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Benchmark-Lab
view release on metacpan or search on metacpan
lib/Benchmark/Lab.pm view on Meta::CPAN
=for Pod::Coverage BUILD
=head1 CAVEATS
If the C<do_task> executes in less time than the timer granularity, an
error will be thrown. For benchmarks that do not have before/after functions,
just repeating the function under test in C<do_task> will be sufficient.
=head1 RATIONALE
Benchmark-MCE
view release on metacpan or search on metacpan
lib/Benchmark/MCE.pm view on Meta::CPAN
$Benchmark::MCE::QUIET = 1;
=head1 NOTES
The framework uses a monotonic timer for non-Windows systems with at least v1.9764
of C<Time::HiRes> (C<$Benchmark::MCE::MONO_CLOCK> will be true).
=head1 AUTHOR
Dimitrios Kechagias, C<< <dkechag at cpan.org> >>
Benchmark-Perl-Formance-Cargo
view release on metacpan or search on metacpan
share/P6STD/std_hilite/jquery-1.4.2.min.js view on Meta::CPAN
"json"||!b&&f.indexOf("json")>=0)a=c.parseJSON(a);else if(b==="script"||!b&&f.indexOf("javascript")>=0)c.globalEval(a);return a},param:function(a,b){function d(i,o){if(c.isArray(o))c.each(o,function(k,n){b||/\[\]$/.test(i)?f(i,n):d(i+"["+(typeof n===...
if(c.isArray(a)||a.jquery)c.each(a,function(){f(this.name,this.value)});else for(var j in a)d(j,a[j]);return e.join("&").replace(yb,"+")}});var la={},Ab=/toggle|show|hide/,Bb=/^([+-]=)?([\d+-.]+)(.*)$/,W,va=[["height","marginTop","marginBottom","padd...
this[a].style.display=d||"";if(c.css(this[a],"display")==="none"){d=this[a].nodeName;var f;if(la[d])f=la[d];else{var e=c("<"+d+" />").appendTo("body");f=e.css("display");if(f==="none")f="block";e.remove();la[d]=f}c.data(this[a],"olddisplay",f)}}a=0;f...
"olddisplay",c.css(this[a],"display"))}a=0;for(b=this.length;a<b;a++)this[a].style.display="none";return this}},_toggle:c.fn.toggle,toggle:function(a,b){var d=typeof a==="boolean";if(c.isFunction(a)&&c.isFunction(b))this._toggle.apply(this,arguments)...
animate:function(a,b,d,f){var e=c.speed(b,d,f);if(c.isEmptyObject(a))return this.each(e.complete);return this[e.queue===false?"each":"queue"](function(){var j=c.extend({},e),i,o=this.nodeType===1&&c(this).is(":hidden"),k=this;for(i in a){var n=i.repl...
j.specialEasing||{})[i]=a[i][1];a[i]=a[i][0]}}if(j.overflow!=null)this.style.overflow="hidden";j.curAnim=c.extend({},a);c.each(a,function(r,u){var z=new c.fx(k,j,r);if(Ab.test(u))z[u==="toggle"?o?"show":"hide":u](a);else{var C=Bb.exec(u),B=z.cur(true...
this.each(function(){for(var f=d.length-1;f>=0;f--)if(d[f].elem===this){b&&d[f](true);d.splice(f,1)}});b||this.dequeue();return this}});c.each({slideDown:K("show",1),slideUp:K("hide",1),slideToggle:K("toggle",1),fadeIn:{opacity:"show"},fadeOut:{opaci...
