Result:
found more than 415 distributions - search limited to the first 2001 files matching your query
( run in 1.230 )
Authen-Smb
view release on metacpan or search on metacpan
smbval/rfcnb-priv.h view on Meta::CPAN
typedef char RFCNB_Hdr[4]; /* The header is 4 bytes long with */
/* char[0] as the type, char[1] the */
/* flags, and char[2..3] the length */
/* Macros to extract things from the header. These are for portability
between architecture types where we are worried about byte order */
#define RFCNB_Pkt_Hdr_Len 4
#define RFCNB_Pkt_Sess_Len 72
#define RFCNB_Pkt_Retarg_Len 10
B-C
view release on metacpan or search on metacpan
ramblings/remark.js view on Meta::CPAN
require=function(e,t,n){function i(n,s){if(!t[n]){if(!e[n]){var o=typeof require=="function"&&require;if(!s&&o)return o(n,!0);if(r)return r(n,!0);throw new Error("Cannot find module '"+n+"'")}var u=t[n]={exports:{}};e[n][0].call(u.exports,function(t)...
this.QUOTE_STRING_MODE={className:"string",begin:'"',end:'"',illegal:"\\n",contains:[this.BACKSLASH_ESCAPE]};this.PHRASAL_WORDS_MODE={begin:/\b(a|an|the|are|I|I'm|isn't|don't|doesn't|won't|but|just|should|pretty|simply|enough|gonna|going|wtf|so|such)...
SUBST.contains=EXPRESSIONS;return{aliases:["coffee","cson","iced"],keywords:KEYWORDS,contains:EXPRESSIONS.concat([{className:"comment",begin:"###",end:"###"},hljs.HASH_COMMENT_MODE,{className:"function",begin:"("+JS_IDENT_RE+"\\s*=\\s*)?(\\(.*\\))?\\...
}()},{}],8:[function(require,module,exports){exports.addClass=function(element,className){element.className=exports.getClasses(element).concat([className]).join(" ")};exports.removeClass=function(element,className){element.className=exports.getClasse...
events.on("slideChanged",updateHash);navigateByHash()}function navigateByHash(){var slideNoOrName=(dom.getLocationHash()||"").substr(1);events.emit("gotoSlide",slideNoOrName)}function updateHash(slideNoOrName){dom.setLocationHash("#"+slideNoOrName)}}...
BSON-XS
view release on metacpan or search on metacpan
bson/bson-stdint-win32.h view on Meta::CPAN
// 7.18.4 Limits of other integer types
#if !defined(__cplusplus) || defined(__STDC_CONSTANT_MACROS) // [ See footnote 224 at page 260
// 7.18.4.1 Macros for minimum-width integer constants
#define INT8_C(val) val##i8
#define INT16_C(val) val##i16
#define INT32_C(val) val##i32
#define INT64_C(val) val##i64
bson/bson-stdint-win32.h view on Meta::CPAN
#define UINT8_C(val) val##ui8
#define UINT16_C(val) val##ui16
#define UINT32_C(val) val##ui32
#define UINT64_C(val) val##ui64
// 7.18.4.2 Macros for greatest-width integer constants
// These #ifndef's are needed to prevent collisions with <boost/cstdint.hpp>.
// Check out Issue 9 for the details.
#ifndef INTMAX_C // [
# define INTMAX_C INT64_C
#endif // INTMAX_C ]
BackupPC-XS
view release on metacpan or search on metacpan
zlib/inflate.c view on Meta::CPAN
}
}
return 0;
}
/* Macros for inflate(): */
/* check function to use adler32() for zlib or crc32() for gzip */
#ifdef GUNZIP
# define UPDATE(check, buf, len) \
(state->flags ? crc32(check, buf, len) : adler32(check, buf, len))
Benchmark-DKbench
view release on metacpan or search on metacpan
data/wiki2.html view on Meta::CPAN
var partnerCode = "wikiavideodistroscale500364393303";
var retVal = "&usemoat=1" + "&sli1=" + sli1 + "&sli2=" + sli2 + "&moatpc=" + partnerCode;
return retVal;
}
vx.dvptrack('ww', vx.gdprMacros('{"ww":"GDPR:__IS_GDPR__:__GDPR_CONSENT__:__GDPR_VENDOR__:CCPA:__IS_CCPA__:__CCPA_FLAG__"}','ww', '1', '0','GB'));
var frtargets={"s1180":95,"s1003":95,"s995":95,"s3663":95,"s597":95,"s1032":95,"s596":95,"s1874":95,"s1684":95,"s593":95,"s594":95,"s199":95,"s261":95,"s260":95,"s1109":95,"s417":95,"s1040":95,"s262":95,"s254":95,"s988":95,"s3111":95,"s3709":95,"s25...
