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found more than 644 distributions - search limited to the first 2001 files matching your query
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Benchmark-Featureset-LocaleCountry
view release on metacpan or search on metacpan
htdocs/assets/css/benchmark/featureset/localecountry/default.css view on Meta::CPAN
{
background: #88A088;
color: red;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 8pt;
font-weight: bold;
text-align: left;
}
.headline
{
htdocs/assets/css/benchmark/featureset/localecountry/default.css view on Meta::CPAN
.local_toc_heading
{
color: teal;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 12pt;
font-weight: bold;
text-align: center;
}
.local_toc_prefix
{
htdocs/assets/css/benchmark/featureset/localecountry/default.css view on Meta::CPAN
.page_heading
{
color: blue;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 16pt;
font-weight: bold;
text-align: center;
white-space: nowrap;
}
.small_gray_text
htdocs/assets/css/benchmark/featureset/localecountry/default.css view on Meta::CPAN
border-left-width: 1px;
border-right-width: 1px;
color: navy;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 8pt;
font-weight: bold;
width: auto;
}
Benchmark-Featureset-SetOps
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htdocs/assets/css/benchmark/featureset/setops/default.css view on Meta::CPAN
{
background: #88A088;
color: red;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 8pt;
font-weight: bold;
text-align: left;
}
.headline
{
htdocs/assets/css/benchmark/featureset/setops/default.css view on Meta::CPAN
.local_toc_heading
{
color: teal;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 12pt;
font-weight: bold;
text-align: center;
}
.local_toc_prefix
{
htdocs/assets/css/benchmark/featureset/setops/default.css view on Meta::CPAN
.page_heading
{
color: blue;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 16pt;
font-weight: bold;
text-align: center;
white-space: nowrap;
}
.small_gray_text
htdocs/assets/css/benchmark/featureset/setops/default.css view on Meta::CPAN
border-left-width: 1px;
border-right-width: 1px;
color: navy;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 8pt;
font-weight: bold;
width: auto;
}
Benchmark-Featureset-StopwordLists
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htdocs/assets/css/benchmark/featureset/stopwordlists/default.css view on Meta::CPAN
{
background: #88A088;
color: red;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 8pt;
font-weight: bold;
text-align: left;
}
.headline
{
htdocs/assets/css/benchmark/featureset/stopwordlists/default.css view on Meta::CPAN
.local_toc_heading
{
color: teal;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 12pt;
font-weight: bold;
text-align: center;
}
.local_toc_prefix
{
htdocs/assets/css/benchmark/featureset/stopwordlists/default.css view on Meta::CPAN
.page_heading
{
color: blue;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 16pt;
font-weight: bold;
text-align: center;
white-space: nowrap;
}
.small_gray_text
htdocs/assets/css/benchmark/featureset/stopwordlists/default.css view on Meta::CPAN
border-left-width: 1px;
border-right-width: 1px;
color: navy;
font-family: Verdana, Helvetica, Arial, sans-serif;
font-size: 8pt;
font-weight: bold;
width: auto;
}
Benchmark-Harness-Graph
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sub htmlStyle {
<<EOT;
<style>
<!--
.x_legend {
font-weight: bold;
text-align: center;
}
.y1_legend {
font-weight: bold;
font-size: 12;
text-align: center;
vertical-align: middle;
text-color: green;
}
.y2_legend {
font-weight: bold;
font-size: 12;
text-align: center;
vertical-align: middle;
text-color: red;
}
Benchmark-Perl-Formance-Cargo
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share/PerlCritic/Critic/Config.pm view on Meta::CPAN
theme = risky + (pbp * security) - cosmetic #A theme expression
include = NamingConventions ClassHierarchies #Space-delimited list
exclude = Variables Modules::RequirePackage #Space-delimited list
color = 1 #Zero or One
allow_unsafe = 1 #Zero or One
color-severity-highest = bold red #Term::ANSIColor
color-severity-high = magenta #Term::ANSIColor
color-severity-medium = #no coloring
color-severity-low = #no coloring
color-severity-lowest = #no coloring
program-extensions = #Space-delimited list
BerkeleyDB
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#ifndef IVSIZE
# ifdef LONGSIZE
# define IVSIZE LONGSIZE
# else
# define IVSIZE 4 /* A bold guess, but the best we can make. */
# endif
#endif
#ifndef UVTYPE
# define UVTYPE unsigned IVTYPE
#endif
Bhagavatgita
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lib/Bhagavatgita.pm view on Meta::CPAN
If one offers Me with love and devotion a leaf, a flower, fruit or water, I will accept it.