"number"?f.duration:c.fx.speeds[f.duration]||c.fx.speeds._default;f.old=f.complete;f.complete=function(){f.queue!==false&&c(this).dequeue();c.isFunction(f.old)&&f.old.call(this)};return f},easing:{linear:function(a,b,d,f){return d+f*a},swing:function...
c.fx.step._default)(this);if((this.prop==="height"||this.prop==="width")&&this.elem.style)this.elem.style.display="block"},cur:function(a){if(this.elem[this.prop]!=null&&(!this.elem.style||this.elem.style[this.prop]==null))return this.elem[this.prop]...
this.pos=this.state=0;var e=this;f.elem=this.elem;if(f()&&c.timers.push(f)&&!W)W=setInterval(c.fx.tick,13)},show:function(){this.options.orig[this.prop]=c.style(this.elem,this.prop);this.options.show=true;this.custom(this.prop==="width"||this.prop===...
this.end;this.pos=this.state=1;this.update();this.options.curAnim[this.prop]=true;for(var f in this.options.curAnim)if(this.options.curAnim[f]!==true)d=false;if(d){if(this.options.display!=null){this.elem.style.overflow=this.options.overflow;a=c.data...
e,this.options.orig[e]);this.options.complete.call(this.elem)}return false}else{e=b-this.startTime;this.state=e/this.options.duration;a=this.options.easing||(c.easing.swing?"swing":"linear");this.pos=c.easing[this.options.specialEasing&&this.options....
c.fx.stop()},stop:function(){clearInterval(W);W=null},speeds:{slow:600,fast:200,_default:400},step:{opacity:function(a){c.style(a.elem,"opacity",a.now)},_default:function(a){if(a.elem.style&&a.elem.style[a.prop]!=null)a.elem.style[a.prop]=(a.prop==="...
function(a){var b=this[0];if(a)return this.each(function(e){c.offset.setOffset(this,a,e)});if(!b||!b.ownerDocument)return null;if(b===b.ownerDocument.body)return c.offset.bodyOffset(b);var d=b.getBoundingClientRect(),f=b.ownerDocument;b=f.body;f=f.do...
this[0];if(a)return this.each(function(r){c.offset.setOffset(this,a,r)});if(!b||!b.ownerDocument)return null;if(b===b.ownerDocument.body)return c.offset.bodyOffset(b);c.offset.initialize();var d=b.offsetParent,f=b,e=b.ownerDocument,j,i=e.documentElem...
k-=b.scrollTop;n-=b.scrollLeft;if(b===d){k+=b.offsetTop;n+=b.offsetLeft;if(c.offset.doesNotAddBorder&&!(c.offset.doesAddBorderForTableAndCells&&/^t(able|d|h)$/i.test(b.nodeName))){k+=parseFloat(j.borderTopWidth)||0;n+=parseFloat(j.borderLeftWidth)||0...
f.position==="fixed"){k+=Math.max(i.scrollTop,o.scrollTop);n+=Math.max(i.scrollLeft,o.scrollLeft)}return{top:k,left:n}};c.offset={initialize:function(){var a=s.body,b=s.createElement("div"),d,f,e,j=parseFloat(c.curCSS(a,"marginTop",true))||0;c.extend...
a.insertBefore(b,a.firstChild);d=b.firstChild;f=d.firstChild;e=d.nextSibling.firstChild.firstChild;this.doesNotAddBorder=f.offsetTop!==5;this.doesAddBorderForTableAndCells=e.offsetTop===5;f.style.position="fixed";f.style.top="20px";this.supportsFixed...
Benchmark-ProgressBar
view release on metacpan or search on metacpan
lib/Benchmark/ProgressBar.pm view on Meta::CPAN
print STDERR "runloop $n '$subcode'\n" if $Benchmark::Debug;
# Give one more line so that the progress bar is easier on the eye
#print "\n";
# Wait for the user timer to tick. This makes the error range more like
# -0.01, +0. If we don't wait, then it's more like -0.01, +0.01. This
# may not seem important, but it significantly reduces the chances of
# getting a too low initial $n in the initial, 'find the minimum' loop
# in &countit. This, in turn, can reduce the number of calls to
# &runloop a lot, and thus reduce additive errors.
Benchmark-Timer-Class
view release on metacpan or search on metacpan
return if $routine eq 'DESTROY';
# Create a new Timer object if we dont already have one
if (!exists $self->{stats}) {
$self->{stats} = new Benchmark::Timer();
}
# Start the timer, call the routine, then stop the timer.
# Finally return the results to the user.
my ($result,@results);
if (wantarray) {
# User called a routine that required an array/hash return value
$self->{stats}->start($routine);
Benchmark-Timer
view release on metacpan or search on metacpan
lib/Benchmark/Timer.pm view on Meta::CPAN
return if $self->[SKIPCOUNT]->{$tag} > 0;
my $i = exists $self->[ELAPSED]->{$tag} ?