var gfrdly=0;
if ('s6474' in frtargets) {
var frspec=frtargets['s6474'];
var randnumber=(Math.random()*100);
data/wiki2.html view on Meta::CPAN
if (dvp_meta.adtagdefs[tagdef].url) {
if (dvp_meta.adtagdefs[tagdef].url.indexOf("3851171199385532") !== -1 || dvp_meta.adtagdefs[tagdef].url.indexOf("?iu=/34230109") !== -1) { // G1 migration
dvp_meta.adtagdefs[tagdef].url=g1_dfp(dvp_meta.adtagdefs[tagdef].url);
}
dvp_meta.adtagdefs[tagdef].url = dvp_meta.adtagdefs[tagdef].url.replace(/__DYN_WIDTH__/g,dvp_meta.width).replace(/__DYN_HEIGHT__/g,dvp_meta.height);
dvp_meta.adtagdefs[tagdef].url = vx.gdprMacros(dvp_meta.adtagdefs[tagdef].url, dvp_meta.adtagdefs[tagdef].cp, '1', '0','GB');
dvp_meta.adtagdefs[tagdef].url = dvp_meta.adtagdefs[tagdef].url.replace(/__IRISTV_CONTEXT__/g,((dvp_meta.vid && dvp_meta.vid.iristv_context)?encodeURIComponent(dvp_meta.vid.iristv_context):''));
dvp_meta.adtagdefs[tagdef].url = dvp_meta.adtagdefs[tagdef].url.replace(/__DYNAMIC_CUSTOM_PARAMS__/g, getCustomParams());
if(dvp_meta.adtagdefs[tagdef].url.indexOf("ca-video-pub-3851171199385532") !== -1 || dvp_meta.adtagdefs[tagdef].url.indexOf("?iu=/34230109") !== -1) {
if (gfrdly==1) {
//dvp_meta.adtagdefs[tagdef].friendly=true;
data/wiki2.html view on Meta::CPAN
function fireMRTagRequest() {
var tagurl = "https://a.jsrdn.com/prebid/tags/p22599-tp-fandom-desktop.json?aca=1&env.dyncp=__DYNAMIC_CUSTOM_PARAMS__&env.sd=fandom.com&env.gc=GB";
tagurl = tagurl.replace(/__DYN_WIDTH__/g,dvp_meta.width).replace(/__DYN_HEIGHT__/g,dvp_meta.height);
tagurl = vx.gdprMacros(tagurl, 'tp', '1', '0','GB');
tagurl = tagurl.replace(/__IRISTV_CONTEXT__/g,((dvp_meta.vid && dvp_meta.vid.iristv_context)?encodeURIComponent(dvp_meta.vid.iristv_context):''));
tagurl = tagurl.replace(/__DYNAMIC_CUSTOM_PARAMS__/g, getCustomParams());
// For tp tag add the IAS config parameters
tagurl = tagurl + getCustomParamsForIAS() + getCustomParamsForMoat();
Benchmark-Perl-Formance-Cargo
view release on metacpan or search on metacpan
share/P6STD/CORE.setting view on Meta::CPAN
my class Exception { }
my class Code { }
my class Block { }
my class Routine { }
my class Sub { }
my class Macro { }
my class Method { }
my class Submethod { }
my class Regex { }
my class Attribute { }
Benchmark-Perl-Formance
view release on metacpan or search on metacpan
bin/benchmark-perlformance view on Meta::CPAN
=over 4
=item L<Benchmark::Perl::Formance::Plugin::SpamAssassin|Benchmark::Perl::Formance::Plugin::SpamAssassin>
Macro benchmark. Run sa-learn learning tool from SpamAssassin, which stresses string, regex and data structures operations.
=item L<Benchmark::Perl::Formance::Plugin::Mem|Benchmark::Perl::Formance::Plugin::Mem>
Micro benchmarks. Stress memory operations.
bin/benchmark-perlformance view on Meta::CPAN
Micro benchmarks. Prime numbers.
=item L<Benchmark::Perl::Formance::Plugin::DPath|Benchmark::Perl::Formance::Plugin::DPath>
Macro benchmark. Use DPath to stress lookup, traversing and copying data structures.
=item L<Benchmark::Perl::Formance::Plugin::Rx|Benchmark::Perl::Formance::Plugin::Rx>
Micro benchmarks. Regular expressions, basic functions and pathological regex stressing.
bin/benchmark-perlformance view on Meta::CPAN
Micro benchmarks. Stress thread handling with shared variables.
=item L<Benchmark::Perl::Formance::Plugin::PerlCritic|Benchmark::Perl::Formance::Plugin::PerlCritic>
Macro benchmarks. Run PerlCritic on itself.
=item L<Benchmark::Perl::Formance::Plugin::Shootout|Benchmark::Perl::Formance::Plugin::Shootout>
Micro benchmarks. Runs some Perl benchmarks from the Language Shootout on alioth.debian.org.
=item L<Benchmark::Perl::Formance::Plugin::P6STD|Benchmark::Perl::Formance::Plugin::P6STD>
Macro benchmarks. Stress using Perl6/Perl5 tools around Perl6 STD.pm.
=back
=head1 AUTHOR
BerkeleyDB
view release on metacpan or search on metacpan
mkconsts.pl view on Meta::CPAN
DB_MEM_EXTFILE_DATABASE => '6.3.10',
DB_MEM_REP_SITE => '6.3.10',
) ;
sub enum_Macro
{
my $str = shift ;
my ($major, $minor, $patch) = split /\./, $str ;
my $macro =
mkconsts.pl view on Meta::CPAN
if ($val eq STRING)
{ push @names, { name => $key, type => "PV" } }
elsif ($val eq DEFINE)
{ push @names, $key }
else
{ push @names, { name => $key, macro => [enum_Macro($val), "#endif\n"] } }
}
warn "Updating constants.xs & constants.h...\n";
WriteConstants(
NAME => BerkeleyDB,
Biblio-COUNTER
view release on metacpan or search on metacpan
t/examples/jr1-warnings.csv view on Meta::CPAN
"Music Analysis","Blackwell Publishing","JSTOR","0262-5245","","0","0","0","0","0","0","0","0","2","0","2","4","8","7","1"
"Music Educators Journal","MENC: The National Association for Music Education","JSTOR","0027-4321","","0","0","0","0","0","0","0","0","10","13","24","20","67","59","8"
"Music Theory Spectrum","University of California Press","JSTOR","0195-6167","","0","0","0","0","0","0","0","0","3","0","2","2","7","5","2"
"Musical Quarterly","Oxford University Press","JSTOR","0027-4631","","5","5","2","9","14","3","3","6","7","13","33","41","141","118","21"
"Musical Times","Musical Times Publications, Ltd. ","JSTOR","0027-4666","","1","6","7","11","37","9","21","43","27","35","122","147","466","423","43"
"NBER Macroeconomics Annual","MIT Press","JSTOR","0889-3365","","0","0","0","0","0","0","0","0","0","0","0","0","0","0","0"
"Near Eastern Archaeology","American Schools of Oriental Research","JSTOR","1094-2076","","1","2","9","28","38","0","0","1","5","16","5","6","111","95","11"
"New England Quarterly","The New England Quarterly, Inc.","JSTOR","0028-4866","","39","33","115","104","81","5","29","14","46","220","31","45","762","602","141"
"New German Critique","New German Critique","JSTOR","0094-033X","","12","7","3","9","5","1","0","1","8","12","32","13","103","88","14"
"New Literary History","The Johns Hopkins University Press","JSTOR","0028-6087","1080-661X","1","2","12","24","30","3","1","2","3","19","16","15","128","105","21"
"New Phytologist","New Phytologist Trust","JSTOR","0028-646X","","1","26","19","30","37","0","7","5","3","16","2","16","162","136","25"
Bio-CUA
view release on metacpan or search on metacpan
lib/Bio/CUA/CodonTable.pm view on Meta::CPAN
-- based on complete mitochondrial genome of honeybee
-- Crozier and Crozier (1993)
--
-- Version 3.2 - 6/24/95
-- Code Comments
-- 10 Alternative Ciliate Macronuclear renamed to Euplotid Macro...
