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t/test/resources/NEs view on Meta::CPAN
3a Staphylococcus phage 3A
a45 Cct4
a. aegypti Aedes aegypti
a. aeolicus Aquifex aeolicus
aag MPG
a central Anaplasma centrale
acetobacter xylinum Gluconacetobacter xylinus
acetogenium kivui Thermoanaerobacter kivui
acinetobacter calcoaceticus Acinetobacter calcoaceticus
t/test/resources/NEs view on Meta::CPAN
animals Metazoa
anthrax Anthrax
antiporter Slc9a1
a. oxidans Arthrobacter oxydans
a plasmid Expression vector pA5CAT
aquifex aeolicus Aquifex aeolicus
arabidopsis Arabidopsis
archaea Archaea
archaeoglobus fulgidus Archaeoglobus fulgidus
arthrobacter oxidans Arthrobacter oxydans
arthrobacter sp. Arthrobacter sp.
t/test/resources/NEs view on Meta::CPAN
bacillus sp. ts-23 Bacillus sp. TS-23
bacillus stearothermophilus Geobacillus stearothermophilus
bacillus subtilis Bacillus subtilis
bacillus subtilis bacteriophage spo1 Bacillus phage SPO1
bacillus thermoglucosidasius Geobacillus thermoglucosidasius
bacillus thermoproteolyticus Bacillus thermoproteolyticus
bacillus thuringiensis Bacillus thuringiensis
bacillus thuringiensis israelensis Bacillus thuringiensis serovar israelensis
bacillus thuringiensis subsp. israelensis Bacillus thuringiensis serovar israelensis
bacillus thuringiensis subsp. kurstaki Bacillus thuringiensis serovar kurstaki
bacillus thuringiensis subsp. morrisoni Bacillus thuringiensis serovar morrisoni
t/test/resources/NEs view on Meta::CPAN
r. meliloti Sinorhizobium meliloti
r. sphaeroides Rhodobacter sphaeroides
saccharomyces cerevisiae Saccharomyces cerevisiae
saccharomyces Saccharomyces
s. agalactiae Streptococcus agalactiae
s. albogriseolus Streptomyces albogriseolus
s. albus Streptomyces albus
salmonella typhimurium lt2 Salmonella typhimurium LT2
salmonella typhimurium Salmonella typhimurium
s. aureus Staphylococcus aureus
s. azureus Streptomyces azureus
t/test/resources/NEs view on Meta::CPAN
streptococcus pyogenes Streptococcus pyogenes
streptococcus salivarius Streptococcus salivarius
streptococcus salivarius subsp. thermophilus Streptococcus thermophilus
streptococcus sanguis Streptococcus sanguinis
streptococcus thermophilus Streptococcus thermophilus
streptomyces albogriseolus Streptomyces albogriseolus
streptomyces albus g Streptomyces albus G
streptomyces albus Streptomyces albus
streptomyces aureofaciens Streptomyces aureofaciens
streptomyces clavuligerus Streptomyces clavuligerus
streptomyces coelicolor a3(2) Streptomyces coelicolor A3(2)
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lib/Alvis/Tana.pm view on Meta::CPAN
}
}
if($char =~ /[^\n ]/)
{
$ERROR{$client} = "Non-eol/space at end of number. Got '$char' instead.";
!$debug || print STDERR "readnum: $ERROR{$client}\n";
return undef;
}
if(0 == $got)
{
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factpacks/Linux.fact view on Meta::CPAN
KuickShow => <reply> $who, A fast, comfortable and easy-to-use image viewer/browser. URL: http://www.millenniumx.de/kuickshow.html
Kuninstaller => <reply> $who, Program for uninstalling KDE applications.. URL: http://www.geocities.com/ResearchTriangle/System/3400/kuninstaller/index.html
KUrlRec => <reply> $who, Keeps URLs and converts the links to an HTML file to use with lynx.. URL: http://www.xnot.com/kshell/
KVEC => <reply> $who, A tool that can vectorize images using several graphic formats. URL: http://ourworld.compuserve.com/homepages/kkuhl/
kvideogen => <reply> $who, Modeline generator for XFree86. URL: http://without.netpedia.net/kvideogen/
KVideolist => <reply> $who, A videotape management utility. URL: http://bnvbbg.bamberg.baynet.de/home/ba1005/kde/kvlist.html
KVIrc => <reply> $who, Enhanced visual IRC client for X11/KDE. URL: http://www.kvirc.org/
Kvirus => <reply> $who, A board/puzzle game for the KDE Environment.. URL: http://members.tripod.com/sungsoo/
kvncviewer => <reply> $who, VNCviewer for the KDE Project. URL: http://studserver.uni-dortmund.de/~su0197/kde/kvnc/
kvoice => <reply> $who, A graphical frontend for easy handling of voice mails and faxes. URL: ftp://xpc56.mpi-hd.mpg.de/pub/kde/kvoice/
KVoiceControl => <reply> $who, Speech recognition system for the KDE Desktop. URL: http://www.kiecza.de/daniel/kde/index.html
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lib/Android/ElectricSheep/Automator.pm view on Meta::CPAN
