SmotifTF
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lib/SmotifTF/GetSMotifsfromPDB.pm view on Meta::CPAN
&& defined($end)
&& defined($ressequence)
&& defined($sssequence)
&& defined($ArrayRef_coordchain) )
{
die "There was error: arguments for checklength subroutine\n";
# return;
}
my $checklength;
#count insertions in the start-end range
my $numinsertions = 0;
my $InRange = 0;
my $rescount = 0;
my %CAcoords;
my $firstresnum = 'NA';
my $lastresnum = 'NA';
PDBLINE: foreach my $line (@$ArrayRef_coordchain) {
#get the coordinate line info for any ATOM or HETATM record
next PDBLINE unless ( $line =~ /^(ATOM|HETATM)/ );
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