-- 15 Bleharisma Macro.. code added
-- 5 Invertebrate Mito.. GTG allowed as alternate initiator
-- 11 Eubacterial renamed to Bacterial as most alternate starts
-- have been found in Achea
--
--
lib/Bio/CUA/CodonTable.pm view on Meta::CPAN
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
} ,
{
name "Blepharisma Macronuclear" ,
id 15 ,
ncbieaa "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
sncbieaa "-----------------------------------M----------------------------"
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Bio-Chaos
view release on metacpan or search on metacpan
lib/Bio/Chaos/xsl/chado-insert-macros.xsl view on Meta::CPAN
<!-- Creates macros for repeated cv, cvterm and organism elements -->
<!-- All macros must be fully expanded before using this -->
<!-- Macro IDs correspond to unique key constraints in chado db -->
<!-- UK constraints are combined using double-underscore: '__' -->
<!-- NOTES: This transform uses some fairly advanced XSL concepts -->
<!-- (this is necessary for determining uniqueness of cvterms) -->
Bio-Das-ProServer
view release on metacpan or search on metacpan
coordinates/registry_coordinates.xml view on Meta::CPAN
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS342" taxid="9615" source="Chromosome" authority="VEGA" test_range="">VEGA,Chromosome,Canis familiaris</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS123" taxid="9600" source="Chromosome" authority="PPYG" test_range="" version="2">PPYG_2,Chromosome,Pongo pygmaeus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS59" taxid="9371" source="Chromosome" authority="TENREC" test_range="">TENREC,Chromosome,Echinops telfairi</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS118" taxid="6239" source="Chromosome" authority="WS" test_range="">WS,Chromosome,Caenorhabditis elegans</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS169" taxid="8090" source="Ultracontig" authority="MEDAKA" test_range="" version="1">MEDAKA_1,Ultracontig,Oryzias latipes</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS316" taxid="9315" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Macropus eugenii</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS379" taxid="7176" source="Supercontig" authority="CpipJ" test_range="" version="1">CpipJ_1,Supercontig,Culex quinquefasciatus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS234" taxid="7719" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Ciona intestinalis</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS68" taxid="9598" source="Chromosome" authority="CHIMP" test_range="" version="2.1">CHIMP_2.1,Chromosome,Pan troglodytes</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS401" taxid="7240" source="Protein Sequence" authority="Ensembl" test_range="">Ensembl,Protein Sequence,Drosophila simulans</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS314" taxid="9315" source="Scaffold" authority="Meug" test_range="" version="1.0">Meug_1.0,Scaffold,Macropus eugenii</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS338" taxid="7227" source="Chromosome" authority="BDGP" test_range="" version="5.13">BDGP_5.13,Chromosome,Drosophila melanogaster</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS226" taxid="6239" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Caenorhabditis elegans</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS245" taxid="7227" source="Protein Sequence" authority="Ensembl" test_range="">Ensembl,Protein Sequence,Drosophila melanogaster</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS181" taxid="37347" source="Gene Scaffold" authority="TREESHREW" test_range="">TREESHREW,Gene Scaffold,Tupaia belangeri</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS64" taxid="13616" source="Chromosome" authority="BROADO" test_range="" version="3">BROADO_3,Chromosome,Monodelphis domestica</COORDINATES>
coordinates/registry_coordinates.xml view on Meta::CPAN
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS148" taxid="9685" source="Scaffold" authority="CAT" test_range="">CAT,Scaffold,Felis catus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS173" taxid="9365" source="Gene Scaffold" authority="HEDGEHOG" test_range="">HEDGEHOG,Gene Scaffold,Erinaceus europaeus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS476" taxid="4533" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Oryza brachyantha</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS89" taxid="9365" source="Chromosome" authority="HEDGEHOG" test_range="">HEDGEHOG,Chromosome,Erinaceus europaeus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS133" taxid="30538" source="Chromosome" authority="vicPac" test_range="" version="1">vicPac_1,Chromosome,Vicugna pacos</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS325" taxid="9315" source="Chromosome" authority="VEGA" test_range="" version="35">VEGA_35,Chromosome,Macropus eugenii</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS110" taxid="7955" source="Scaffold" authority="ZFISH" test_range="" version="7">ZFISH_7,Scaffold,Danio rerio</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS30" taxid="10090" source="Chromosome" authority="NCBI m" test_range="" version="34">NCBI m_34,Chromosome,Mus musculus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS351" taxid="9593" source="Supercontig" authority="gorGor" test_range="" version="2">gorGor_2,Supercontig,Gorilla gorilla</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS158" taxid="8364" source="Scaffold" authority="JGI" test_range="" version="4.1">JGI_4.1,Scaffold,Xenopus tropicalis</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS95" taxid="10090" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Mus musculus</COORDINATES>
coordinates/registry_coordinates.xml view on Meta::CPAN
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS179" taxid="42254" source="Gene Scaffold" authority="COMMON_SHREW" test_range="" version="1">COMMON_SHREW_1,Gene Scaffold,Sorex araneus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS42" taxid="10090" source="Contig" authority="NCBI m" test_range="" version="35">NCBI m_35,Contig,Mus musculus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS295" taxid="31033" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Takifugu rubripes</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS426" taxid="5062" source="Protein Sequence" authority="Ensembl" test_range="">Ensembl,Protein Sequence,Aspergillus oryzae</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS367" taxid="135651" source="Supercontig" authority="CB" test_range="" version="601">CB_601,Supercontig,Caenorhabditis brenneri</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS345" taxid="9315" source="Chromosome" authority="VEGA" test_range="">VEGA,Chromosome,Macropus eugenii</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS219" taxid="7955" source="Chromosome" authority="Zv" test_range="" version="8">Zv_8,Chromosome,Danio rerio</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS430" taxid="33178" source="Supercontig" authority="CADR" test_range="" version="E">CADR_E,Supercontig,Aspergillus terreus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS266" taxid="9978" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Ochotona princeps</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS439" taxid="4896" source="Protein Sequence" authority="Ensembl" test_range="">Ensembl,Protein Sequence,Schizosaccharomyces pombe</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS20" taxid="10116" source="Protein Sequence" authority="Ensembl" test_range="">Ensembl,Protein Sequence,Rattus norvegicus</COORDINATES>
