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Fix documentation for inc_dirs and lib_dirs.
Build with Dist::Zilla
0.24 Fri Jan 14, 2011
Remove DynaLoader check for Judy1Test. Needed? It was
accidentally committed before.
0.23 Fri Jan 14, 2011
Load libJudy.so.1 for OpenSolaris
0.12 Sun Jun 6 11:01:44 2010 -0700
Install Judy.h to arch directory
0.11 Sat Jun 5 16:23:02 2010 -0700
lib_dirs and inc_dirs pass an empty string to File::Spec->catdir to avoid accidentally turning into /
Allow *optional* html,man3 docs
Remove --prefix setting code
Specify many more ./configure directories explicity
0.10 Wed May 12 14:58:07 2010 -0700
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incidental, or consequential damages of any character arising as a
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pc:*:*:*)
# Left here for compatibility:
# uname -m prints for DJGPP always 'pc', but it prints nothing about
# the processor, so we play safe by assuming i586.
# Note: whatever this is, it MUST be the same as what config.sub
# prints for the "djgpp" host, or else GDB configury will decide that
# this is a cross-build.
echo i586-pc-msdosdjgpp
exit ;;
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inc/run/before_build.pl view on Meta::CPAN
use strict;
use warnings;
use File::Path qw( rmtree );
# if the [GatherDir] plugin accidentally
# gathers the msys32 / msys64 folders
chdir('share') || die;
my $dh;
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that should be provided before the module is installed.
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INSTALLATION
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* *
* Under no circumstances and under no legal theory, whether tort *
* (including negligence), contract, or otherwise, shall any *
* Contributor, or anyone who distributes Covered Software as *
* permitted above, be liable to You for any direct, indirect, *
* special, incidental, or consequential damages of any character *
* including, without limitation, damages for lost profits, loss of *
* goodwill, work stoppage, computer failure or malfunction, or any *
* and all other commercial damages or losses, even if such party *
* shall have been informed of the possibility of such damages. This *
* limitation of liability shall not apply to liability for death or *
* personal injury resulting from such party's negligence to the *
* extent applicable law prohibits such limitation. Some *
* jurisdictions do not allow the exclusion or limitation of *
* incidental or consequential damages, so this exclusion and *
* limitation may not apply to You. *
* *
************************************************************************
8. Litigation
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that should be provided before the module is installed.
A README file is required for CPAN modules since CPAN extracts the README
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fixes for the module are worth downloading.
INSTALLATION
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GNU General Public License, you may choose any version ever published
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Alien::PNG->config('ld_shlib_map');
Returns a reference to hash of value pairs '<libnick>' => '<full_path_to_shlib'>,
where '<libnick>' is shortname for PNG related library like: PNG.
NOTE: config('ld_<something>') return an empty list/hash if you have decided to
use PNG libraries already installed on your system. This concerns 'libpng-config'
detection and detection via '$PNG_INST_DIR/bin/libpng-config'.
=head2 check_header()
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version or of any later version published by the Free Software
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GNU General Public License, you may choose any version ever published
by the Free Software Foundation.
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command generated. The notes from L<"full_buffer"> apply.
=back
See the L<"HOW IT WORKS"> section below to see how C<IPC::Cmd> decides
what modules or function calls to use when issuing a command.
=cut
{ my @acc = qw[ok error _fds];
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pc:*:*:*)
# Left here for compatibility:
# uname -m prints for DJGPP always 'pc', but it prints nothing about
# the processor, so we play safe by assuming i586.
# Note: whatever this is, it MUST be the same as what config.sub
# prints for the "djgpp" host, or else GDB configure will decide that
# this is a cross-build.
echo i586-pc-msdosdjgpp
exit ;;
Intel:Mach:3*:*)
echo i386-pc-mach3
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Returns a reference to hash of value pairs '<libnick>' => '<full_path_to_shlib'>,
where '<libnick>' is shortname for SDL related library like: SDL, SDL_gfx, SDL_net,
SDL_sound ... + some non-SDL shortnames e.g. smpeg, jpeg, png.
NOTE: config('ld_<something>') return an empty list/hash if you have decided to
use SDL libraries already installed on your system. This concerns 'sdl-config'
detection and detection via '$SDL_INST_DIR/bin/sdl-config'.
=head2 check_header()
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Returns a reference to hash of value pairs '<libnick>' => '<full_path_to_shlib'>,
where '<libnick>' is shortname for SDL2 related library like: SDL2, SDL2_gfx, SDL2_net,
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NOTE: config('ld_<something>') return an empty list/hash if you have decided to
use SDL2 libraries already installed on your system. This concerns 'sdl2-config'
detection.