Whatever you do, whatever you eat, whatever you offer or give away, and whatever austerities you perform — do that, O son of Kuntī, as an offering to Me.
In this way you will be freed from bondage to work and its auspicious and inauspicious results. With your mind fixed on Me in this principle of renunciation, you will be liberated and come to Me.
I envy no one, nor am I partial to anyone. I am equal to all. But whoever renders service unto Me in devotion is a friend, is in Me, and I am also a friend to him.
Even if one commits the most abominable action, if he is engaged in devotional service he is to be considered saintly because he is properly situated in his determination.
He quickly becomes righteous and attains lasting peace. O son of Kuntī, declare it boldly that My devotee never perishes.
O son of PrÌ£thÄ, those who take shelter in Me, though they be of lower birth — women, vaiÅ›yas [merchants] and śūdras [workers] — can attain the supreme destination.
How much more this is so of the righteous brÄhmanÌ£as, the devotees and the saintly kings. Therefore, having come to this temporary, miserable world, engage in loving service unto Me.
Engage your mind always in thinking of Me, become My devotee, offer obeisances to Me and worship Me. Being completely absorbed in Me, surely you will come to Me.
The Supreme Personality of Godhead said: Listen again, O mighty-armed Arjuna. Because you are My dear friend, for your benefit I shall speak to you further, giving knowledge that is better than what I have already explained.
Neither the hosts of demigods nor the great sages know My origin or opulences, for, in every respect, I am the source of the demigods and sages.
lib/Bhagavatgita.pm view on Meta::CPAN
If one offers Me with love and devotion a leaf, a flower, fruit or water, I will accept it.
Whatever you do, whatever you eat, whatever you offer or give away, and whatever austerities you perform — do that, O son of Kuntī, as an offering to Me.
In this way you will be freed from bondage to work and its auspicious and inauspicious results. With your mind fixed on Me in this principle of renunciation, you will be liberated and come to Me.
I envy no one, nor am I partial to anyone. I am equal to all. But whoever renders service unto Me in devotion is a friend, is in Me, and I am also a friend to him.
Even if one commits the most abominable action, if he is engaged in devotional service he is to be considered saintly because he is properly situated in his determination.
He quickly becomes righteous and attains lasting peace. O son of Kuntī, declare it boldly that My devotee never perishes.
O son of PrÌ£thÄ, those who take shelter in Me, though they be of lower birth — women, vaiÅ›yas [merchants] and śūdras [workers] — can attain the supreme destination.
How much more this is so of the righteous brÄhmanÌ£as, the devotees and the saintly kings. Therefore, having come to this temporary, miserable world, engage in loving service unto Me.
Engage your mind always in thinking of Me, become My devotee, offer obeisances to Me and worship Me. Being completely absorbed in Me, surely you will come to Me.The Supreme Personality of Godhead said: Listen again, O mighty-armed Arjuna. Because you...
Neither the hosts of demigods nor the great sages know My origin or opulences, for, in every respect, I am the source of the demigods and sages.
He who knows Me as the unborn, as the beginningless, as the Supreme Lord of all the worlds — he only, undeluded among men, is freed from all sins.
lib/Bhagavatgita.pm view on Meta::CPAN
If one offers Me with love and devotion a leaf, a flower, fruit or water, I will accept it.
Whatever you do, whatever you eat, whatever you offer or give away, and whatever austerities you perform — do that, O son of Kuntī, as an offering to Me.
In this way you will be freed from bondage to work and its auspicious and inauspicious results. With your mind fixed on Me in this principle of renunciation, you will be liberated and come to Me.
I envy no one, nor am I partial to anyone. I am equal to all. But whoever renders service unto Me in devotion is a friend, is in Me, and I am also a friend to him.
Even if one commits the most abominable action, if he is engaged in devotional service he is to be considered saintly because he is properly situated in his determination.
He quickly becomes righteous and attains lasting peace. O son of Kuntī, declare it boldly that My devotee never perishes.
O son of PrÌ£thÄ, those who take shelter in Me, though they be of lower birth — women, vaiÅ›yas [merchants] and śūdras [workers] — can attain the supreme destination.
How much more this is so of the righteous brÄhmanÌ£as, the devotees and the saintly kings. Therefore, having come to this temporary, miserable world, engage in loving service unto Me.