coordinates/registry_coordinates.xml view on Meta::CPAN
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS138" taxid="9606" source="Supercontig" authority="NCBI" test_range="" version="36">NCBI_36,Supercontig,Homo sapiens</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS365" taxid="135651" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Caenorhabditis brenneri</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS469" taxid="9103" source="Chromosome" authority="UMD" test_range="" version="2">UMD_2,Chromosome,Meleagris gallopavo</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS427" taxid="5062" source="Chromosome" authority="CADR" test_range="" version="E">CADR_E,Chromosome,Aspergillus oryzae</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS341" taxid="9823" source="Chromosome" authority="Sscrofa" test_range="" version="9">Sscrofa_9,Chromosome,Sus scrofa</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS315" taxid="9315" source="Gene Scaffold" authority="Meug" test_range="" version="1.0">Meug_1.0,Gene Scaffold,Macropus eugenii</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS235" taxid="7719" source="Protein Sequence" authority="Ensembl" test_range="">Ensembl,Protein Sequence,Ciona intestinalis</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS246" taxid="9371" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Echinops telfairi</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS113" taxid="39946" source="Chromosome" authority="BGI" test_range="" version="2005-01">BGI_2005-01,Chromosome,Oryza sativa indica</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS313" taxid="9606" source="Supercontig" authority="GRCh" test_range="" version="37">GRCh_37,Supercontig,Homo sapiens</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS425" taxid="5062" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Aspergillus oryzae</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS225" taxid="9913" source="Protein Sequence" authority="Ensembl" test_range="">Ensembl,Protein Sequence,Bos taurus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS124" taxid="99883" source="Chromosome" authority="TETRAODON" test_range="">TETRAODON,Chromosome,Tetraodon nigroviridis</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS317" taxid="9315" source="Protein Sequence" authority="Ensembl" test_range="">Ensembl,Protein Sequence,Macropus eugenii</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS60" taxid="9031" source="Chromosome" authority="WASHUC" test_range="" version="1">WASHUC_1,Chromosome,Gallus gallus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS380" taxid="7217" source="Gene_ID" authority="Ensembl" test_range="">Ensembl,Gene_ID,Drosophila ananassae</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS61" taxid="69293" source="Chromosome" authority="BROADS" test_range="" version="1">BROADS_1,Chromosome,Gasterosteus aculeatus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS189" taxid="30608" source="Gene Scaffold" authority="micMur" test_range="" version="1">micMur_1,Gene Scaffold,Microcebus murinus</COORDINATES>
<COORDINATES uri="http://www.dasregistry.org/dasregistry/coordsys/CS_DS337" taxid="9483" source="Supercontig" authority="calJac" test_range="" version="3">calJac_3,Supercontig,Callithrix jacchus</COORDINATES>
Bio-FastParsers
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test/Meredith169AA.stock view on Meta::CPAN
Lama_glama CQFRSVMRMDYMVYFSFFTWIFIPLVVMCAIYLDIFYIIRNKLSQNFSSSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCITYFPQVVLNLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAAVISLPPLIYKGDQSP...
Laonastes_aenigmamus CKFRSVMSMDYMVFFSFFTWIFIPLVVMCAIYLDIFYIIRNKLRQNFSASKETSVFYGREFRTAKSLFLVLFLFALCWLPLSIINCAIYFPDYVMLLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAXVISLP...
Lemur_catta CQFRSVIRMDYMVYFSFFTGILIPLVVMCVIYLDIFYIIRNKLSQNFSSSKETSAFYGREFKTAKSLSLVLFLFAVSWLPLSIMNCVIYFPQVVLYLGILLSHFLILFTIFGNSLVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAAVISLXPLIYKGDQG...
Loxodonta_africanus CQFRSVMRMDYMVYFSFFTWILIPLVIMCAIYLDIFYVIRNKLNQKFSSSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSIVNCITYFSQAVIYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALQYNSKRTPRRIKCVILTVWLIAAAISLPP...
Macaca_mulatta CQFLSVMRMDYMVYFSFFTWIFIPLVVMCAIYLDIFYIIRNKLSQNFSNSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCIIHFPQLVLYMGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFWRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAAVISLPPLIYKG...
Macropus_eugenii CRFRSVMRMDYMVYFSFFTWILVPLVIMCAIYMDIFYVIRNKLRQNFSGSKETGAFYGREFKTAKSLLLILFLFAISWLPLSIINCVSYFPEELLCLGILLSHXXXXFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLIAAFISLPPLIY...
Macrotis_lagotis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRHTWCEVYLALDVLFCTSSIVHLCAISLDRYWSVSRALEYNSKRTPRRIKGIILTVWLIAAFISLPPLIY...
Manis_pentadactyla CQFRSVMRMDYMVYFSFFTWIFIPLLVMCAIYLDIFYVIRNKLNQNFSSSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSITNCIIYFPQVILYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAAVISLPPL...
Manis_tricuspis CQFRSVMRMDYMVYFSFFTWIFIPLLVMCAIYLDIFYVIRNKLNQNFSSSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSITNCIIYFPQVMLYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAAVISLPPLIYK...
Megaderma_lyra CQFRSVMRMDYMVYFSFFTWIFIPLVIMCVIYIDIFYVIRHKLSQNFSGSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCVIYFPQVMLYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAAVISLPPLVYKG...
Megaptera_novaeangliae CQFRSVMRMDYMVYFSFFTWIFIPLVVMCAIYLDIFYVIRNKLNQNFSNSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSVVNCIIYFPQVVLYLGILLSHXXILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFWRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCVILTVWLIAAVIS...
Meles_meles CKFRSVVRMDYMVYFSFFTWILIPLIVMCAIYLDIFYVIRNKLNQNFSSSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCITYFPQIFLYLGILLSHFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAAVISLPPLIYKGDQG...
Bio-Genex
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data/db_tables/species.xml view on Meta::CPAN
common_names="common sunflower"
ncbi_taxonomy_acc="4232"
relevant_urls="http://www.ncbi.nlm.nih.gov:80/htbin-post/Taxonomy/wgetorg?mode=Tree&id=4232&lvl=3&keep=1&srchmode=1&unlock"/>
<species classification_group="1"
general_classification="animal:marsupial"
primary_scientific_name="Macropus sp."