scalar @{$self->[ELAPSED]->{$tag}} : 0;
my $before = $self->[BEFORE]->{$tag}->[$i];
croak 'timer out of sync' unless defined $before;
# Create a stats object if we need to
if (defined $self->[CONFIDENCE] && !defined $self->[STAT]->{$tag})
{
$self->[STAT]->{$tag} = Statistics::PointEstimation->new;
lib/Benchmark/Timer.pm view on Meta::CPAN
=over 4
=item $t = Benchmark::Timer->new( [options] );
Constructor for the Benchmark::Timer object; returns a reference to a
timer object. Takes the following named arguments:
=over 4
=item skip
lib/Benchmark/Timer.pm view on Meta::CPAN
=back
=item $t->reset;
Reset the timer object to the pristine state it started in.
Erase all memory of tags and any previously accumulated timings.
Returns a reference to the timer object. It takes the same arguments
the constructor takes.
=item $t->start($tag);
Record the current time so that when C<stop()> is called, we can calculate an
lib/Benchmark/Timer.pm view on Meta::CPAN
=item $t->stop($tag);
Record timing information. If $tag is supplied, it must correspond to one
given to a previously called C<start()> call. It returns the elapsed time in
milliseconds. C<stop()> croaks if the timer gets out of sync (e.g. the number
of C<start()>s does not match the number of C<stop()>s.)
=item $t->need_more_samples($tag);
Compute the estimated error in the average of the data collected thus far, and
Bigtop
view release on metacpan or search on metacpan
lib/Bigtop/Backend/HttpdConf/Gantry.pm view on Meta::CPAN
my $gantry_config = $tree->get_config->{Conf};
$instance = $gantry_config->{instance};
$conffile = $gantry_config->{conffile};
}
# let old timers go as before
$instance ||= $config->{instance } || 0;
$conffile ||= $config->{conffile } || 0;
if ( $instance and defined $config_type and $config_type ne 'base' ) {
$instance .= "_$config_type";
Bio-DB-GFF
view release on metacpan or search on metacpan
bin/bp_bulk_load_gff view on Meta::CPAN
}
package main;
$main::VERSION = '1.7.4';
eval "use Time::HiRes"; undef $@;
my $timer = defined &Time::HiRes::time;
my $bWINDOWS = 0; # Boolean: is this a MSWindows operating system?
if ($^O =~ /MSWin32/i) {
$bWINDOWS = 1;
}
bin/bp_bulk_load_gff view on Meta::CPAN
my $gff3;
my $current_file; #used to reset GFF3 flag in mix of GFF and GFF3 files
$db->preferred_groups(split (/[,\s]+/,$GROUP_TAG)) if defined $GROUP_TAG;
my $last = Time::HiRes::time() if $timer;
my $start = $last;
# avoid hanging on standalone --fasta load
if (!@ARGV) {
$FH{NULL} = IO::File->new(">$tmpdir/null");
bin/bp_bulk_load_gff view on Meta::CPAN
$FH{ FATTRIBUTE() }->print( join("\t",$attributeid,$key),"\n" ) unless $DONE{"A$attributeid"}++;
$FH{ FATTRIBUTE_TO_FEATURE() }->print( join("\t",$fid,$attributeid,$value),"\n");
}
if ( $fid % 1000 == 0) {
my $now = Time::HiRes::time() if $timer;
my $elapsed = $timer ? sprintf(" in %5.2fs",$now - $last) : '';
$last = $now;
print STDERR "$fid features parsed$elapsed...";
print STDERR -t STDOUT && !$ENV{EMACS} ? "\r" : "\n";
}
}
bin/bp_bulk_load_gff view on Meta::CPAN
$FH{FATTRIBUTE_TO_FEATURE()}->print("\\.\n\n");
}
$_->close foreach values %FH;
