosequence, i.e. gene, exon, UniGene cluster, fragment, BAC, EST, etc.


=over


=item $val = $biosequence->setType($val)

The restricted setter method for the C<type> association.

classes.pm  view on Meta::CPAN

                                                                       'navigable' => 'false',
                                                                       'constraint' => undef,
                                                                       'class_name' => 'BioSequence'
                                                                     }
                                                         },
                                                         {
                                                           'other' => {
                                                                        'cardinality' => '1',
                                                                        'ordering' => 'unordered',
                                                                        'name' => 'type',
                                                                        'documentation' => 'The type of biosequence, i.e. gene, exon, UniGene cluster, fragment, BAC, EST, etc.',
                                                                        'class_id' => 'S.185',
                                                                        'aggregation' => 'none',
                                                                        'navigable' => 'true',
                                                                        'constraint' => {
                                                                                          'ordered' => 0,
                                                                                          'constraint' => 'rank: 4',
                                                                                          'rank' => '4'
                                                                                        },
                                                                        'class_name' => 'OntologyEntry'
                                                                      },
                                                           'self' => {
                                                                       'cardinality' => '1',
                                                                       'ordering' => 'unordered',
                                                                       'name' => undef,
                                                                       'documentation' => 'The type of biosequence, i.e. gene, exon, UniGene cluster, fragment, BAC, EST, etc.',
                                                                       'class_id' => 'S.231',
                                                                       'aggregation' => 'composite',
                                                                       'navigable' => 'false',
                                                                       'constraint' => undef,
                                                                       'class_name' => 'BioSequence'
                                                                     }
                                                         },
                                                         {
                                                           'other' => {
                                                                        'cardinality' => '0..1',