common_names="kangaroo"
ncbi_taxonomy_acc="9322"
relevant_urls="http://www.ncbi.nlm.nih.gov:80/htbin-post/Taxonomy/wgetorg?mode=Tree&id=9322&lvl=3&keep=1&srchmode=1&unlock"/>
<species classification_group="1"
general_classification="animal:marsupial"
primary_scientific_name="Macropus rufus"
common_names="red kangaroo"
ncbi_taxonomy_acc="9321"
relevant_urls="http://www.ncbi.nlm.nih.gov:80/htbin-post/Taxonomy/wgetorg?mode=Tree&id=9321&lvl=3&keep=1&srchmode=1&unlock"/>
<species classification_group="1"
general_classification="animal:monotreme"
Bio-LITE-Taxonomy-RDP
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t/data/bergeyTrainingTree.xml view on Meta::CPAN
<TreeNode name="Caenibacterium" taxid="1798" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="919"></TreeNode>
<TreeNode name="Hylemonella" taxid="1813" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="920"></TreeNode>
<TreeNode name="Simplicispira" taxid="9943" rank="genus" parentTaxid="1773" leaveCount="2" genusIndex="921"></TreeNode>
<TreeNode name="Brachymonas" taxid="1796" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="922"></TreeNode>
<TreeNode name="Giesbergeria" taxid="9942" rank="genus" parentTaxid="1773" leaveCount="5" genusIndex="923"></TreeNode>
<TreeNode name="Macromonas" taxid="1817" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="924"></TreeNode>
<TreeNode name="Curvibacter" taxid="8565" rank="genus" parentTaxid="1773" leaveCount="3" genusIndex="925"></TreeNode>
<TreeNode name="Hydrogenophaga" taxid="1807" rank="genus" parentTaxid="1773" leaveCount="7" genusIndex="926"></TreeNode>
<TreeNode name="Polaromonas" taxid="1822" rank="genus" parentTaxid="1773" leaveCount="3" genusIndex="927"></TreeNode>
<TreeNode name="Acidovorax" taxid="1783" rank="genus" parentTaxid="1773" leaveCount="10" genusIndex="928"></TreeNode>
<TreeNode name="Diaphorobacter" taxid="1805" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="929"></TreeNode>
t/data/bergeyTrainingTree.xml view on Meta::CPAN
<TreeNode name="Listeria" taxid="22114" rank="genus" parentTaxid="22113" leaveCount="10" genusIndex="1115"></TreeNode>
<TreeNode name="Brochothrix" taxid="22115" rank="genus" parentTaxid="22113" leaveCount="3" genusIndex="1116"></TreeNode>
<TreeNode name="Incertae Sedis XI" taxid="22179" rank="family" parentTaxid="22003" leaveCount="6" genusIndex="-1"></TreeNode>
<TreeNode name="Gemella" taxid="22180" rank="genus" parentTaxid="22179" leaveCount="6" genusIndex="1117"></TreeNode>
<TreeNode name='"Staphylococcaceae"' taxid="22164" rank="family" parentTaxid="22003" leaveCount="51" genusIndex="-1"></TreeNode>
<TreeNode name="Macrococcus" taxid="22167" rank="genus" parentTaxid="22164" leaveCount="4" genusIndex="1118"></TreeNode>
<TreeNode name="Jeotgalicoccus" taxid="22166" rank="genus" parentTaxid="22164" leaveCount="3" genusIndex="1119"></TreeNode>
<TreeNode name="Salinicoccus" taxid="22168" rank="genus" parentTaxid="22164" leaveCount="5" genusIndex="1120"></TreeNode>
<TreeNode name="Staphylococcus" taxid="22165" rank="genus" parentTaxid="22164" leaveCount="39" genusIndex="1121"></TreeNode>
<TreeNode name='"Sporolactobacillaceae"' taxid="22155" rank="family" parentTaxid="22003" leaveCount="13" genusIndex="-1"></TreeNode>
<TreeNode name='"Sporolactobacillaceae Incertae Sedis"' taxid="22159" rank="genus" parentTaxid="22155" leaveCount="4" genusIndex="1122"></TreeNode>
Bio-LITE-Taxonomy
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t/data/bergeyTrainingTree.xml view on Meta::CPAN
<TreeNode name="Caenibacterium" taxid="1798" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="919"></TreeNode>
<TreeNode name="Hylemonella" taxid="1813" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="920"></TreeNode>
<TreeNode name="Simplicispira" taxid="9943" rank="genus" parentTaxid="1773" leaveCount="2" genusIndex="921"></TreeNode>
<TreeNode name="Brachymonas" taxid="1796" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="922"></TreeNode>
<TreeNode name="Giesbergeria" taxid="9942" rank="genus" parentTaxid="1773" leaveCount="5" genusIndex="923"></TreeNode>
<TreeNode name="Macromonas" taxid="1817" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="924"></TreeNode>
<TreeNode name="Curvibacter" taxid="8565" rank="genus" parentTaxid="1773" leaveCount="3" genusIndex="925"></TreeNode>
<TreeNode name="Hydrogenophaga" taxid="1807" rank="genus" parentTaxid="1773" leaveCount="7" genusIndex="926"></TreeNode>
<TreeNode name="Polaromonas" taxid="1822" rank="genus" parentTaxid="1773" leaveCount="3" genusIndex="927"></TreeNode>
<TreeNode name="Acidovorax" taxid="1783" rank="genus" parentTaxid="1773" leaveCount="10" genusIndex="928"></TreeNode>
<TreeNode name="Diaphorobacter" taxid="1805" rank="genus" parentTaxid="1773" leaveCount="1" genusIndex="929"></TreeNode>
t/data/bergeyTrainingTree.xml view on Meta::CPAN
<TreeNode name="Listeria" taxid="22114" rank="genus" parentTaxid="22113" leaveCount="10" genusIndex="1115"></TreeNode>
<TreeNode name="Brochothrix" taxid="22115" rank="genus" parentTaxid="22113" leaveCount="3" genusIndex="1116"></TreeNode>
<TreeNode name="Incertae Sedis XI" taxid="22179" rank="family" parentTaxid="22003" leaveCount="6" genusIndex="-1"></TreeNode>
<TreeNode name="Gemella" taxid="22180" rank="genus" parentTaxid="22179" leaveCount="6" genusIndex="1117"></TreeNode>
<TreeNode name='"Staphylococcaceae"' taxid="22164" rank="family" parentTaxid="22003" leaveCount="51" genusIndex="-1"></TreeNode>
<TreeNode name="Macrococcus" taxid="22167" rank="genus" parentTaxid="22164" leaveCount="4" genusIndex="1118"></TreeNode>
<TreeNode name="Jeotgalicoccus" taxid="22166" rank="genus" parentTaxid="22164" leaveCount="3" genusIndex="1119"></TreeNode>
<TreeNode name="Salinicoccus" taxid="22168" rank="genus" parentTaxid="22164" leaveCount="5" genusIndex="1120"></TreeNode>
<TreeNode name="Staphylococcus" taxid="22165" rank="genus" parentTaxid="22164" leaveCount="39" genusIndex="1121"></TreeNode>
<TreeNode name='"Sporolactobacillaceae"' taxid="22155" rank="family" parentTaxid="22003" leaveCount="13" genusIndex="-1"></TreeNode>
<TreeNode name='"Sporolactobacillaceae Incertae Sedis"' taxid="22159" rank="genus" parentTaxid="22155" leaveCount="4" genusIndex="1122"></TreeNode>
Bio-MUST-Apps-HmmCleaner
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test/GNTPAN12210.ali view on Meta::CPAN
MAE********PSQASTPAPATQPRPLQSPAPAPPPTPAPSPASAPTPAPTPAPAPAPVAAPAGSTGTGGPGVGSGGTG*******SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Mus musculus@ENSMUSP00000098017
MAE********PSQAPNPVPAAQPRPLHSPAPAPTSTPAPSPASASTPAPTPAPAPAPAAAPAGSTGSGGAGVG************SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFK******************...