'json' => $jsonstr,
'perl' => \%psdata
}
}
# ONLY FOR EMULATORS, it fixes the Geolocation to the
# specified coordinates (with 'latitude' and 'longitude').
# returns 1 on failure, 0 on success
# it needs that connect_device() to have been called prior to this call
sub geofix {
my ($self, $params) = @_;
lib/Android/ElectricSheep/Automator.pm view on Meta::CPAN
on what was matched.
=head2 B<C<geofix($params)>>
It fixes the geolocation of the device to the specified coordinates.
After this, app API calls to get current geolocation will result to this
position (unless they use their own, roundabout way).
C<$params> is a HASH_REF which should contain:
=over 4
lib/Android/ElectricSheep/Automator.pm view on Meta::CPAN
=head2 B<C<electric-sheep-dump-current-location.pl>>
Dump the GPS / geo-location position for the device from its various providers, if enabled.
electric-sheep-dump-current-location.pl --configfile config/myapp.conf --output geolocation.json
=head2 B<C<electric-sheep-emulator-geofix.pl>>
Set the GPS / geo-location position to the specified coordinates.
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lib/Ante/Deluvian/Dialog.pm view on Meta::CPAN
$self = bless {}, $class;
$self->{'rows'} = 25;
$self->{'cols'} = 80;
$self->{'stat'} = 0;
$self->{'from'} = 1;
$self->{'eoln'} = "";
$self->{'curpid'} = $$,
$self->{'getdrv'} = \&_procDfCmd,
$self->{'usable'} = 25;
$self->{'hcenter'} = 12;
$self->{'vcenter'} = 40;
lib/Ante/Deluvian/Dialog.pm view on Meta::CPAN
require Win32::Console;
my $cns = new Win32::Console();
my @info =$cns->Info();
($maxCol, $maxRow) = $cns->MaxWindow();
$self->{'gdrv'} = \&_procNetUse;
$self->{'eoln'} = "\n";
}
else {
($maxCol, $maxRow) = GetTerminalSize();
}
$self->{'cols'} = $maxCol;
lib/Ante/Deluvian/Dialog.pm view on Meta::CPAN
}
if (defined($self->{'prompt'})) {
$prompt = pop(@lines);
}
foreach my $line (@lines) {
print "$line" . $self->{'eoln'};
}
if (defined($prompt)) {
print "$prompt ";
}
}
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lib/Antispam/Toolkit/Types/Internal.pm
t/BerkeleyDB.t
t/Result.t
t/data/listed_email_7.txt
t/data/more_email.txt
t/release-eol.t
t/release-kwalitee.t
t/release-no-tabs.t
t/release-pod-coverage.t
t/release-pod-spell.t
t/release-pod-syntax.t
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README
SIGNATURE
dist.ini
lib/Antispam/httpBL.pm
t/httpBL.t
t/release-eol.t
t/release-kwalitee.t
t/release-no-tabs.t
t/release-pod-coverage.t
t/release-pod-syntax.t
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t/100-canonicalize-fragments.t
t/101-localize-errvar.t
t/lib/AnyMooseTest.pm
t/zzz-check-breaks.t
xt/author/00-compile.t
xt/author/eol.t
xt/author/kwalitee.t
xt/author/mojibake.t
xt/author/no-tabs.t
xt/author/pod-no404s.t
xt/author/pod-spell.t
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lib/AnyData.pm view on Meta::CPAN
$flags->{del_marker} = $del_marker;
$flags->{records} ||= $flags->{data};
$flags->{field_sep} ||= $flags->{sep_char} ||= $flags->{ad_sep_char};
$flags->{quote} ||= $flags->{quote_char} ||= $flags->{ad_quote_char};
$flags->{escape} ||= $flags->{escape_char}||= $flags->{ad_escape_char};
$flags->{record_sep}||= $flags->{eol} ||= $flags->{ad_eol};
# $flags->{skip_first_row}
my $parser = $parser_name->new ($flags);
if ($parser->{col_names} && !$col_names) {
my @cols;
@cols = ref $parser->{col_names} eq 'ARRAY'
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dist.ini
lib/AnyEvent/CurrentCost.pm
t/01-simple.t
t/02-timeouts.t
t/author-critic.t
t/author-test-eol.t
t/log/envy.reading.xml
t/release-common_spelling.t
t/release-kwalitee.t
t/release-no-tabs.t
t/release-pod-coverage.t
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xt/cover.pl
xt/cpan_changes.t
xt/cpan_meta.t
xt/dist_manifest.t
xt/distribution.t
xt/eol.t
xt/kwalitee.t