printf STDERR "Total parse time %5.2fs\n",(Time::HiRes::time() - $start) if $timer;
warn "Loading feature data and analyzing tables. You may see RDBMS messages here...\n";
if ($use_pg){
warn "Loading feature data. You may see Postgres comments...\n";
bin/bp_bulk_load_gff view on Meta::CPAN
my $command = MYSQL . qq[$AUTH -s -e "$sql"];
$command =~ s/\n/ /g;
$success &&= system($command) == 0;
unlink "$tmpdir/$f.$$";
}
printf STDERR "Total load time %5.2fs\n",(time() - $start) if $timer;
print STDERR "done...\n";
print STDERR "Analyzing/optimizing tables. You will see database messages...\n";
$start = time();
my $sql = '';
Bio-Emboss
view release on metacpan or search on metacpan
Emboss_time.xs view on Meta::CPAN
OUTPUT:
RETVAL
thys
AjBool
ajTimeSetLocal (thys, timer)
AjPTime thys
const time_t timer
OUTPUT:
RETVAL
thys
Bio-Grid-Run-SGE
view release on metacpan or search on metacpan
lib/Bio/Grid/Run/SGE/Log/Notify/Jabber.pm view on Meta::CPAN
$j->broadcast;
},
);
$con->connect;
my $timer
= AnyEvent->timer( after => $self->wait_time, cb => sub { $self->log->info("close"); $j->broadcast; } );
$j->wait;
$con->disconnect;
return $msg_send_failed;
}
Bio-MUST-Apps-FortyTwo
view release on metacpan or search on metacpan
lib/Bio/MUST/Apps/FortyTwo/Manual.pod view on Meta::CPAN
# 22498 >Danio_rerio
# 21071 >Homo_sapiens
# 20722 >Mus_musculus
# 18933 >Monodelphis_domestica
# 18616 >Loxodonta_africana
# 17762 >Latimeria_chalumnae
# 17678 >Canis_familiaris
# 17114 >Xenopus_tropicalis
# 16665 >Anolis_carolinensis
# 16611 >Sarcophilus_harrisii
#
lib/Bio/MUST/Apps/FortyTwo/Manual.pod view on Meta::CPAN
22498 Danio_rerio
21071 Homo_sapiens
20722 Mus_musculus
18933 Monodelphis_domestica
18616 Loxodonta_africana
17762 Latimeria_chalumnae
17678 Canis_familiaris
17114 Xenopus_tropicalis
16665 Anolis_carolinensis
16611 Sarcophilus_harrisii
Bio-MUST-Apps-HmmCleaner
view release on metacpan or search on metacpan
test/GNTPAN12210.ali view on Meta::CPAN
LSM********RSGIHAPTPPRRVLGIMAEPEVSLQTSARTPQAAASSAATASSVTAPPA*******SSGGGSGGSSST*******SSSDPVRPGLSQQQ**RASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPN*****P*PTAPRMDLQQTVTNLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Protopterus annectens@comp246593_c0_seq1
**********************************************************************************************************************************************************************************************************************************************************...
>Protopterus annectens@comp301579_c0_seq1
******************************************MADSGQASQPRLLQSQPSGIVPSSGSTTGSSTTSGTG******SGSSDPARPGLSQQQ**RASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPN*****P*ATAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSDDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Latimeria chalumnae@ENSLACP00000012334
************RPLQNRSNFIEPADSKQSSLLPGSLSAVAMAEPVQQASQPR*****AGGSSLNNGPNPGPSGGAGS*******SGGSDPARPGLSQQQ**RASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PTAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKSILQMSRPVVEGSL...
>Danio rerio@ENSDARP00000011795
MAD****************************************PAAQSSAQPRLQQAQSSGPTGSNSNPGA***************GSSDPARPGLSQQQ**WSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPN*****P*PTAARMELQQQAASLTETCRSCGHSLA*EHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Oreochromis niloticus@ENSONIP00000001395
MSD*****************************************PAAQALQPRLLQAQSAGSASSSTTTTAGSGS***********GNSDPVRPGLSQQQ**RASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PSATRIDLQQQAASLSEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
test/GNTPAN12210.ali view on Meta::CPAN
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Taeniopygia guttata@ENSTGUP00000003370
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRAELQQAAASLAEPCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Xenopus tropicalis@ENSXETP00000030583
*************************MVCVAGSG************************SSALPQGSPAIVASAASGAARG******AESPSAAGGGGVGSAPLRIAAKKGQLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPN*****PPPTPPKMDLQQTVVSLAEPCRSCGHTLA*AHVSH*LENVSEEEMNRLLGIVLDIEYLFTCV***HKEEDADTKQVY*FCLFKLLRKCILQMVKPAVEGSL...
>Latimeria chalumnae@ENSLACP00000007242
*************************MSE*****************************GGGVQQGSPAP***********GSAGSVPAGGADGSGSAAGSA**RIAMKKAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPN*****PPPTPPRVDLQQTVGSLTEPCRSCSHTLA*DHVSH*LENVLEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPAVEGSL...
>Danio rerio@ENSDARP00000085190
*************************MSE*****************************STGIPQGSPAVGAAGSAPAAPG*******VGGTECSGAAVGSA**RIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAE*QPTAVSLMEPCRSCSHALG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCV***HKEEDPDTKQVY*FSLFKLLRKCILQMGRPVVE*AL...
>Oreochromis niloticus@ENSONIP00000003026
*************************MAD*****************************SAGIQQGSPAIGAAGLVPAAPG*******AGGTEGSGAARGSA**RIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQN*****PPPTPPQTEQQSNAVNLQEPCRSCSHTLG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCI***HKEEDADTKQVY*FSLFKLLRKSILQMGKPMLEAQ*...
Bio-MUST-Apps-TwoScalp
view release on metacpan or search on metacpan
test/PTHR22663-ts-s2s.ali view on Meta::CPAN
M*DWFHCNQCFQK***D***GTHFFVTSCGHIFCKKCVTK*********************EKCAVCGAACKHL*ALSDNLKPQEKMFFKSP***VETALKYFSHISQVWSFQKKQTDLLITFYKHRLSKSEAAMQEA***********QRTVAS********************QDKELVVL***RKE****NG**************ELKKFL****AILKESPSR**CQVNRS*TIPRP********...
>RNF212B-Cavia porcellus@ENSCPOP00000020757
M*DWFHCNQCFQK***D***GTHFFVTSCGHIFCKKCVTM*********************EKCTICGTPCKHL*ALSDNLKPQEKMFFKSP***VETALQYFSHISQVWSFQKKQTNLLIAFYKHRIIKLEAAIEEA***********QQTVAN********************RDKELSIL***RKE****NG**************ELKKLI****AFLKESPSR**YQGSRL*TTPRP********...
>RNF212B-Ornithorhynchus anatinus@ENSOANP00000012178
M*DWFHCNQCFCK***D***AAPFFVTNCGHIFCRKCVLE*********************EKCAICGTACKHL*VLSENLKPQVKMFFKSP***KETALRYLSHVSQVWTFQKKQMDLLIAFYKDRLSKLELTVQET***********QQRVAN********************QEKELAVL***KKE****NG**************ELKKFL****SILKECPNR**CQGSRT*STPRP********...
>RNF212B-Latimeria chalumnae@ENSLACP00000004822
M*DWFHCNKCFRQ***D***GASFCVTNCGHIICEKCSEK*********************EKCSVCGTACRNL*ILSNDMTPQVKMYFTSL***TETTQRYLAHVAQVWSFQKKQLDRLVSFYKHKVSKMEAIVHEA***********RQKLIL********************QEKEFAVL***KKE****NA**************ELKKLL****SILKASPSQSVILSFRT*STPRQ********...
>RNF212B-Oryzias latipes@ENSORLP00000015301
M*DWFHCNQCFTR***T***GSKFAVSSCGHILCQACIKP*********************NQCPVCGASCSYM*AISDDMQPQGKVFFKDP***LNLIQSKLANITQIASFQRAQMERVTAHFKKKASTMERHLKEV***********TEQAYR********************H***LSEL***KKE****ND**************NFKKQL****SELSGENSE**L ...