>Monodelphis domestica@ENSMODP00000018493
***************************************************************GAPGSGTPGVGSGAPG*******AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Macropus eugenii@ENSMEUP00000005117
MAE********PPQAQAQVPTQT**QAQAQAPVPEPAPAPAPAPAPVPAPTP***PGPAAAPAGAPGSGTPGAGSAAPG*******AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000015773
*********************************************************************************************************************************************************************************A*DHVSH*LENVSEDEISRLLGMVVDVENLFMSV***HKEEDTDPKQVY*FL*********************...
>Xenopus tropicalis@ENSXETP00000004923
LIEAPEGLSPAEEGRNVPIQLTGSPAITQATEGSSEGIKEPETPNPNPRASPSGLEAPAA******GHTATGTGGGSSS*******STSDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPN*****P*QTAPRMDLQQPAASLTEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMIRPVVEGSL...
test/GNTPAN12210.ali view on Meta::CPAN
**********************************************************************************************************EEGAARAPLRWPELEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILHRGKPVVEGSL...
>Dasypus novemcinctus@ENSDNOP00000011162
**********************************************************************************************************************************AEESCKCNGWKNPN*****PSPTPPRADLQHIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKXXXXXXXXXXXXXXXXXX...
>Monodelphis domestica@ENSMODP00000032522
***********************************************************************************************GASTA**RIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPN*****PPPTPPRADLQQIIVNLTESCRSCSHALA*AHVSH*LENVAEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Macropus eugenii@ENSMEUP00000013271
**********************************************************************************************************************************AEESCKCNGWKNPN*****PPPTPPRADVQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPIVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000007907
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQTIVNLTESCRSCSHALA*AHVSH*LENESEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Anolis carolinensis@ENSACAP00000000014
**********************************************************************************************************************************************************************************************************************************************************...
Bio-MUST-Apps-OmpaPa
view release on metacpan or search on metacpan
t/ompa_pa.t view on Meta::CPAN
* Bifidobacterium_gallicum_561180@EFA22864 none 232 4.1e-51 1 1 0.911 1.089
* Ktedonobacter_racemifer_485913@EFH90230 none 294 4.3e-51 1 1 0.906 1.380
* Bacillus_nealsonii_1202533@EOR24990 none 219 4.6e-51 1 1 0.934 1.028
* Atopobium_parvulum_521095@ACV51745 none 238 4.7e-51 1 1 0.920 1.117
* Psychrobacter_cryohalolentis_335284@ABE75027 none 331 5.3e-51 1 1 0.930 1.554
* Macrococcus_caseolyticus_458233@BAH17775 none 207 6.5e-51 1 1 0.901 0.972
* Listeria_monocytogenes_1639@CCQ21097 none 217 7.3e-51 1 1 0.897 1.019
* Hyphomonas_neptunium_228405@ABI75362 none 230 8.9e-51 1 1 0.901 1.080
* Bacillus_sp._666686@AGK52556 none 225 1.2e-50 1 1 0.911 1.056
* Scardovia_wiggsiae_857290@EJD64896 none 326 1.3e-50 1 1 0.897 1.531
* Aerococcus_urinae_866775@AEA01410 none 295 1.7e-50 1 1 0.887 1.385
t/ompa_pa.t view on Meta::CPAN
* Bifidobacterium_gallicum_561180@EFA22864 none 232 4.1e-51 1 1 0.911 1.089
* Ktedonobacter_racemifer_485913@EFH90230 none 294 4.3e-51 1 1 0.906 1.380
* Bacillus_nealsonii_1202533@EOR24990 none 219 4.6e-51 1 1 0.934 1.028
* Atopobium_parvulum_521095@ACV51745 none 238 4.7e-51 1 1 0.920 1.117
* Psychrobacter_cryohalolentis_335284@ABE75027 none 331 5.3e-51 1 1 0.930 1.554
* Macrococcus_caseolyticus_458233@BAH17775 none 207 6.5e-51 1 1 0.901 0.972
* Listeria_monocytogenes_1639@CCQ21097 none 217 7.3e-51 1 1 0.897 1.019
* Hyphomonas_neptunium_228405@ABI75362 none 230 8.9e-51 1 1 0.901 1.080
* Bacillus_sp._666686@AGK52556 none 225 1.2e-50 1 1 0.911 1.056
* Scardovia_wiggsiae_857290@EJD64896 none 326 1.3e-50 1 1 0.897 1.531
* Aerococcus_urinae_866775@AEA01410 none 295 1.7e-50 1 1 0.887 1.385
Bio-MUST-Apps-TwoScalp
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test/PTHR22663-ts-s2s.ali view on Meta::CPAN
M*DWFHCNQCFRK***D***GAHFFVTSCGHIFCKKCVTL*********************EKCAVCGTACKHL*ALSDNLKPQEKMFFKSP***VETALQYFSHISQVWSFQKKQTDLLIAFYKHRITKLETAMQET***********QQALVS********************QDKELSVL***RKE****NG**************ELKKFL****AILKESPSR**YQGSRS*ITPRP********...
>RNF212B-Nomascus leucogenys@ENSNLEP00000018230
M*DWFHCNQCFRK***D***GAHFFVTSCGHIFCKKCVTL*********************EKCAVCGTACKHL*ALSDNLKPQEKMFFKSP***VETALQYFSHISQVWNFQKKQTDLLIAFYKHRITKLETAMQEA***********QQALVS********************QDKELSVL***RKE****NG**************ELKKFL****AILKESPSR**YQGSRS*NTPRP********...
>RNF212B-Homo sapiens@ENSP00000450766
M*DWFHCNQCFRK***D***GAHFFVTSCGHIFCKKCVTL*********************EKCAVCGTACKHL*ALSDNLKPQEKMFFKSP***VETALQYFSHISQ**********************************************************************************************************************************************...