Engage your mind always in thinking of Me, become My devotee, offer obeisances to Me and worship Me. Being completely absorbed in Me, surely you will come to Me.
The Supreme Personality of Godhead said: Listen again, O mighty-armed Arjuna. Because you are My dear friend, for your benefit I shall speak to you further, giving knowledge that is better than what I have already explained.
Bib-CrossRef
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lib/Bib/CrossRef.pm view on Meta::CPAN
sub printheader {
my $self = shift @_;
my $id = shift @_;
my $str = '';
if (defined $id) {$str = 'id="'.$id.'"';}
return '<table '.$str.'><tr style="font-weight:bold"><td></td><td>Use</td><td></td><td>Type</td><td>Year</td><td>Authors</td><td>Title</td><td>Journal</td><td>Volume</td><td>Issue</td><td>Pages</td><td>DOI</td><td>url</td><td></td></tr>'."\n";
}
sub printfooter {
return "</table>\n";
}
Bib-Tools
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my $out;
ok($out = $refs->print);
is($out,$out1."\n");
ok($out=$refs->send_resp);
my $expected=<<"END";
<!DOCTYPE HTML><html><head><meta charset="utf-8"><meta http-equiv="Content-Type"><script src="post.js"></script></head><body><table id="doi"><tr style="font-weight:bold"><td></td><td>Use</td><td></td><td>Type</td><td>Year</td><td>Authors</td><td>Titl...
<tr id="cite"><td>1</td><td><input type="checkbox" name="1" value="" checked></td><td></td><td contenteditable="true">article</td><td contenteditable="true">2015</td><td contenteditable="true">D. J. Leith and W. E. Leithead</td><td contenteditable="t...
<tr><td colspan=12 style="color:#C0C0C0"></td></tr>
</table>
<input id="Submit" type="button" value="Submit" onclick="GetCellValues(\'doi\');GetCellValues('nodoi');" /><div id="out"></div></body></html>
BigIP-GTM-ParseConfig
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example/example.pl view on Meta::CPAN
# Add a worksheet
my $worksheet = $workbook->add_worksheet( $GTM . '_DNS_details' );
# Add and define a format
my $format = $workbook->add_format(); # Add a format
$format->set_bold();
$format->set_color('blue');
$format->set_bg_color('red');
$format->set_size(18);
$format->set_border(1);
$format->set_align('center');
BigIP-LTM-ParseConfig
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example/example.pl view on Meta::CPAN
# Add a worksheet
my $worksheet = $workbook->add_worksheet( $ltm . '_Virtual_Server' );
# Add and define a format
my $format = $workbook->add_format(); # Add a format
$format->set_bold();
$format->set_color('blue');
$format->set_bg_color('red');
$format->set_size(18);
$format->set_border(1);
$format->set_align('center');
Bigtop
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docs/keyword_cookbook/RPCSoap/Kids/html/templates/genwrapper.tt view on Meta::CPAN
#nav ul li { display: block; float: left; text-align: center; padding: 0; margin: 0; border-left: 1px solid #99d;}
#nav ul li + li { border-left: none; display: block; float: left; text-align: center; padding: 0; margin: 0;}
#nav ul li a { background: #fff; border-bottom: 1px solid #99d; border-right: 1px solid #99d; border-left: none; padding: 0 8px 0 8px; margin: 0 0 0px 0; color: #9a9a9a; text-decoration: none; display: block; text-align: center; font: normal 12px...
