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lib/Banal/Role/Fallback.pm view on Meta::CPAN
our $VERSION = '0.001';
# AUTHORITY
use namespace::autoclean;
use Moo::Role;
with 'Banal::Role::Fallback::Tiny';
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lib/Banal/Util/Mini.pm view on Meta::CPAN
use Data::Printer qw(p np); # During development only. TODO: comment this line out later.
use namespace::autoclean;
use Exporter::Shiny;
use vars qw(@EXPORT_OK);
BEGIN {
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lib/BankAccount/Validator/UK.pm view on Meta::CPAN
use 5.006;
use Data::Dumper;
use BankAccount::Validator::UK::Rule;
use Moo;
use namespace::autoclean;
has sc => (is => 'rw');
has an => (is => 'rw');
has mod => (is => 'rw');
has attempt => (is => 'rw');
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lib/Bat/Interpreter.pm view on Meta::CPAN
use Data::Dumper;
use Bat::Interpreter::Delegate::FileStore::LocalFileSystem;
use Bat::Interpreter::Delegate::Executor::PartialDryRunner;
use Bat::Interpreter::Delegate::LineLogger::Silent;
use File::Glob;
use namespace::autoclean;
our $VERSION = '0.025'; # VERSION
# ABSTRACT: Pure perl interpreter for a small subset of bat/cmd files
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lib/Benchmark/Featureset/ParamCheck/Base/MXPV.pm view on Meta::CPAN
our $AUTHORITY = 'cpan:TOBYINK';
our $VERSION = '0.007';
use parent qw(Benchmark::Featureset::ParamCheck::Base);
use MooseX::Params::Validate 0.21;
use namespace::autoclean;
sub run_named_check {
my ($class, $times, @args) = @_;
my $check = $class->get_named_check;
validated_hash(\@args, %$check) for 1 .. $times;
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* fix a crash in a warning message about deleting obsolete files
0.3 2011-05-18 16:16:59 America/Los_Angeles
* remove dependency on namespace::autoclean, which also pulls in Moose
* Returned seqs now have an undefined desc if no definition line is
in the BLAST database, instead of "No definition line found"
0.2 2011-04-08 15:11:03 America/Los_Angeles
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lib/Bio/Community.pm view on Meta::CPAN
use Moose;
use MooseX::NonMoose;
use MooseX::StrictConstructor;
use Method::Signatures;
use namespace::autoclean;
use Bio::Community::Member;
our $VERSION = '0.001008'; # 0.1.8
extends 'Bio::Root::Root';
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lib/Bio/FastParsers/Base.pm view on Meta::CPAN
package Bio::FastParsers::Base;
# ABSTRACT: Internal (base) class for all FastParsers
$Bio::FastParsers::Base::VERSION = '0.221230';
use Moose;
use namespace::autoclean;
use Bio::FastParsers::Types;
# public attributes
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lib/Bio/KEGG/API.pm view on Meta::CPAN
use v5.12;
use strict;
use warnings;
use Moose;
use namespace::autoclean;
use REST::Client;
use Net::FTP::Tiny qw(ftp_get);
our $VERSION = '0.02';
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lib/Bio/MUST/Apps/Debrief42.pm view on Meta::CPAN
package Bio::MUST::Apps::Debrief42;
# ABSTRACT: Main class for debrief-42 tool
# CONTRIBUTOR: Mick VAN VLIERBERGHE <mvanvlierberghe@doct.uliege.be>
$Bio::MUST::Apps::Debrief42::VERSION = '0.213470';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
use Smart::Comments;
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lib/Bio/MUST/Apps/HmmCleaner.pm view on Meta::CPAN
package Bio::MUST::Apps::HmmCleaner;
# ABSTRACT: Main class for HmmCleaner
# CONTRIBUTOR: Denis BAURAIN <denis.baurain@uliege.be>
$Bio::MUST::Apps::HmmCleaner::VERSION = '0.243280';
use Moose;
use namespace::autoclean;
use Smart::Comments -ENV;
use List::AllUtils qw/uniq max/;
use Modern::Perl;
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lib/Bio/MUST/Apps/OmpaPa/Blast.pm view on Meta::CPAN
package Bio::MUST::Apps::OmpaPa::Blast;
# ABSTRACT: internal class for XML BLAST parser
# CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
$Bio::MUST::Apps::OmpaPa::Blast::VERSION = '0.201810';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
use Smart::Comments;
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lib/Bio/MUST/Apps/TwoScalp/AlignAll.pm view on Meta::CPAN
# ABSTRACT: internal class for two-scalp tool
# CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
# CONTRIBUTOR: Valerian LUPO <valerian.lupo@doct.uliege.be>
$Bio::MUST::Apps::TwoScalp::AlignAll::VERSION = '0.243240';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
use Smart::Comments '###';
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lib/Bio/MUST/Core/Ali.pm view on Meta::CPAN
# ABSTRACT: Multiple sequence alignment
# CONTRIBUTOR: Catherine COLSON <ccolson@doct.uliege.be>
# CONTRIBUTOR: Arnaud DI FRANCO <arnaud.difranco@gmail.com>
$Bio::MUST::Core::Ali::VERSION = '0.250380';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