>RNF212B-Macropus eugenii@ENSMEUP00000000144
M*DWFHCNQCFRK***D***GAHFFVTSCGHIFCKKCVTK*********************EKCAVCGAACKHL*ALSDNLKPQEKIFFKSP***VETALKYFSHISQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX***********XXXXXX********************XXXELVDL***RKE****NG**************ELKKFL****AILKXXXXX**XXXXXX*XXXXX********...
>RNF212B-Tarsius syrichta@ENSTSYP00000004298
M*DWFHCNQCFRK***D***GTHFFVTSCGHIFCKKCVTL*********************EKCTVCGTACKHL*ALSDNLKPQEKMFFKSP***VEAALQYFSHISQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX***********QQMLTS********************QDKELSVL***RKE****NG**************ELKKFL****AMLKESPSR**YQGSRL*TTPRP********...
>RNF212B-Dasypus novemcinctus@ENSDNOP00000009018
M*DWFHCNQCFRK***D***GAHFFVTSCGHIFCKKCVTL*********************EKCAVCGTACKHL*ALSDNLKPQEKMFFRSP***VETALQYFSHISQVWSFQKKQTDLLIAFYKHKITKLEAVMQEA***********QQTVAS********************QDKELSVL***RKE****NG**************ELKKFL****SILKESPSR**YQGSRS*TTPRP********...
Bio-MUST-Core
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lib/Bio/MUST/Core/GeneticCode/Factory.pm view on Meta::CPAN
-- based on complete mitochondrial genome of honeybee
-- Crozier and Crozier (1993)
--
-- Version 3.2 - 6/24/95
-- Code Comments
-- 10 Alternative Ciliate Macronuclear renamed to Euplotid Macro...
-- 15 Blepharisma Macro.. code added
-- 5 Invertebrate Mito.. GTG allowed as alternate initiator
-- 11 Eubacterial renamed to Bacterial as most alternate starts
-- have been found in Archea
--
--
lib/Bio/MUST/Core/GeneticCode/Factory.pm view on Meta::CPAN
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
} ,
{
name "Blepharisma Macronuclear" ,
id 15 ,
ncbieaa "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
sncbieaa "----------*---*--------------------M----------------------------"
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Bio-MUST-Drivers
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test/taxdump/gc.prt view on Meta::CPAN
-- based on complete mitochondrial genome of honeybee
-- Crozier and Crozier (1993)
--
-- Version 3.2 - 6/24/95
-- Code Comments
-- 10 Alternative Ciliate Macronuclear renamed to Euplotid Macro...
-- 15 Bleharisma Macro.. code added
-- 5 Invertebrate Mito.. GTG allowed as alternate initiator
-- 11 Eubacterial renamed to Bacterial as most alternate starts
-- have been found in Achea
--
--
test/taxdump/gc.prt view on Meta::CPAN
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
} ,
{
name "Blepharisma Macronuclear" ,
id 15 ,
ncbieaa "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
sncbieaa "-----------------------------------M----------------------------"
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Bio-Phylo-Beagle
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beagle_wrap.c view on Meta::CPAN
#define SWIG_MAYBE_PERL_OBJECT SWIG_PERL_OBJECT_DECL
/* SWIG Perl macros */
/* Macro to call an XS function */
#ifdef PERL_OBJECT
# define SWIG_CALLXS(_name) _name(cv,pPerl)
#else
# ifndef MULTIPLICITY
# define SWIG_CALLXS(_name) _name(cv)
beagle_wrap.c view on Meta::CPAN
}
return SWIG_OK;
}
/* Macros for low-level exception handling */
#define SWIG_croak(x) { SWIG_Error(SWIG_RuntimeError, x); SWIG_fail; }
typedef XS(SwigPerlWrapper);
typedef SwigPerlWrapper *SwigPerlWrapperPtr;
Bio-Roary
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t/data/real_data_1.gff view on Meta::CPAN
ERS111111|SC|contig000020 Prodigal:2.60 CDS 53710 54336 . - 0 ID=11111_1#11_04110;gene=csgD;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729863.1,similar to AA sequence:UniProtKB:P52106,protein motif:CLUSTERS:PRK10...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 55092 55547 . + 0 ID=11111_1#11_04111;gene=csgB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729864.1,similar to AA sequence:UniProtKB:P0A1E9,protein motif:CLUSTERS:PRK10...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 55589 56044 . + 0 ID=11111_1#11_04112;gene=csgA;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729865.1,similar to AA sequence:UniProtKB:P0A1E7,protein motif:CLUSTERS:PRK10...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 56106 56432 . + 0 ID=11111_1#11_04113;gene=csgC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_007470940.1,similar to AA sequence:UniProtKB:P0A1Z9,protein motif:CLUSTERS:PRK10...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 56564 56884 . + 0 ID=11111_1#11_04114;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087410.1;locus_tag=11111_1#11_04114;product=Fimbrial protein;protein_id=gnl|SC|11111_1#...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 56972 57511 . + 0 ID=11111_1#11_04115;eC_number=3.5.1.-;gene=ymdB;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_006087411.1,similar to AA sequence:UniProtKB:P0A8D6,protein mo...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 57450 58934 . + 0 ID=11111_1#11_04116;eC_number=2.7.8.-;gene=ybhO_2;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570877.2,similar to AA sequence:UniProtKB:P0AA84,protein ...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 58951 60105 . - 0 ID=11111_1#11_04117;eC_number=2.1.-.-;gene=mdoC;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570876.1,similar to AA sequence:UniProtKB:P75920,protein mo...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 60359 61912 . + 0 ID=11111_1#11_04118;gene=mdoG;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_001570875.1,similar to AA sequence:UniProtKB:P33136,protein motif:CLUSTERS:PRK13...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 61905 64448 . + 0 ID=11111_1#11_04119;eC_number=2.4.1.-;gene=mdoH;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_216085.1,similar to AA sequence:UniProtKB:P62517,protein motif...
ERS111111|SC|contig000020 Prodigal:2.60 CDS 64522 64749 . + 0 ID=11111_1#11_04120;inference=ab initio prediction:Prodigal:2.60,similar to AA sequence:RefSeq:YP_004729872.1,protein motif:CLUSTERS:PRK10175,protein motif:Cdd:COG5645,protein motif:Pfam:P...