#nav ul li a:hover { color: #000; background: #bbe;}
#nav a:active { background: #c60; color: #fff;}
#nav li strong a { background: #bbf; font-weight: bold; color: #000;}
.lowtech { visibility: hidden;}
</style>
</head>
Bin-Text-Color-Plus
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scripts/resistorcc view on Meta::CPAN
use Getopt::Std ;
getopts '' , \my %o ;
my @givecolor = map { color ( $_ ) }
(
'dark white' , 'faint bold red', # 'dark on_bright_red black', # 0 1
'red ', 'bright_red' , 'yellow' , # 2 3 4
'green', 'bright_blue', 'bold magenta', # 5 6 7
'white', 'bold bright_white' # 8 9
) ;
while ( <> ) {
$_ = decode_utf8 $_ ;
Bio-Chado-Schema
view release on metacpan or search on metacpan
doc/slides/dbic_intro/slides/ui/pretty.css view on Meta::CPAN
blockquote p {margin: 0;}
blockquote i {font-style: normal;}
blockquote b {display: block; margin-top: 0.5em; font-weight: normal; font-size: smaller; font-style: normal;}
blockquote b i {font-style: italic;}
kbd {font-weight: bold; font-size: 1em;}
sup {font-size: smaller; line-height: 1px;}
code {padding: 2px 0.25em; font-weight: bold; color: #555;}
code.bad, code del {color: red;}
code.old {color: silver;}
pre {font-size: .7em;
margin: 0 auto;
background-color: #f3f3f3;
doc/slides/dbic_intro/slides/ui/pretty.css view on Meta::CPAN
div#header, div#footer {color: #AAB;
font-family: Verdana, Helvetica, sans-serif;}
div#header {background: #cc3300;
line-height: 1px;}
div#footer {font-size: 0.5em; font-weight: bold; padding: 1em 0; color: #666;}
#footer h1, #footer h2 {display: block; padding: 0 1em;}
#footer h2 {margin-top: 0.5em;}
div.long {font-size: 0.75em;}
.slide h1 {position: absolute; top: 0.8em; left: 0; z-index: 1;
margin-left: 85px; padding: 0; white-space: nowrap;
font-weight: bold; font-size: 150%; line-height: 1;
color: #f3f3f3;}
.slide h3 {font-size: 130%;}
h1 abbr {font-variant: small-caps;}
div#controls {position: absolute; z-index: 1; left: 75%; top: 0;
doc/slides/dbic_intro/slides/ui/pretty.css view on Meta::CPAN
}
#next {
text-align: left;
}
#currentSlide {text-align: center; font-size: 0.5em; color: #666; font-weight: bold;}
#currentSlide span {display: none;}
#slide0 {padding-top: 3.5em; font-size: 90%;}
#slide0 h1 {position: static; margin: 1em 0 1.33em; padding: 5px 0 5px 20px;
font: bold 2.2em Arial, Verdana, sans-serif; white-space: normal;
color: #000; background: transparent url(slide0h1.gif) no-repeat left bottom;
text-transform: none; }
#slide0 h3 {margin-top: 0.3em; font-size: 1.2em;}
#slide0 h4 {margin:0; font-size: 0.9em;}
Bio-ConnectDots
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lib/Bio/ConnectDots/doc/cpan.css view on Meta::CPAN
padding: 1px;
}
.menubar A {
padding: 0.8ex;
font: bold 10pt Arial,Helvetica,sans-serif;
}
.menubar A:link, .menubar A:visited {
color: white;
text-decoration: none;
lib/Bio/ConnectDots/doc/cpan.css view on Meta::CPAN
padding: 0 1ex;
vertical-align: top;
}
.l1 {
font-weight: bold;
}
.l2 {
font-weight: normal;
}
lib/Bio/ConnectDots/doc/cpan.css view on Meta::CPAN
margin: 0;
}
.t1 {
font-size: 1.4em;
font-weight: bold;
text-align: center;
}
.t2 {
font-size: 1.0em;
font-weight: bold;
text-align: left;
}
.t3 {
font-size: 1.0em;
lib/Bio/ConnectDots/doc/cpan.css view on Meta::CPAN
}
.label {
background: #aaaaaa;
color: black;
font-weight: bold;
padding: 0.2ex 1ex;
text-align: right;
white-space: nowrap;
vertical-align: baseline;
}
lib/Bio/ConnectDots/doc/cpan.css view on Meta::CPAN
}
.path A {
background: transparent;
color: #006699;
font-weight: bold;
}
.pages {
background: #dddddd;
color: #006699;
lib/Bio/ConnectDots/doc/cpan.css view on Meta::CPAN
}
A.m:link, A.m:visited {
background: #006699;
color: white;
