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# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  test.hmm
# target sequence database:        Meredith169AA-Abrocoma_bennettii.stock
# output directed to file:         result_outclassic.res
# max ASCII text line length:      unlimited
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Meredith169AA  [M=6705]
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
          0 12909.9  47.3          0 4943.5  15.5    3.0  3  Abrocoma_bennettii  


Domain annotation for each sequence (and alignments):
>> Abrocoma_bennettii  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 3876.6   2.8         0         0       1    1789 [.       1    1788 [.       1    1795 [. 1.00
   2 ! 4102.0  13.3         0         0    2038    4546 ..    2037    4459 ..    2026    4465 .. 0.99
   3 ! 4943.5  15.5         0         0    4778    6705 .]    4691    6619 .]    4683    6619 .] 1.00

  Alignments for each domain:
  == domain 1  score: 3876.6 bits;  conditional E-value: 0
       Meredith169AA    1 cqfrsvmrmdymvyfsfftwiliplvvmcaiyldifyvirnklsqnfsssketgafygrefktakslflvlflfalswlplsiinciiyfpqvvlylgillshflilftifgnalvilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlcaisldrywavsraleynskrtprrikciiltvwliaa...
                          c+f  +m+m+ymv+fsfftwi+iplvvmcaiyl+if+virnklsqn+s+sketgafygref+takslflvlflfal+wlplsiinc++yfp+ +++lgillsh      i gnal ilavltsrslrapqnlflvslaaadilvatliipfslanellgywyfrrtwcevylaldvlfctssivhlc isldrywavsraleynskrtprrikciiltvwliaa...
  Abrocoma_bennettii    1 CSFLPTMSMEYMVFFSFFTWIFIPLVVMCAIYLNIFHVIRNKLSQNLSASKETGAFYGREFRTAKSLFLVLFLFALCWLPLSIINCALYFPDDIMFLGILLSHXXXXXXILGNALGILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCXISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAA...
                          99******************************************************************************************************************************************************************************************************************************...

  == domain 2  score: 4102.0 bits;  conditional E-value: 0
       Meredith169AA 2038 qkvnewfsrsdeiltsddshdggsekidllasdphdaliceservhskpvesniedkifgktyrrkaslpnlshiteitqerpltnklkrkrrttsglhpedfikkvdlavvqktpekinegtdqngqvmnitnnghenetkgdyvqkeknanpteslekesafrtkaepisssisnmelelnihsskapkknrlrrksstrhihalelvvsrnpsppnhtelq...
                            vnewfsrsde+ ts+d +d + ek+dl asdp++a++c++ r ++ + + ++edk+fgktyrrk sl nlsh + +tqe+plt+++krkrrt s+lhpedfikk+ la +qktpek ++g++q++qv++i nn+ enet+g  vq+ +n++p++slekes+  + +ep+sss ++mele+n++   ap+ nrlr++ss+r+++        + spp h elq...
  Abrocoma_bennettii 2037 XXVNEWFSRSDEMETSEDGCDWEXEKTDLKASDPQRAVTCATVRGCPSAGKGSVEDKVFGKTYRRKGSLANLSHSAXVTQECPLTSTVKRKRRTLSCLHPEDFIKKAGLAAAQKTPEKDTQGMKQSSQVTSIPNNN-ENETEGVAVQRXQNPSPVQSLEKESVPGMGTEPQSSSGNSMELEWNVCPPGAPQGNRLRKRSSARQVP--------HLSPPGHPELQ...
                          679**********************************************************************************************************************************985.9*******************************************************************........779********...

  == domain 3  score: 4943.5 bits;  conditional E-value: 0
       Meredith169AA 4778 pinssgtksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPivAKDLVIEPDVRPaFns...
                            nssg+ksafvtvrvldtpsppvnlkvteitkdsvsitwepplldggskiknyivekreatrksYaAvvTnchKnsWKidqLqeGcsYyFRVtAeneYGiGlpartadpiKvaeVpqPpgKitvdDVTRnSVSLsWtKPEHDGGSKIiqYiVEMQAKhseKWSeCARVKsLEAVITNLtQGEEYLFRVvAVNEKGRSDPRSLAVPi+AKDLVIEPDVRPaF+s...
  Abrocoma_bennettii 4691 XXNSSGMKSAFVTVRVLDTPSPPVNLKVTEITKDSVSITWEPPLLDGGSKIKNYIVEKREATRKSYAAVVTNCHKNSWKIDQLQEGCSYYFRVTAENEYGIGLPARTADPIKVAEVPQPPGKITVDDVTRNSVSLSWTKPEHDGGSKIIQYIVEMQAKHSEKWSECARVKSLEAVITNLTQGEEYLFRVVAVNEKGRSDPRSLAVPIIAKDLVIEPDVRPAFSS...
                          57******************************************************************************************************************************************************************************************************************************...



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (6705 nodes)
Target sequences:                            1  (6619 residues searched)
Passed MSV filter:                         1  (1); expected 0.0 (0.02)
Passed bias filter:                        1  (1); expected 0.0 (0.02)
Passed Vit filter:                         1  (1); expected 0.0 (0.001)
Passed Fwd filter:                         1  (1); expected 0.0 (1e-05)
Initial search space (Z):                  1  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.11s 00:00:01.33 Elapsed: 00:00:01.32
# Mc/sec: 33.62
//
[ok]