>RNF212B-Astyanax mexicanus@ENSAMXP00000021671
M*DWFHCNNCFLR***K***GKKFAVTSCGHILCESCIHP*********************SRCTVCQATCNYL*PISDKMKPQEKTFFMDP***VNLIQTRLEHIAQIALFQKKQKERVIAFHKQKCAELERRLKEI***********REQCYR********************Q***VSEL***KKE****NT**************ELKKPL****SQWR ...
test/PTHR22663-ts-s2s.ali view on Meta::CPAN
MANWVFCNRCFQP***PHR*TSCFSLTNCGHVYCDACLGKGKK******************NECLICKAPCRTV*LLSKHTDADIQAFFMSI***DSLCKKYSRETSQYLRL ...
>RNF212-Ornithorhynchus anatinus@ENSOANP00000028522.H1.1#NEW#
MAGLAFCNRCFQP***PRG*PSKFSLTSCGHVYCDACLQKGKK******************DQCIICNAPCRTI*LLTNQVDFNIQAFFMDI***N**LKKYSKETSLISEFQDKQRGHLLAFYK*KTSKLEDSLKTV***********TRQMQQ********************LESCRGNS***RAA****PT**************GIANGY****SA***R*************************...
>RNF212-Danio rerio@ENSDARP00000107528.H1.1#NEW#
MSHWICCNACFTS***SGP*ERQMAVTSCGHIICNVCFQRGKQ******************NLCLICKAKCQIS*PLSDKSCSDV***FSDI***SSVAVKYFSEISKVLQFQGKHQKRLLAHYQQTIERMKEEGLKM***********QQEMQK********************MSKKI ...
>RNF212-Latimeria chalumnae@ENSLACP00000017599.H1.1#NEW#
MASWVYCNTCFQQ***PRTDNNSLYLTNCGHVFCQSCLQKGRK******************NECLVCGVHCRTV*LLSNQVSPDIQVLFTDL***DVMCKRYSKEIKQISEFQEKHRKQSLKFYKEKSAKVEEILQKM***********THKMQNLQRELEEKKNYIAKLENSLQKISARPLQ***QTTRLLVDD**************TGRELA****SSLFAQHM***********************...
>Ciona savignyi@ENSCSAVP00000007376.H1.1#NEW#
DWLHCNACYIRIIHK***PESFSVTNCAHIFCNKCVAKAAG******************SMCVVCNRKCSFT*LLHVKMPANTAIYFKEPKELVTKAMEMLKLSEDVRKFQSLQRKSLMKALTSKNEQKEKLLQAA***********VATMTK********************TKKE**************NS**************DLKKFI ...
>Ciona intestinalis@ENSCINP00000006916.H1.1#NEW#
DWLHCNACFVRIIHG***PVSFSVTNCAHIFCNKCIERVAN******************STCTVCNKKCSAYTLLHNKMDPTTANYFKDP***GELAQKAMNMFKLSEDVRKFQATQRKSLFK*******AIVNKA***********EQKEKL********************LQTAVATMSETKRK****NS**************ELKFIIKNKNNLSSVSPKSHSYMAMQY*S*PDC********...