xt/minimumversion.t
xt/no_tabs.t
xt/perlcritic.t
xt/pod_coverage.t
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lib/AnyEvent/DateTime/Cron.pm
t/00-load.t
t/manifest.t
t/pod-coverage.t
t/pod.t
t/release-eol.t
t/release-no-tabs.t
t/release-pod-syntax.t
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lib/AnyEvent/FTP/Server/Context.pm view on Meta::CPAN
default => sub { 1 },
);
has ascii_layer => (
is => 'rw',
default => ':raw:eol(CRLF-Native)'
);
sub push_request
{
my($self, $con, $req) = @_;
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t/forward_deny.t
t/request.t
t/server.t
t/simple.t
xt/author/critic.t
xt/author/eol.t
xt/author/no_tabs.t
xt/author/pod.t
xt/author/pod_coverage.t
xt/author/pod_spelling_common.t
xt/author/pod_spelling_system.t
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t/path_class.t
t/path_class_nb.t
t/use.t
t/version.t
t/version_cache.t
xt/author/eol.t
xt/author/no_tabs.t
xt/author/pod.t
xt/author/pod_coverage.t
xt/author/pod_spelling_common.t
xt/author/pod_spelling_system.t
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t/message.t
t/request.t
t/response.t
xt/author/critic.t
xt/author/pod-spell.t
xt/author/test-eol.t
xt/release/changes_has_content.t
xt/release/cpan-changes.t
xt/release/dist-manifest.t
xt/release/distmeta.t
xt/release/kwalitee.t
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lib/AnyEvent/I3X/Workspace/OnDemand.pm
lib/AnyEvent/I3X/Workspace/OnDemand/UserGuide.pod
t/00-compile.t
t/01-basic.t
xt/author/distmeta.t
xt/author/eol.t
xt/author/minimum-version.t
xt/author/mojibake.t
xt/author/no-tabs.t
xt/author/pod-coverage.t
xt/author/pod-linkcheck.t
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lib/AnyEvent/IRC/Server.pm view on Meta::CPAN
fh => $fh,
);
$handle->{nick} = '*';
$handle->on_read(sub {
$handle->push_read(line => sub {
my ($handle, $line, $eol) = @_;
my $msg = parse_irc_msg($line);
$self->handle_msg($msg, $handle);
});
});
$self->handles->{refaddr($handle)} = $handle;
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t/client.t
t/request.t
t/response.t
t/server.t
t/simple.t
xt/author/eol.t
xt/author/no_tabs.t
xt/author/pod.t
xt/author/pod_coverage.t
xt/author/pod_spelling_common.t
xt/author/pod_spelling_system.t
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META.yml
Makefile.PL
README
lib/AnyEvent/InfluxDB.pm
t/basic.t
xt/author/eol.t
xt/author/no-tabs.t
xt/influxdb-q.t
xt/influxdb.t
xt/release/kwalitee.t
xt/release/pod-coverage.t
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t/03-sub-qos-1.t
t/03-sub-qos-2.t
t/04-multi-subs.t
t/Helpers.pm
t/author-critic.t
t/author-eol.t
t/author-no-tabs.t
t/author-pod-coverage.t
t/author-pod-linkcheck.t
t/author-pod-no404s.t
t/author-pod-syntax.t
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t/02-unexpected.t
t/03-two.t
t/04-timeout.t
t/05-error.t
t/author-critic.t
t/author-eol.t
t/author-no-tabs.t
t/author-pod-coverage.t
t/author-pod-no404s.t
t/author-pod-syntax.t
t/author-synopsis.t
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lib/AnyEvent/Multilog.pm view on Meta::CPAN
my $run = $self->_job->run;
my $errors = $run->delegate('error_handle');
my $error_cb; $error_cb = sub {
my ($h, $line, $eol) = @_;
$self->handle_error($line);
$h->push_read( line => $error_cb );
};
$errors->handle->push_read( line => $error_cb );
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t/00use.t
t/01api.t
t/02client.t
t/03token.t
t/author-critic.t
t/author-eol.t
t/author-no-tabs.t
t/release-cpan-changes.t
t/release-dist-manifest.t
t/release-distmeta.t
t/release-kwalitee.t
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t/Recursioner.pm
t/Retrier.pm
t/Timeouter.pm
t/author-critic.t
t/author-distmeta.t
t/author-eol.t
t/author-minimum-version.t
t/author-mojibake.t
t/author-no-tabs.t
t/author-pod-coverage.t
