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lib/Badge/Depot/Plugin/Perl.pm view on Meta::CPAN
use warnings;
package Badge::Depot::Plugin::Perl;
use Moose;
use namespace::autoclean;
use MooseX::AttributeShortcuts;
use Types::Standard qw/Str Bool/;
use Types::URI qw/Uri/;
use JSON::MaybeXS 'decode_json';
use Path::Tiny;
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lib/Badge/Depot/Plugin/Travis.pm view on Meta::CPAN
use warnings;
package Badge::Depot::Plugin::Travis;
use Moose;
use namespace::autoclean;
use Types::Standard qw/Str HashRef/;
use Path::Tiny;
use JSON::MaybeXS 'decode_json';
with 'Badge::Depot';
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lib/Banal/Dist/Util.pm view on Meta::CPAN
use Path::Tiny qw(path);
use Data::Printer; # DEBUG aid.
use Exporter::Shiny qw( pause_config );
use namespace::autoclean;
# return username, password from ~/.pause
sub pause_config_alt # Hmmm. We've got a similar named routine in *::Pause.pm
{
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lib/Banal/Mini/Utils.pm view on Meta::CPAN
use Data::Printer qw(p np); # During development only. TODO: comment this line out later.
use namespace::autoclean;
use Exporter::Shiny;
use vars qw(@EXPORT_OK);
BEGIN {
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lib/Banal/Moosy/Mungers.pm view on Meta::CPAN
# AUTHORITY
use Data::Printer; # DEBUG purposes.
use Banal::Util::Mini qw(peek tidy_arrayify);
use namespace::autoclean;
use Exporter::Shiny qw(
mhs_dict
mhs_dictionary
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lib/Banal/Role/Fallback.pm view on Meta::CPAN
our $VERSION = '0.001';
# AUTHORITY
use namespace::autoclean;
use Moo::Role;
with 'Banal::Role::Fallback::Tiny';
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lib/Banal/Util/Mini.pm view on Meta::CPAN
use Data::Printer qw(p np); # During development only. TODO: comment this line out later.
use namespace::autoclean;
use Exporter::Shiny;
use vars qw(@EXPORT_OK);
BEGIN {
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lib/BankAccount/Validator/UK.pm view on Meta::CPAN
use 5.006;
use Data::Dumper;
use BankAccount::Validator::UK::Rule;
use Moo;
use namespace::autoclean;
has sc => (is => 'rw');
has an => (is => 'rw');
has mod => (is => 'rw');
has attempt => (is => 'rw');
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lib/Bat/Interpreter.pm view on Meta::CPAN
use Data::Dumper;
use Bat::Interpreter::Delegate::FileStore::LocalFileSystem;
use Bat::Interpreter::Delegate::Executor::PartialDryRunner;
use Bat::Interpreter::Delegate::LineLogger::Silent;
use File::Glob;
use namespace::autoclean;
our $VERSION = '0.025'; # VERSION
# ABSTRACT: Pure perl interpreter for a small subset of bat/cmd files
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lib/BatchSystem/SBS/Common.pm view on Meta::CPAN
warn "$@\nUsing LockFile::Simple";
$simpleLocker=LockFile::Simple->make(-format => '%f.lck',
-max => 20,
-delay => 1,
-nfs => 1,
-autoclean => 1
);
}
sub lockFile{
my $f=shift or CORE::die "must pass an argument to lockFile";
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lib/Benchmark/Featureset/ParamCheck/Base/MXPV.pm view on Meta::CPAN
our $AUTHORITY = 'cpan:TOBYINK';
our $VERSION = '0.007';
use parent qw(Benchmark::Featureset::ParamCheck::Base);
use MooseX::Params::Validate 0.21;
use namespace::autoclean;
sub run_named_check {
my ($class, $times, @args) = @_;
my $check = $class->get_named_check;
validated_hash(\@args, %$check) for 1 .. $times;
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lib/BenchmarkAnything/Storage/Frontend/Lib.pm view on Meta::CPAN
my ($self, $count) = @_;
require LockFile::Simple;
my $lock;
my $lockmgr = LockFile::Simple->make(-stale => 1, -autoclean => 1);
return unless $lock = $lockmgr->trylock('/tmp/process_raw_result_queue');
$count ||= 10;
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* fix a crash in a warning message about deleting obsolete files
0.3 2011-05-18 16:16:59 America/Los_Angeles
* remove dependency on namespace::autoclean, which also pulls in Moose
* Returned seqs now have an undefined desc if no definition line is
in the BLAST database, instead of "No definition line found"
0.2 2011-04-08 15:11:03 America/Los_Angeles
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lib/Bio/Community.pm view on Meta::CPAN
use Moose;
use MooseX::NonMoose;
use MooseX::StrictConstructor;
use Method::Signatures;
use namespace::autoclean;
use Bio::Community::Member;
our $VERSION = '0.001008'; # 0.1.8
extends 'Bio::Root::Root';
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lib/Bio/FastParsers/Base.pm view on Meta::CPAN
package Bio::FastParsers::Base;
# ABSTRACT: Internal (base) class for all FastParsers
$Bio::FastParsers::Base::VERSION = '0.221230';
use Moose;
use namespace::autoclean;
use Bio::FastParsers::Types;