Bio-MUST-Core
view release on metacpan or search on metacpan
bin/classify-ali.pl view on Meta::CPAN
categories:
- label: strict
description: strict species sampling
criteria:
- tax_filter: [ +Latimeria ]
min_seq_count: 1
max_seq_count:
min_org_count:
max_org_count:
min_copy_mean:
bin/classify-ali.pl view on Meta::CPAN
- tax_filter: [ +Anolis, +Gallus, +Meleagris, +Taeniopygia ]
- tax_filter: [ +Mammalia ]
- label: loose
description: loose species sampling
criteria:
- tax_filter: [ +Latimeria ]
- tax_filter: [ +Protopterus ]
- tax_filter: [ +Danio, +Oreochromis ]
- tax_filter: [ +Amphibia, +Amniota ]
=for Euclid: file.type: readable
Bio-MUST-Tools-Mcl
view release on metacpan or search on metacpan
bin/classify-mcl-out.pl view on Meta::CPAN
categories:
- label: strict
description: strict species sampling
criteria:
- tax_filter: [ +Latimeria ]
min_seq_count: 1
max_seq_count:
min_org_count:
max_org_count:
min_copy_mean:
bin/classify-mcl-out.pl view on Meta::CPAN
- tax_filter: [ +Anolis, +Gallus, +Meleagris, +Taeniopygia ]
- tax_filter: [ +Mammalia ]
- label: loose
description: loose species sampling
criteria:
- tax_filter: [ +Latimeria ]
- tax_filter: [ +Protopterus ]
- tax_filter: [ +Danio, +Oreochromis ]
- tax_filter: [ +Amphibia, +Amniota ]
=for Euclid: file.type: readable
Bio-Roary
view release on metacpan or search on metacpan
contrib/roary_plots/roary_files/MathJax.js view on Meta::CPAN
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
if(document.getElementById&&document.childNodes&&document.createElement){if(!(window.MathJax&&MathJax.Hub)){if(window.MathJax){window.MathJax={AuthorConfig:window.MathJax}}else{window.MathJax={}}MathJax.isPacked=true;MathJax.version="2.5";MathJax.fil...
BioPerl-DB
view release on metacpan or search on metacpan
scripts/biosql/load_seqdatabase.pl view on Meta::CPAN
if(@pipemods) {
$pipemods[0]->source_stream($seqin);
$seqin = $pipemods[-1];
}
# reset entry counter and timer
$n_entries = 0;
$time = time();
# loop over the stream
while( my $seq = $seqin->$nextobj ) {
BioPerl-Network
view release on metacpan or search on metacpan
t/lib/Test/Harness.pm view on Meta::CPAN
run all tests with all warnings enabled.
=item C<HARNESS_TIMER>
Setting this to true will make the harness display the number of
milliseconds each test took. You can also use F<prove>'s C<--timer>
switch.
=item C<HARNESS_VERBOSE>
If true, Test::Harness will output the verbose results of running
BioPerl
view release on metacpan or search on metacpan
Bio/DB/GenericWebAgent.pm view on Meta::CPAN
Function: return number of seconds to delay between calls to remote db
Returns : number of seconds to delay
Args : none
NOTE: The default delay policy is 3s. Override in subclasses to
implement delays. The timer has only second resolution, so the delay
will actually be +/- 1s.
=cut
sub delay_policy {
Bluesky
view release on metacpan or search on metacpan
lib/Bluesky.pm view on Meta::CPAN
$on_success->($self);
$c->render( text => '<h1>Success!</h1><p>You can close this window and return to the terminal.</p>' );
# Stop loop after response
require Mojo::IOLoop;
Mojo::IOLoop->timer( 1 => sub { exit 0 } );
}
catch ($e) {
$c->render( text => 'OAuth Callback failed: ' . $e, status => 500 );
die $e;
}
BoardStreams
view release on metacpan or search on metacpan
lib/BoardStreams/Client/Manager.pm view on Meta::CPAN
# ping
$config_o->pipe(
op_map(sub ($config, @) { $config->{pingInterval} - rand() }),
op_switch_map(sub ($iv, @) {
rx_timer($iv * rand(), $iv)->pipe(
op_take_until($self->connected_o->pipe(op_filter(sub { ! $_ }))),
),
}),
)->subscribe(sub { $self->send({ type => 'ping' }) });
Boost-Geometry-Utils
view release on metacpan or search on metacpan
src/boost/mpi/python/skeleton_and_content.hpp
src/boost/mpi/request.hpp
src/boost/mpi/skeleton_and_content.hpp
src/boost/mpi/skeleton_and_content_fwd.hpp
src/boost/mpi/status.hpp
src/boost/mpi/timer.hpp
src/boost/mpl/advance.hpp
src/boost/mpl/advance_fwd.hpp
src/boost/mpl/always.hpp
src/boost/mpl/and.hpp
src/boost/mpl/apply.hpp
src/boost/test/utils/runtime/validation.hpp
src/boost/test/utils/trivial_singleton.hpp
src/boost/test/utils/wrap_stringstream.hpp
src/boost/test/utils/xml_printer.hpp
src/boost/throw_exception.hpp
src/boost/timer.hpp
src/boost/token_functions.hpp
src/boost/token_iterator.hpp
src/boost/tokenizer.hpp
src/boost/tr1/detail/config.hpp
src/boost/tr1/detail/config_all.hpp
Boost-Graph
view release on metacpan or search on metacpan
include/boost/thread/recursive_mutex.hpp
include/boost/thread/thread.hpp
include/boost/thread/tss.hpp
include/boost/thread/xtime.hpp
include/boost/throw_exception.hpp
include/boost/timer.hpp
include/boost/token_functions.hpp
include/boost/token_iterator.hpp
include/boost/tokenizer.hpp
include/boost/tuple/detail/tuple_basic.hpp
include/boost/tuple/detail/tuple_basic_no_partial_spec.hpp
Bot-Backbone-Service-SlackChat
view release on metacpan or search on metacpan
t/lib/TestBot/SingleSendJoin.pm view on Meta::CPAN
# We need to wait until Bot::Backbone has had a chance to instantiate the
# service before we can work with it.
$joined->cb(sub {
$self->_t(
AnyEvent->timer(after => 1, cb => sub {
$self->ready->recv;
#warn "# SENDING\n";
$self->get_service('test_group')->send_message({
text => "!hello " . $self->say_code,
Bot-Backbone
view release on metacpan or search on metacpan
lib/Bot/Backbone/Bot.pm view on Meta::CPAN
=head1 CAVEATS
This thing sort of kind of needs L<POE> to be any kind of useful. However, L<POE> seems to have weird drawbacks. I have some planned work-arounds for this being an explicit and required dependency, but it's there for now.
Second, if you use the Jabber chat service, you need L<AnyEvent>. Mostly, L<AnyEvent> and L<POE> seem to get along, but it's slow and I've found that timers, in particular, just plain don't work quite right.
=head1 AUTHOR
Andrew Sterling Hanenkamp <hanenkamp@cpan.org>
Bot-BasicBot-Pluggable-Module-Notes
view release on metacpan or search on metacpan
root/js/jquery-1.3.2.min.js view on Meta::CPAN
* Sizzle CSS Selector Engine - v0.9.3
* Copyright 2009, The Dojo Foundation
* Released under the MIT, BSD, and GPL Licenses.
* More information: http://sizzlejs.com/
*/
(function(){var R=/((?:\((?:\([^()]+\)|[^()]+)+\)|\[(?:\[[^[\]]*\]|['"][^'"]*['"]|[^[\]'"]+)+\]|\\.|[^ >+~,(\[\\]+)+|[>+~])(\s*,\s*)?/g,L=0,H=Object.prototype.toString;var F=function(Y,U,ab,ac){ab=ab||[];U=U||document;if(U.nodeType!==1&&U.nodeType!==...
Bot-ChatBots-Telegram
view release on metacpan or search on metacpan
eg/tutorial-longpoll-02 view on Meta::CPAN
}
elsif (my ( $delay, $msg) = $text =~ m{
\A /remind \s+ ([1-9]\d*) \s+ (.*)
}mxs)
{
Mojo::IOLoop->timer($delay => sub {
$bcb->sender->send_message(
{
text => "$peer_name: remember $msg",
chat_id => $chat_id,
}
Bot-ChatBots
view release on metacpan or search on metacpan
lib/Bot/ChatBots/Role/Poller.pm view on Meta::CPAN
}
sub schedule {
my ($self, $interval, @rest) = @_;
my $poller = $self->poller(@rest);
Mojo::IOLoop->timer(0 => $poller);
Mojo::IOLoop->recurring($interval, $poller);
return $self;
}
1;
( run in 0.742 second using v1.01-cache-2.11-cpan-817d5f8af8b )