Bio-MUST-Tools-Mcl

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META.yml  view on Meta::CPAN

  Bio::MUST::Core::Ali::Stash: '0'
  Bio::MUST::Core::Constants: '0'
  Bio::MUST::Core::IdList: '0'
  Bio::MUST::Core::IdMapper: '0'
  Bio::MUST::Core::SeqId: '0'
  Bio::MUST::Core::Taxonomy: '0'
  Bio::MUST::Core::Utils: '0'
  Config::Any: '0'
  File::Basename: '0'
  Getopt::Euclid: '0'
  Modern::Perl: '0'
  Path::Class: '0'
  Smart::Comments: '0'
  Test::Most: '0'
  aliased: '0'
  autodie: '0'
  perl: '5.010'
  strict: '0'
  warnings: '0'
version: '0.210170'
x_generated_by_perl: v5.26.3

Makefile.PL  view on Meta::CPAN

    "Bio::MUST::Core::Ali::Stash" => 0,
    "Bio::MUST::Core::Constants" => 0,
    "Bio::MUST::Core::IdList" => 0,
    "Bio::MUST::Core::IdMapper" => 0,
    "Bio::MUST::Core::SeqId" => 0,
    "Bio::MUST::Core::Taxonomy" => 0,
    "Bio::MUST::Core::Utils" => 0,
    "Config::Any" => 0,
    "File::Basename" => 0,
    "Getopt::Euclid" => 0,
    "Modern::Perl" => 0,
    "Path::Class" => 0,
    "Smart::Comments" => 0,
    "Test::Most" => 0,
    "aliased" => 0,
    "autodie" => 0,
    "strict" => 0,
    "warnings" => 0
  },
  "VERSION" => "0.210170",
  "test" => {

bin/classify-mcl-out.pl  view on Meta::CPAN

#!/usr/bin/env perl
# PODNAME: classify-mcl-out.pl
# ABSTRACT: Classify MCL clusters based on taxonomic filters
# CONTRIBUTOR: Arnaud DI FRANCO <arnaud.difranco@gmail.com>

use Modern::Perl '2011';
use autodie;

use Config::Any;
use File::Basename;
use Getopt::Euclid qw(:vars);
use Path::Class;
use Smart::Comments;

use Bio::MUST::Core;
use Bio::MUST::Core::Utils qw(append_suffix);

bin/extract-mcl-out.pl  view on Meta::CPAN

#!/usr/bin/env perl
# PODNAME: extract-mcl-out.pl
# ABSTRACT: Extract orthogroups (FASTA files) from MCL clusters

use Modern::Perl '2011';
use autodie;

use File::Basename;
use Getopt::Euclid qw(:vars);
use Path::Class qw(dir file);
use Smart::Comments;

use Bio::MUST::Core;
use Bio::MUST::Core::Constants qw(:files);
use Bio::MUST::Core::Utils qw(change_suffix);

bin/tag-loc-ids.pl  view on Meta::CPAN

#!/usr/bin/env perl
# PODNAME: tag-loc-ids.pl
# ABSTRACT: Compute seq id organelle tags based on sequence identity
# CONTRIBUTOR: Mick VAN VLIERBERGHE <mvanvlierberghe@doct.uliege.be>

use Modern::Perl '2011';
use autodie;

use Path::Class qw(file);
use Smart::Comments;
use Getopt::Euclid qw(:vars);

use Bio::MUST::Core;
use Bio::MUST::Core::Utils 'change_suffix';
use aliased 'Bio::MUST::Core::Ali';
use aliased 'Bio::MUST::Core::SeqId';

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