# public attributes
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lib/Bio/KEGG/API.pm view on Meta::CPAN
use v5.12;
use strict;
use warnings;
use Moose;
use namespace::autoclean;
use REST::Client;
use Net::FTP::Tiny qw(ftp_get);
our $VERSION = '0.02';
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lib/Bio/MUST/Apps/Debrief42.pm view on Meta::CPAN
package Bio::MUST::Apps::Debrief42;
# ABSTRACT: Main class for debrief-42 tool
# CONTRIBUTOR: Mick VAN VLIERBERGHE <mvanvlierberghe@doct.uliege.be>
$Bio::MUST::Apps::Debrief42::VERSION = '0.213470';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
use Smart::Comments;
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lib/Bio/MUST/Apps/HmmCleaner.pm view on Meta::CPAN
package Bio::MUST::Apps::HmmCleaner;
# ABSTRACT: Main class for HmmCleaner
# CONTRIBUTOR: Denis BAURAIN <denis.baurain@uliege.be>
$Bio::MUST::Apps::HmmCleaner::VERSION = '0.243280';
use Moose;
use namespace::autoclean;
use Smart::Comments -ENV;
use List::AllUtils qw/uniq max/;
use Modern::Perl;
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lib/Bio/MUST/Apps/OmpaPa/Blast.pm view on Meta::CPAN
package Bio::MUST::Apps::OmpaPa::Blast;
# ABSTRACT: internal class for XML BLAST parser
# CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
$Bio::MUST::Apps::OmpaPa::Blast::VERSION = '0.251770';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
use Smart::Comments;
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lib/Bio/MUST/Apps/TwoScalp/AlignAll.pm view on Meta::CPAN
# ABSTRACT: internal class for two-scalp tool
# CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
# CONTRIBUTOR: Valerian LUPO <valerian.lupo@doct.uliege.be>
$Bio::MUST::Apps::TwoScalp::AlignAll::VERSION = '0.243240';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
use Smart::Comments '###';
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lib/Bio/MUST/Core/Ali.pm view on Meta::CPAN
# ABSTRACT: Multiple sequence alignment
# CONTRIBUTOR: Catherine COLSON <ccolson@doct.uliege.be>
# CONTRIBUTOR: Arnaud DI FRANCO <arnaud.difranco@gmail.com>
$Bio::MUST::Core::Ali::VERSION = '0.251140';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
# use Smart::Comments;
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lib/Bio/MUST/Drivers/Blast/Database.pm view on Meta::CPAN
package Bio::MUST::Drivers::Blast::Database;
# ABSTRACT: Internal class for BLAST driver
$Bio::MUST::Drivers::Blast::Database::VERSION = '0.251060';
use Moose;
use namespace::autoclean;
use autodie;
use feature qw(say);
use Carp;
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lib/Bio/Palantir/Explorer/ClusterFasta.pm view on Meta::CPAN
package Bio::Palantir::Explorer::ClusterFasta;
# ABSTRACT: Explorer internal class for handling ClusterFasta objects
$Bio::Palantir::Explorer::ClusterFasta::VERSION = '0.211420';
use Moose;
use namespace::autoclean;
use Data::UUID;
use Bio::MUST::Core;
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lib/Bio/Protease.pm view on Meta::CPAN
# ABSTRACT: Digest your protein substrates with customizable specificity
use Moose 1.23;
use MooseX::ClassAttribute;
use Bio::Protease::Types qw(ProteaseRegex ProteaseName);
use namespace::autoclean;
with qw(
Bio::ProteaseI
Bio::Protease::Role::Specificity::Regex
Bio::Protease::Role::WithCache
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lib/Bio/RNA/BarMap/Mapping.pm view on Meta::CPAN
use 5.012;
use warnings;
use Moose;
use MooseX::StrictConstructor;
use namespace::autoclean;
use autodie qw(:all);
use Scalar::Util qw(reftype);
use List::Util qw(any);
use File::Spec;
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lib/Bio/RNA/Barriers/Minimum.pm view on Meta::CPAN
use warnings;
use Moose;
use MooseX::StrictConstructor;
use Moose::Util::TypeConstraints;
use namespace::autoclean;
use autodie qw(:all);
use overload q{""} => 'stringify';
use Scalar::Util qw(blessed);
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lib/Bio/RNA/RNAaliSplit/AliFeature.pm view on Meta::CPAN
# different alignments of the same sequences
package Bio::RNA::RNAaliSplit::AliFeature;
use Moose;
use namespace::autoclean;
use version; our $VERSION = qv('0.11');
use diagnostics;
use Data::Dumper;
use Carp;
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lib/Bio/RNA/Treekin/MultiRecord.pm view on Meta::CPAN
use strict;
use warnings;
use Moose;
use MooseX::StrictConstructor;
use namespace::autoclean;
use autodie qw(:all);
extends 'IO::File::RecordStream';
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lib/Bio/SeqAlignment/Components/SeqMapping/Dataflow/Linear.pm view on Meta::CPAN
use Moose::Role;
use Carp;
use MCE;
use MCE::Candy;
use namespace::autoclean;
requires 'seq_align'; ## the method that does (pseudo)alignment mapping & reductions
requires 'cleanup';
sub sim_seq_search {