font: bold 10pt Arial,Helvetica,sans-serif;
text-decoration: none;
}
A.o:link, A.o:visited {
background: #006699;
color: #ccffcc;
font: bold 10pt Arial,Helvetica,sans-serif;
text-decoration: none;
}
A.o:hover {
background: transparent;
lib/Bio/ConnectDots/doc/cpan.css view on Meta::CPAN
list-style-type: none;
}
.faq DT {
font-size: 1.4em;
font-weight: bold;
}
.chmenu {
background: black;
color: red;
font: bold 1.1em Arial,Helvetica,sans-serif;
margin: 1ex auto;
padding: 0.5ex;
}
.chmenu TD {
Bio-DB-Big
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#ifndef IVSIZE
# ifdef LONGSIZE
# define IVSIZE LONGSIZE
# else
# define IVSIZE 4 /* A bold guess, but the best we can make. */
# endif
#endif
#ifndef UVTYPE
# define UVTYPE unsigned IVTYPE
#endif
Bio-DB-HTS
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#ifndef IVSIZE
# ifdef LONGSIZE
# define IVSIZE LONGSIZE
# else
# define IVSIZE 4 /* A bold guess, but the best we can make. */
# endif
#endif
#ifndef UVTYPE
# define UVTYPE unsigned IVTYPE
#endif
Bio-Emboss
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#ifndef IVSIZE
# ifdef LONGSIZE
# define IVSIZE LONGSIZE
# else
# define IVSIZE 4 /* A bold guess, but the best we can make. */
# endif
#endif
#ifndef UVTYPE
# define UVTYPE unsigned IVTYPE
#endif
Bio-Epithelium
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lib/Bio/Epithelium.pm view on Meta::CPAN
=head1 SEE ALSO
=head1 AUTHOR
koboldwiz, E<lt>koboldwiz@yahoo.comE<gt>
=head1 COPYRIGHT AND LICENSE
Copyright (C) 2021 by koboldwiz
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself, either Perl version 5.28.2 or,
at your option, any later version of Perl 5 you may have available.
Bio-Genex
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samples/query-intro.pl.in view on Meta::CPAN
alignment: left;
indent: 20pt;
}
P.Alert {
font-size: 18;
font-style: bold;
font-family: serif;
alignment: left;
indent: 20pt;
}
END
Bio-Graphics
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lib/Bio/Graphics/DrawTransmembrane.pm view on Meta::CPAN
'c_terminal_offset' => { 'private' => 'c_term_offset',
'default' => 0},
## colour scheme & display options
'show_labels' => { 'private' => 'labels',
'default' => 'on'},
'bold_helices' => { 'private' => 'bold_helices',
'default' => 1},
'bold_labels' => { 'private' => 'bold_labels',
'default' => 0},
'colour_scheme' => { 'private' => 'scheme',
'default' => 'yellow'},
'draw_cytosol' => { 'private' => 'draw_cytosol',
'default' => 0},
lib/Bio/Graphics/DrawTransmembrane.pm view on Meta::CPAN
$self->{'im'}->filledRectangle($x+4,$y+4,($x + $self->{'helix_width'})-4,($y + $self->{'helix_height'})-4,$colour2);
$self->{'im'}->filledRectangle($x+5,$y+5,($x + $self->{'helix_width'})-5,($y + $self->{'helix_height'})-5,$colour1);
$self->{'im'}->filledRectangle($x+6,$y+6,($x + $self->{'helix_width'})-6,($y + $self->{'helix_height'})-6,$colour);
## draw a white box around it
if ($self->{'bold_helices'}){
$self->{'im'}->rectangle($x,$y,($x + $self->{'helix_width'}),($y + $self->{'helix_height'}),$self->{'black'});
$self->{'im'}->rectangle($x - 1,$y - 1,($x + $self->{'helix_width'} + 1),($y + $self->{'helix_height'} + 1),$self->{'white'});
}else{
$self->{'im'}->rectangle($x,$y,($x + $self->{'helix_width'}),($y + $self->{'helix_height'}),$self->{'white'});
}
lib/Bio/Graphics/DrawTransmembrane.pm view on Meta::CPAN
$label_length = 9 + (6 * length $self->{'loop_labels'}{$l});
}
if ($_ % 2){
if ($self->{'bold_labels'}){
$self->{'im'}->filledRectangle(($x + ($self->{'helix_width'} / 2)) + 5,($y + ($self->{'helix_height'} / 2) - 30) + $y_mod,$label_length + ($x + ($self->{'helix_width'} / 2)) + 2,12 + ($y + ($self->{'helix_height'} / 2) - 24) + $y_mod,$self->{'...
