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> New modules coming soon include methods to create hybrid assemblies using both Illumina and PacBio
> data.

# 依赖

外部

* gcc-4: macOS 下的 clang 无法编译
* m4: 宏语言, 由 `autoreconf -fi` 生成, 是 `GNU autotools` 的一部分, 不用管
* swig: for Perl binding of jellyfish

自带

* Celera Assembler
* [jellyfish](https://github.com/gmarcais/Jellyfish): k-mer counting
* prepare: 无文档, 看起来是预处理数据用的.
* [Quorum](https://github.com/gmarcais/Quorum): Error correction for Illumina reads.
* samtools
* SOAPdenovo2
* SuperReads: masurca 的主程序. 这个是我们所需要的, 合并 reads 的功能就在这里. 源码约五万行.