App-Egaz
view release on metacpan or search on metacpan
&& brew install wang-q/tap/faops \
&& brew install wang-q/tap/sparsemem \
&& brew install wang-q/tap/multiz \
&& brew install wang-q/tap/intspan \
&& brew install wang-q/tap/tsv-utils \
&& rm -fr $(brew --cache)/*
# HOME bin
RUN true \
&& mkdir -p /home/linuxbrew/bin \
&& curl -L https://github.com/wang-q/ubuntu/releases/download/20190906/jkbin-egaz-ubuntu-1404-2011.tar.gz | \
tar -xvzf - \
&& mv x86_64/* /home/linuxbrew/bin/ \
&& curl -O http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/faToTwoBit \
&& chmod +x faToTwoBit \
&& mv faToTwoBit /home/linuxbrew/bin/
# RepeatMasker
# https://stackoverflow.com/questions/57629010/linuxbrew-curl-certificate-issue
RUN true \
&& export HOMEBREW_NO_ANALYTICS=1 \
t/default.lav view on Meta::CPAN
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t/default.lav view on Meta::CPAN
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t/default.psl view on Meta::CPAN
##matrix=blastz 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
##gapPenalties=blastz O=400 E=30
##blastzParms=O=400,E=30,K=3000,L=3000,M=0
149 75 0 0 2 5 2 47 + pig1 22929 21308 21537 cat 18803 4900 5171 5 24,100,16,29,55, 21308,21333,21433,21449,21482, 4900,4924,5026,5087,5116,
419 278 0 0 13 70 6 21 - pig1 22929 22162 22929 cat 18803 0 718 20 43,16,9,7,5,37,15,27,13,176,56,6,123,16,8,27,7,11,20,75, 0,43,61,71,80,90,132,147,174,196,372,432,441,564,581,589,629,647,669,692, 0,46,62,71,78,83,120,139,168,181,360,416,422,551,567...
332 193 0 0 7 38 6 17 - pig1 22929 15858 16421 cat 18803 9231 9773 14 33,91,8,20,37,11,8,18,38,43,7,23,68,120, 6508,6541,6643,6651,6676,6716,6731,6739,6768,6808,6851,6858,6883,6951, 9231,9266,9357,9367,9387,9424,9435,9444,9462,9500,9552,9561,9584,965...
353 198 0 0 4 16 3 26 - pig1 22929 13833 14400 cat 18803 10824 11401 8 53,10,56,80,30,91,47,184, 8529,8590,8600,8657,8739,8774,8865,8912, 10824,10877,10894,10950,11030,11060,11163,11217,
2209 1367 0 0 28 83 36 153 - pig1 22929 3208 6867 cat 18803 13865 17594 65 37,10,47,203,14,11,10,207,120,74,7,26,70,30,123,10,37,52,50,65,8,91,119,29,125,10,100,7,49,41,26,79,115,175,20,24,249,32,56,76,41,24,41,26,110,32,138,13,9,32,9,13,27,12,19,60,...
85 39 0 0 1 1 0 0 + pig2 22929 17468 17593 cat 18803 4900 5024 2 24,100, 17468,17493, 4900,4924,
378 234 0 0 8 62 8 20 - pig2 22929 18323 18997 cat 18803 85 717 17 31,14,31,13,163,13,54,85,12,7,35,7,10,28,5,18,86, 3932,3968,3982,4013,4036,4199,4212,4273,4359,4371,4379,4414,4421,4431,4493,4499,4520, 85,116,134,168,181,346,360,414,499,513,520,558,...
1547 1007 0 0 25 134 31 98 - pig2 22929 5829 8517 cat 18803 6628 9280 57 17,23,70,123,23,18,128,48,15,144,30,10,75,9,51,44,3,13,25,52,20,30,97,85,60,50,4,15,7,11,28,46,84,5,22,9,7,25,31,75,54,10,8,139,22,200,34,18,20,20,64,41,81,156,37,5,13, 14412,14...
343 208 0 0 4 9 2 19 - pig2 22929 2560 3120 cat 18803 10824 11394 7 83,43,79,36,91,43,176, 19809,19893,19937,20018,20059,20150,20193, 10824,10907,10950,11029,11065,11168,11218,
2144 1422 0 0 30 94 28 164 - pig2 22929 11727 15387 cat 18803 13865 17595 59 36,14,44,182,12,17,11,227,120,66,29,72,26,8,125,10,37,58,32,18,59,6,84,10,119,18,130,167,39,26,84,115,6,163,19,34,240,33,56,70,45,74,19,109,35,138,8,11,23,16,62,75,52,22,22,...
t/default.relative.lav view on Meta::CPAN
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t/default.relative.lav view on Meta::CPAN
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t/partition.t.lav view on Meta::CPAN
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t/partition.t.lav view on Meta::CPAN
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t/partition.t.norm.lav view on Meta::CPAN
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t/partition.t.norm.lav view on Meta::CPAN
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( run in 0.697 second using v1.01-cache-2.11-cpan-39bf76dae61 )