t/author-pod-linkcheck.t
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t/01-message.t
t/01-simple.t
t/02-devices.t
t/Helpers.pm
t/author-critic.t
t/author-eol.t
t/author-no-tabs.t
t/author-pod-coverage.t
t/author-pod-no404s.t
t/author-pod-syntax.t
t/author-synopsis.t
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debian/watch
dist.ini
lib/AnyEvent/Onkyo.pm
t/03-discover.t
t/author-critic.t
t/author-test-eol.t
t/release-common_spelling.t
t/release-kwalitee.t
t/release-no-tabs.t
t/release-pod-coverage.t
t/release-pod-linkcheck.t
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t/anyevent_open3_simple__run_no_args.t
t/anyevent_open3_simple__stdin.t
t/anyevent_open3_simple_process.t
t/gh1.t
xt/author/critic.t
xt/author/eol.t
xt/author/no_tabs.t
xt/author/pod.t
xt/author/pod_coverage.t
xt/author/pod_link.t
xt/author/pod_spelling_common.t
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lib/AnyEvent/Proc.pm view on Meta::CPAN
pid => $pid,
listeners => {
exit => delete $options{on_exit},
ttl_exceed => delete $options{on_ttl_exceed},
},
eol => "\n",
cv => $cv,
alive => 1,
waiter => $waiter,
waiters => {
in => [],
lib/AnyEvent/Proc.pm view on Meta::CPAN
|| $class;
map { $_->{proc} = $self } @xhs;
{
my $eol = quotemeta $self->_eol;
$self->{reol} = delete $options{reol} || qr{$eol};
}
if ( $options{ttl} ) {
$self->{timer} = AnyEvent->timer(
after => delete $options{ttl},
lib/AnyEvent/Proc.pm view on Meta::CPAN
sub _geth {
shift->{handles}->{ pop() };
}
sub _eol { shift->{eol} }
sub _reol { shift->{reol} }
sub _emit {
my ( $self, $name, @args ) = @_;
AE::log debug => "trapped $name";
if ( exists $self->{listeners}->{$name}
lib/AnyEvent/Proc.pm view on Meta::CPAN
$ok;
}
sub writeln {
my ( $self, @lines ) = @_;
$self->write( $_ . $self->_eol ) for @lines;
$self;
}
sub pipe {
my $self = shift;
lib/AnyEvent/Proc.pm view on Meta::CPAN
$ok;
}
sub _readline {
my ( $self, $what, $sub ) = @_;
$self->_push_read( $what => line => $self->_reol, $sub );
}
sub _readchunk {
my ( $self, $what, $bytes, $sub ) = @_;
$self->_push_read( $what => chunk => $bytes => $sub );
lib/AnyEvent/Proc.pm view on Meta::CPAN
$ok;
}
sub writeln {
my ( $self, @lines ) = @_;
my $eol = $self->{proc}->_eol;
$self->write( $_ . $eol ) for @lines;
$self;
}
sub pull { die 'UNIMPLEMENTED' }
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lib/AnyEvent/Handle.pm view on Meta::CPAN
$cb->($_[0], substr $_[0]{rbuf}, 0, $len, "");
1
}
};
=item line => [$eol, ]$cb->($handle, $line, $eol)
The callback will be called only once a full line (including the end of
line marker, C<$eol>) has been read. This line (excluding the end of line
marker) will be passed to the callback as second argument (C<$line>), and
the end of line marker as the third argument (C<$eol>).
The end of line marker, C<$eol>, can be either a string, in which case it
will be interpreted as a fixed record end marker, or it can be a regex
object (e.g. created by C<qr>), in which case it is interpreted as a
regular expression.
The end of line marker argument C<$eol> is optional, if it is missing (NOT
undef), then C<qr|\015?\012|> is used (which is good for most internet
protocols).
Partial lines at the end of the stream will never be returned, as they are
not marked by the end of line marker.
=cut
register_read_type line => sub {
my ($self, $cb, $eol) = @_;
if (@_ < 3) {
# this is faster then the generic code below
sub {
(my $pos = index $_[0]{rbuf}, "\012") >= 0
lib/AnyEvent/Handle.pm view on Meta::CPAN
(my $str = substr $_[0]{rbuf}, 0, $pos + 1, "") =~ s/(\015?\012)\Z// or die;
$cb->($_[0], $str, "$1");
1
}
} else {
$eol = quotemeta $eol unless ref $eol;
$eol = qr|^(.*?)($eol)|s;
sub {
$_[0]{rbuf} =~ s/$eol// or return;
$cb->($_[0], "$1", "$2");
1
}
}
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