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README  view on Meta::CPAN

  esl_translate
      Alien::SeqAlignment::hmmer3->esl_translate (parameters & options);
    esl_translate - translate DNA sequence in six frames into individual

  esl_weight
      Alien::SeqAlignment::hmmer3->esl_weight (parameters & options);
    esl_weight - calculate sequence weights in MSA(s)

SEE ALSO
    *   HMMER <http://hmmer.org/>

        HMMER: biosequence analysis using profile hidden Markov models

        HMMER is used for searching sequence databases for sequence
        homologs, and for making sequence alignments. It implements methods
        using probabilistic models called profile hidden Markov models
        (profile HMMs).

        HMMER is often used together with a profile database, such as Pfam
        or many of the databases that participate in Interpro. But HMMER can

lib/Alien/SeqAlignment/hmmer3.pm  view on Meta::CPAN

=head2 esl_weight

  Alien::SeqAlignment::hmmer3->esl_weight (parameters & options);
esl_weight - calculate sequence weights in MSA(s)

=head1 SEE ALSO

=over 4

=item * L<HMMER|http://hmmer.org/>

HMMER: biosequence analysis using profile hidden Markov models

HMMER is used for searching sequence databases for sequence homologs, and for
making sequence alignments. It implements methods using probabilistic models
called profile hidden Markov models (profile HMMs).

HMMER is often used together with a profile database, such as Pfam or many of
the databases that participate in Interpro. But HMMER can also work with query
sequences, not just profiles, just like BLAST. For example, you can search a