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* Repository has been moved to the evalEmpire organization.
* The bug tracker is now on Github.
1.7.17.1 Thu Jun 12 10:03:41 PDT 2014
Bug Fixes
* Accidentally left out the subversion build/ directory causing
configure to fail.
1.7.17.0 Wed Jun 11 20:41:57 PDT 2014
Features
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dark grey: #7F7396
purple-ish grey: #9FA6B4
light grey: #F5F5F5 (Menu dropdown blocks)
font-family: Verdana, Arial, Helvetica, sans-serif;
font-family: "Lucida Sans Unicode", "Lucida Grande", sans-serif;
"Lucida Console", Monaco, monospace;
Georgia,"Times New Roman",Times,serif;
*/
/* RESET PAGE STYLING - for consistency across browsers (avoid using their differing defaults) */
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body{
-webkit-text-size-adjust: 100%;
padding:0;
margin:0;
background:white;
font-family:"Lucida Sans Unicode", "Lucida Grande", sans-serif;
}
#footer{
height:22px;
clear:both;
bottom:0;
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blockquote{
margin: 15px 30px;
}
code{
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font-size:inherit;
font-style:normal;
font-weight:normal;
text-decoration:none;
color:#3D5B96;
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text-align:right;
}
/* used for example code */
.codeblock{
font-family:"lucida sans typewriter", courier, monospace;
font-size:9pt;
font-style:normal;
font-weight:normal;
color:#3D5B96;
background-color:#F5F5F5;
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inc/My/Module/Build.pm view on Meta::CPAN
use Test::More "no_plan";
########### Dependent graph stuff ################
# We keep the tests in a separate package so that if we later decide
# to refactor the dependent graph stuff into a standalone
# Module::Build plug-in, a simple cut-n-paste operation will do the
# job.
do {
# We re-route the process of creating a Module::Build object to
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use strict 'vars';
use vars qw{$VERSION};
BEGIN {
# All Module::Install core packages now require synchronised versions.
# This will be used to ensure we don't accidentally load old or
# different versions of modules.
# This is not enforced yet, but will be some time in the next few
# releases once we can make sure it won't clash with custom
# Module::Install extensions.
$VERSION = '0.62';
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lib/Alien/SeqAlignment/bowtie2.pm view on Meta::CPAN
Alien::SeqAlignment::bowtie2->bowtie2_build_s (list of arguments)
Alien::SeqAlignment::bowtie2->bowtie2_build_l (list of arguments)
Returns the command name for the python application bowtie2-build,that builds
the database of the reference sequences. bowtie2-build can generate either
small or large indexes. The wrapper will decide which based on the length of
the input genome. If the reference does not exceed 4 billion characters but
a large index is preferred, the user can specify --large-index to force
bowtie2-build to build a large index instead.
The methods Alien::SeqAlignment::bowtie2->bowtie2_build_s and
Alien::SeqAlignment::bowtie2->bowtie2_build_l return the names of the *binary*
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such claims; this section has the sole purpose of protecting the
integrity of the free software distribution system, which is
implemented by public license practices. Many people have made
generous contributions to the wide range of software distributed
through that system in reliance on consistent application of that
system; it is up to the author/donor to decide if he or she is willing
to distribute software through any other system and a licensee cannot
impose that choice.
This section is intended to make thoroughly clear what is believed to
be a consequence of the rest of this License.
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8. Limitation of Liability. In no event and under no legal theory,
whether in tort (including negligence), contract, or otherwise,
unless required by applicable law (such as deliberate and grossly
negligent acts) or agreed to in writing, shall any Contributor be
liable to You for damages, including any direct, indirect, special,
incidental, or consequential damages of any character arising as a
result of this License or out of the use or inability to use the
Work (including but not limited to damages for loss of goodwill,
work stoppage, computer failure or malfunction, or any and all
other commercial damages or losses), even if such Contributor
has been advised of the possibility of such damages.
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version or of any later version published by the Free Software
Foundation. If the Program does not specify a version number of the
GNU General Public License, you may choose any version ever published
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If the Program specifies that a proxy can decide which future
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pc:*:*:*)
# Left here for compatibility:
# uname -m prints for DJGPP always 'pc', but it prints nothing about
# the processor, so we play safe by assuming i586.
# Note: whatever this is, it MUST be the same as what config.sub
# prints for the "djgpp" host, or else GDB configury will decide that
# this is a cross-build.
echo i586-pc-msdosdjgpp
exit ;;
Intel:Mach:3*:*)
echo i386-pc-mach3
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