Result:
found more than 992 distributions - search limited to the first 2001 files matching your query ( run in 2.380 )


Bio-MAGETAB

 view release on metacpan or  search on metacpan

inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Bio-MedChunker

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Bio-Medpost

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Bio-Phylo

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lib/Bio/Phylo/Models/Substitution/Dna.pm  view on Meta::CPAN

 Function: Determine DNA substitution model from alignment.
 Returns : An object which is subclass of Bio::Phylo::Models::Substitution::Dna.
 Args    : -matrix: A Bio::Phylo::Matrices::Matrix object
           Optional:
           -tree: A Bio::Phylo::Forest::Tree object
           -timeout: Timeout in seconds to prevent getting stuck in an R process.
 Comments: Prerequisites: Statistics::R, R, and the R package phangorn.

=cut

sub modeltest {

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Bio-Roary

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contrib/roary_plots/roary_files/MathJax.js  view on Meta::CPAN

 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 */

if(document.getElementById&&document.childNodes&&document.createElement){if(!(window.MathJax&&MathJax.Hub)){if(window.MathJax){window.MathJax={AuthorConfig:window.MathJax}}else{window.MathJax={}}MathJax.isPacked=true;MathJax.version="2.5";MathJax.fil...

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Bio-Tools-Run-RemoteBlast

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t/release-RemoteBlast.t  view on Meta::CPAN

    }
    elsif ($attempt > $max_attempts) {
        # have a test fail here (there should not be repeated failed attempts to
        # get reports)
        ok(0,'Exceeded maximum attempts on server to retrieve report');
        diag("Timeout, did not return report after ".($attempt - 1)." attempts");
        skip('Remote server timeout problems', 2);
    }
    else {
        # have a test fail here (whatever is returned should be eval as true and
        # be a SearchIO)

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Bio-fastAPD

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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BioPerl-Run

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t/Tools/Run/RemoteBlast.t  view on Meta::CPAN

    }
    elsif ($attempt > $max_attempts) {
        # have a test fail here (there should not be repeated failed attempts to
        # get reports)
        ok(0,'Exceeded maximum attempts on server to retrieve report');
        diag("Timeout, did not return report after ".($attempt - 1)." attempts");
        skip('Remote server timeout problems', 2);
    }
    else {
        # have a test fail here (whatever is returned should be eval as true and
        # be a SearchIO)

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BioPerl

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Bio/Root/HTTPget.pm  view on Meta::CPAN

  my ($host,$port,$timeout) = @_;
  my $sock = IO::Socket::INET->new(Proto     => 'tcp',
                                   Type      => SOCK_STREAM,
				   PeerHost  => $host,
				   PeerPort  => $port,
				   Timeout   => $timeout,
				  );
  $sock;
}


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Bison

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Bitmask-Data

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

 view all matches for this distribution


Blikistan

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Bloomd-Client

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lib/Bloomd/Client.pm  view on Meta::CPAN

    my ($self) = @_;
    my $socket = IO::Socket::INET->new(
        Proto => $self->protocol,
        PeerHost => $self->host,
        PeerPort => $self->port,
        Timeout  => $self->timeout,
    ) or die "Can't connect to server: $!";

    $self->timeout
      or return $socket;

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Blosxom-Debug

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Blosxom-Include

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Blosxom-Plugin

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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BmltClient-ApiClient

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lib/BmltClient/ApiClient.pm  view on Meta::CPAN

# @param integer $seconds Number of seconds before timing out [set to 0 for no timeout]
#
sub set_timeout {
    my ($self, $seconds) = @_;
    if (!looks_like_number($seconds)) {
        croak('Timeout variable must be numeric.');
    }
    $self->{http_timeout} = $seconds;
}

# make the HTTP request

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BokkaKumiai

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Bot-Applebot

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Bot-BasicBot-Pluggable-Module-Collection

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

 view all matches for this distribution


Bot-BasicBot-Pluggable-Module-Gitbot

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Bot-BasicBot-Pluggable-Module-Notes

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root/js/jquery-1.3.2.min.js  view on Meta::CPAN

 * Sizzle CSS Selector Engine - v0.9.3
 *  Copyright 2009, The Dojo Foundation
 *  Released under the MIT, BSD, and GPL Licenses.
 *  More information: http://sizzlejs.com/
 */
(function(){var R=/((?:\((?:\([^()]+\)|[^()]+)+\)|\[(?:\[[^[\]]*\]|['"][^'"]*['"]|[^[\]'"]+)+\]|\\.|[^ >+~,(\[\\]+)+|[>+~])(\s*,\s*)?/g,L=0,H=Object.prototype.toString;var F=function(Y,U,ab,ac){ab=ab||[];U=U||document;if(U.nodeType!==1&&U.nodeType!==...

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Bot-BasicBot-Pluggable-Module-Notify

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lib/Bot/BasicBot/Pluggable/Module/Notify.pm  view on Meta::CPAN

}

sub _sendmail {
    my ($self,%hash) = @_;

    MIME::Lite->send('smtp', $settings{smtp}, Timeout=>60);

    my $mail = MIME::Lite->new(
        'Reply-To'  => $settings{replyto},
        'From'      => $settings{from},

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Bot-BasicBot-Pluggable-WithConfig

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

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Bot-BasicBot

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t/connect.t  view on Meta::CPAN

use lib qw(lib t/lib);

require IO::Socket;
my $s = IO::Socket::INET->new(
  PeerAddr => "irc.perl.org:80",
  Timeout  => 10,
);

if ($s) {
  close($s);
  plan tests => 4;

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Bot-Cobalt

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lib/Bot/Cobalt/DB.pm  view on Meta::CPAN

has timeout => (
  is        => 'rw',
  isa       => Num,
  builder   => sub { 5 },
);
{ no warnings 'once'; *Timeout = *timeout; }

has serializer => (
  lazy      => 1,
  is        => 'rw',
  isa       => Object,

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Bot-Webalert

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Webalert.pm  view on Meta::CPAN

  DEBUG "Spawning POE::Component::Client::HTTP aliased '$self->{ua_alias}'";

      # Spawn the UA with a cookie jar
  POE::Component::Client::HTTP->spawn(
    Alias     => $self->{ua_alias},
    Timeout   => $self->{ua_timeout},
    CookieJar => HTTP::Cookies->new(),
  );

  POE::Session->create(
    object_states => [

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Bot-WootOff

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WootOff.pm  view on Meta::CPAN

  );

  POE::Component::Client::HTTP->spawn(
    Agent     => $self->{http_agent},
    Alias     => $self->{http_alias},
    Timeout   => $self->{http_timeout},
  );

  my $request = GET( $self->{http_url} );

  our $last_item = "";

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Box-Limited

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inc/Module/Install/Fetch.pm  view on Meta::CPAN

    if (eval { require LWP::Simple; 1 }) {
        LWP::Simple::mirror($args{url}, $file);
    }
    elsif (eval { require Net::FTP; 1 }) { eval {
        # use Net::FTP to get past firewall
        my $ftp = Net::FTP->new($host, Passive => 1, Timeout => 600);
        $ftp->login("anonymous", 'anonymous@example.com');
        $ftp->cwd($path);
        $ftp->binary;
        $ftp->get($file) or (warn("$!\n"), return);
        $ftp->quit;

 view all matches for this distribution


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