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t/Bio/Tradis/Parser/Bam.t  view on Meta::CPAN

    QUAL        => 'HHHGGGGGGGHHHHHHHHHHHGHHHGHHGGGGGGGGGGFFFBFFCBAABA',
    X0          => '1',
    X1          => '0',
    BC          => 'TCTCGGTT',
    MD          => '50',
    RG          => '1#14',
    XG          => '0',
    NM          => '0',
    XM          => '0',
    XO          => '0',
    QT          => 'BBCDECBC',
    XT          => 'U',
    tq          => 'CCCBBFFFFF',
    tr          => 'TAAGAGTCAG',
    READ        => 'MS5_9521:1:1101:10072:14269#14	16	ENA|AE004091|AE004091.2	5	37	50M	*	0	0	AAGAGACCGGCGATTCTAGTGAAATCGAACGGGCAGGTCAATTTCCAACC	HHHGGGGGGGHHHHHHHHHHHGHHHGHHGGGGGGGGGGFFFBFFCBAABA	X0:i:1	X1:i:0	BC:Z:TCTCGGTT	MD:Z:50	RG:Z:1#14	XG:i:0	NM...
  },
  'read_info contains correct info for first line';

is $obj->is_mapped,  1, 'testing flag parsing - mapped';
is $obj->is_reverse, 1, 'testing flag parsing - reverse complement';

# Test reading second/last result
is $obj->next_read, 1, 'last result detected';
$read_info = $obj->read_info;
is_deeply $read_info,