# use Smart::Comments;
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lib/Bio/MUST/Drivers/Blast/Database.pm view on Meta::CPAN
package Bio::MUST::Drivers::Blast::Database;
# ABSTRACT: Internal class for BLAST driver
$Bio::MUST::Drivers::Blast::Database::VERSION = '0.242720';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
use Carp;
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lib/Bio/Palantir/Explorer/ClusterFasta.pm view on Meta::CPAN
package Bio::Palantir::Explorer::ClusterFasta;
# ABSTRACT: Explorer internal class for handling ClusterFasta objects
$Bio::Palantir::Explorer::ClusterFasta::VERSION = '0.211420';
use Moose;
use namespace::autoclean;
use Data::UUID;
use Bio::MUST::Core;
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lib/Bio/Protease.pm view on Meta::CPAN
# ABSTRACT: Digest your protein substrates with customizable specificity
use Moose 1.23;
use MooseX::ClassAttribute;
use Bio::Protease::Types qw(ProteaseRegex ProteaseName);
use namespace::autoclean;
with qw(
Bio::ProteaseI
Bio::Protease::Role::Specificity::Regex
Bio::Protease::Role::WithCache
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lib/Bio/RNA/BarMap/Mapping.pm view on Meta::CPAN
use 5.012;
use warnings;
use Moose;
use MooseX::StrictConstructor;
use namespace::autoclean;
use autodie qw(:all);
use Scalar::Util qw(reftype);
use List::Util qw(any);
use File::Spec;
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lib/Bio/RNA/Barriers/Minimum.pm view on Meta::CPAN
use warnings;
use Moose;
use MooseX::StrictConstructor;
use Moose::Util::TypeConstraints;
use namespace::autoclean;
use autodie qw(:all);
use overload q{""} => 'stringify';
use Scalar::Util qw(blessed);
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lib/Bio/RNA/RNAaliSplit/AliFeature.pm view on Meta::CPAN
# different alignments of the same sequences
package Bio::RNA::RNAaliSplit::AliFeature;
use Moose;
use namespace::autoclean;
use version; our $VERSION = qv('0.11');
use diagnostics;
use Data::Dumper;
use Carp;
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lib/Bio/RNA/Treekin/MultiRecord.pm view on Meta::CPAN
use strict;
use warnings;
use Moose;
use MooseX::StrictConstructor;
use namespace::autoclean;
use autodie qw(:all);
extends 'IO::File::RecordStream';
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lib/Bio/SeqAlignment/Components/SeqMapping/Dataflow/Linear.pm view on Meta::CPAN
use Moose::Role;
use Carp;
use MCE;
use MCE::Candy;
use namespace::autoclean;
requires 'seq_align'; ## the method that does (pseudo)alignment mapping & reductions
requires 'cleanup';
sub sim_seq_search {
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lib/Bio/Tools/ProteinogenicAA.pm view on Meta::CPAN
use v5.12;
use strict;
use warnings;
use Moose;
use namespace::autoclean;
use Bio::Tools::ProteinogenicAA::AAInfo;
our $VERSION = '0.021';
has 'aminoacids' => (
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lib/Bio/Tools/Run/QCons.pm view on Meta::CPAN
# ABSTRACT: Run Qcons to analyze protein-protein contacts
use Mouse;
use autodie;
use namespace::autoclean;
use Capture::Tiny 'capture_merged';
use Bio::Tools::Run::QCons::Types 'Executable';
has 'program_name' => (
is => 'ro',
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lib/Bio/ViennaNGS/AnnoC.pm view on Meta::CPAN
use Bio::ViennaNGS::Util qw(sortbed);
use Bio::Tools::GFF;
use Path::Class;
use Carp;
use Moose;
use namespace::autoclean;
use version; our $VERSION = version->declare(eval($Bio::ViennaNGS::VERSION));
has 'accession' => (
is => 'rw',
isa => 'Str',
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lib/BioSAILs/Command/add.pm view on Meta::CPAN
package BioSAILs::Command::add;
use v5.10;
use strict;
use warnings FATAL => 'all';
use MooseX::App::Command;
use namespace::autoclean;
extends 'BioX::Workflow::Command::add';
command_short_description 'Add rules to an existing workflow.';
command_long_description 'Add rules to an existing workflow.';
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lib/BioSAILs/Integrations/Github.pm view on Meta::CPAN
package BioSAILs::Integrations::Github;
use MooseX::App::Role;
use namespace::autoclean;
use Git::Wrapper;
use Git::Wrapper::Plus::Ref::Tag;
use Git::Wrapper::Plus::Tags;
use Git::Wrapper::Plus::Branches;
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lib/BioX/Workflow/Command/Exceptions.pm view on Meta::CPAN
package BioX::Workflow::Command::Exceptions;
use Moose;
use namespace::autoclean;
has 'message' => (
is => 'rw',
isa => 'Str',
required => 0,
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cpanfile.snapshot view on Meta::CPAN
Carp 0
Module::Build::Tiny 0.007
Moose::Role 0
MooseX::Types::Moose 0
MooseX::Types::Path::Tiny 0.005
namespace::autoclean 0
perl 5.006
warnings 0
MooseX-Getopt-0.68
pathname: E/ET/ETHER/MooseX-Getopt-0.68.tar.gz
provides: