view release on metacpan or  search on metacpan

lib/Bio/EnsEMBL/Mapper.pm  view on Meta::CPAN

                id of 'source' sequence
    Arg  2      int $start
                start coordinate of 'source' sequence
    Arg  3      int $end
                end coordinate of 'source' sequence
    Arg  4      int $strand
                raw contig orientation (+/- 1)
    Arg  5      int $type
                nature of transform - gives the type of
                coordinates to be transformed *from*
    Function    inferior map method. Will only do ungapped unsplit mapping.
                Will return id, start, end strand in a list.
    Returntype  list of results
    Exceptions  none
    Caller      Bio::EnsEMBL::AssemblyMapper

=cut

sub fastmap {
   my ($self, $id, $start, $end, $strand, $type) = @_;