Bio-Translator
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lib/Bio/Translator/Table.pm view on Meta::CPAN
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
} ,
{
name "Blepharisma Macronuclear" ,
id 15 ,
ncbieaa "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
sncbieaa "-----------------------------------M----------------------------"
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
lib/Bio/Translator/Table.pm view on Meta::CPAN
-- Base1 ATGTGGTGCAACYAACCCATAGTTGHMS"
-- Base2 TACGAATGATATTTACAGGCCTGAMTTA"
-- Base3 GGNYYRYNYHGNRGHNRNNNNNRHYAHR"
}
{
name "Blepharisma Macronuclear" ,
id 15 ,
ncbieaa "X*ACDEFGHIKLLMNPQQRRSSTVWYBJJZZ",
sncbieaa "M------------------------------",
-- Base1 ATGTGGTGCAACYAACCYCMATAGTTGHMBS"
-- Base2 TRCGAATGATATTTACAAGGGCCTGAMTTAA"
Bio-ViennaNGS
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ENABLE_PREPROCESSING = YES
# If the MACRO_EXPANSION tag is set to YES doxygen will expand all macro names
# in the source code. If set to NO only conditional compilation will be
# performed. Macro expansion can be done in a controlled way by setting
# EXPAND_ONLY_PREDEF to YES.
# The default value is: NO.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
MACRO_EXPANSION = NO
BioPerl-Network
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t/data/sulso_small.xml view on Meta::CPAN
</participantIdentificationMethod>
<attributeList>
<attribute name="author-list">Knochel T., Ivens A., Hester G., Gonzalez A., Bauerle R., Wilmanns M., Kirschner K., Jansonius JN.</attribute>
<attribute name="journal">Proc. Natl. Acad. Sci. U.S.A. (0027-8424)</attribute>
<attribute name="publication-year">1999</attribute>
<attribute name="dataset">MSD - Data obtained from The Macromolecular Structure Database</attribute>
</attributeList>
</experimentDescription>
</experimentList>
<interactorList>
<interactor id="4">
BioPerl
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t/data/biorecipe.nhx view on Meta::CPAN
5.3180217[&&NHX:S=Caenorhabditis_elegans:T=6239],(CAERE:3.6291663[&&NHX:S=Caenorhabditis_remanei:T=31234],CAEBR:4.3000153[&&NHX:S=Caenorhabditis_briggsae:T=6238]):0.41116075[&&NHX:B=98]):0.13776817[&&NHX
:B=72],CAEBE:4.2883189[&&NHX:S=Caenorhabditis_brenneri:T=135651]):1.9913751[&&NHX:B=100]):15.936087[&&NHX:B=100]):16.164887[&&NHX:B=100],((((LOTGI:23.922724[&&NHX:S=Lottia_gigantea:T=225164],(HELRO:26.34
055[&&NHX:S=Helobdella_robusta:T=6412],CAPI1:22.755934[&&NHX:S=Capitella_sp._I:T=73382]):0.85815597[&&NHX:B=89]):2.3825092[&&NHX:B=100],(NEMVE:26.477253[&&NHX:S=Nematostella_vectensis:T=45351],((CIOSA:7.
9216903[&&NHX:S=Ciona_savignyi:T=51511],CIOIN:10.00926[&&NHX:S=Ciona_intestinalis:T=7719]):21.59891[&&NHX:B=100],((((ORYLA:6.090087[&&NHX:S=Oryzias_latipes:T=8090],(GASAC:6.1152276[&&NHX:S=Gasterosteus_a
culeatus:T=69293],(TAKRU:3.0333091[&&NHX:S=Takifugu_rubripes:T=31033],TETNG:3.3887518[&&NHX:S=Tetraodon_nigroviridis:T=99883]):3.199465[&&NHX:B=100]):0.42854645[&&NHX:B=100]):3.037336[&&NHX:B=100],DANRE:
8.0442086[&&NHX:S=Danio_rerio:T=7955]):3.80391[&&NHX:B=100],(XENTR:9.8212561[&&NHX:S=Xenopus_tropicalis:T=8364],((ORNAN:5.6204266[&&NHX:S=Ornithorhynchus_anatinus:T=9258],((MACEU:3.0333255[&&NHX:S=Macrop
us_eugenii:T=9315],MONDO:2.435399[&&NHX:S=Monodelphis_domestica:T=13616]):2.833353[&&NHX:B=100],((RATNO:1.3842393[&&NHX:S=Rattus_norvegicus:T=10116],MOUSE:1.2347199[&&NHX:S=Mus_musculus:T=10090]):2.30283
32[&&NHX:B=100],((((OCHPR:2.9196125[&&NHX:S=Ochotona_princeps:T=9978],RABIT:2.0106071[&&NHX:S=Oryctolagus_cuniculus:T=9986]):0.89841649[&&NHX:B=100],((((SPETR:3.0357335[&&NHX:S=Spermophilus_tridecemlinea
tus:T=43179],((MICMU:1.9748823[&&NHX:S=Microcebus_murinus:T=30608],OTOGA:2.6116392[&&NHX:S=Otolemur_garnettii:T=30611]):0.45473502[&&NHX:B=100],(TARSY:2.4175242[&&NHX:S=Tarsius_syrichta:T=9478],(CALJA:1.
4056291[&&NHX:S=Callithrix_jacchus:T=9483],((PONAB:0.49708744[&&NHX:S=Pongo_pygmaeus_abelii:T=9601],((HUMAN:0.18782408[&&NHX:S=Homo_sapiens:T=9606],PANTR:0.22094877[&&NHX:S=Pan_troglodytes:T=9598]):0.087
77922[&&NHX:B=100],GORGO:0.41787667[&&NHX:S=Gorilla_gorilla:T=9595]):0.15069262[&&NHX:B=100]):0.17405127[&&NHX:B=100],MACMU:0.81068563[&&NHX:S=Macaca_mulatta:T=9544]):0.40572836[&&NHX:B=100]):0.90012338[
Boost-Geometry-Utils
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src/boost/config/auto_link.hpp view on Meta::CPAN
#ifndef BOOST_VERSION_HPP
# include <boost/version.hpp>
#endif
#ifndef BOOST_LIB_NAME
# error "Macro BOOST_LIB_NAME not set (internal error)"
#endif
//
// error check:
//
Boost-Graph
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include/boost/config/auto_link.hpp view on Meta::CPAN
#ifndef BOOST_VERSION_HPP
# include <boost/version.hpp>
#endif
#ifndef BOOST_LIB_NAME
# error "Macro BOOST_LIB_NAME not set (internal error)"
#endif
//
// error check:
//
( run in 1.230 second using v1.01-cache-2.11-cpan-49f99fa48dc )