my $b = new GD::Polygon;
$b->addPt(($x + ($self->{'helix_width'} / 2)) + 4,($y + ($self->{'helix_height'} / 2) - 30) + $y_mod,$label_length + ($x + ($self->{'helix_width'} / 2)));
$b->addPt(($x + ($self->{'helix_width'} / 2)) - 5,($y + ($self->{'helix_height'} / 2) - 21) + $y_mod,$label_length + ($x + ($self->{'helix_width'} / 2)));
$b->addPt(($x + ($self->{'helix_width'} / 2)) + 4,($y + ($self->{'helix_height'} / 2) - 12) + $y_mod,$label_length + ($x + ($self->{'helix_width'} / 2)));
lib/Bio/Graphics/DrawTransmembrane.pm view on Meta::CPAN
$y_mod = $y_mod - 19;
}else{
if ($self->{'bold_labels'}){
$self->{'im'}->filledRectangle(($x + ($self->{'helix_width'} / 2)) + 5,($y + ($self->{'helix_height'} / 2) + 9) + $y_mod,$label_length + ($x + ($self->{'helix_width'} / 2)) + 2,13 + ($y + ($self->{'helix_height'} / 2) + 15) + $y_mod,$self->{'b...
my $b = new GD::Polygon;
$b->addPt(($x + ($self->{'helix_width'} / 2)) + 4,($y + ($self->{'helix_height'} / 2) + 10) + $y_mod,$label_length + ($x + ($self->{'helix_width'} / 2)));
$b->addPt(($x + ($self->{'helix_width'} / 2)) - 5,($y + ($self->{'helix_height'} / 2) + 19) + $y_mod,$label_length + ($x + ($self->{'helix_width'} / 2)));
$b->addPt(($x + ($self->{'helix_width'} / 2)) + 4,($y + ($self->{'helix_height'} / 2) + 28) + $y_mod,$label_length + ($x + ($self->{'helix_width'} / 2)));
lib/Bio/Graphics/DrawTransmembrane.pm view on Meta::CPAN
170 => '170 - Phosphorylation Site',
200 => 'Last Helix');
my $im = Bio::Graphics::DrawTransmembrane->new(-n_terminal=> 'out',
-topology => \@topology,
-bold_helices=> 1,
-labels=> \%labels,
-text_offset=> -15,
-outside_label=>'Lumen',
-inside_label=>'Cytoplasm',
-membrane_label=>'Membrane',
lib/Bio/Graphics/DrawTransmembrane.pm view on Meta::CPAN
## Parse Tmhmm data
use Bio::Tools::Tmhmm;
my $im = Bio::Graphics::DrawTransmembrane->new(
-title=>'Let\'s parse some Tmhmm output...',
-bold_helices=> 1);
open(FILE, 'tmhmm.out');
my $parser = new Bio::Tools::Tmhmm(-fh => \*FILE );
while(my $tmhmm_feat = $parser->next_result ) {
## Load features into DrawTransmembrane object
$im->add_tmhmm_feat($tmhmm_feat);
lib/Bio/Graphics/DrawTransmembrane.pm view on Meta::CPAN
190 => 'Binding Site');
The hash key must be numeric, ranges are
not allowed.
-bold_helices Draws black boxes round helices 1
-bold_labels Draws black boxes round labels 0
-text_offset Shift the text labeling the loops. Use a 0
negative value to shift it left, a positive
value to shift it right
Bio-Grep
view release on metacpan or search on metacpan
lib/Bio/Grep.pm view on Meta::CPAN
=begin html
<table><tr><th>Feature</th><th>Agrep</th><th>GUUGle</th><th>RE</th><th>Vmatch</th></tr><tr><td>Suffix Arrays/Trees</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Sliding Window</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
</tr>
<tr><td>Persistent Index<sup>1</sup></td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Mismatches</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Edit Distance</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Insertions</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
lib/Bio/Grep.pm view on Meta::CPAN
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
</tr>
<tr><td>Multiple Queries<sup>2</sup></td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>GU</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
</tr>
<tr><td>DNA/RNA</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Protein</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Direct and Revcom</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Reverse Complement</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Upstream/Downstream</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Filters</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Query Length<sup>3</sup></td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
</tr>
<tr><td>Regular Expressions<sup>4</sup></td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
<td style="font-weight: bold;text-align: center;background-color: #00ff00;">yes</td>
<td style="text-align:center;background-color: #ffe0e0;">no</td>
</tr>
</table><br/><div style="font-size: smaller"><hr width="300"
align="left"><sup>1</sup>Needs pre-calculation and (much) more memory but queries are in general faster<br/><sup>2</sup>With query_file<br/><sup>3</sup>Matches if a substring of the query of size n or larger matches<br/><sup>4</sup>Agrep soon</div>
Bio-MCPrimers
view release on metacpan or search on metacpan
mcprimers_gui.pl view on Meta::CPAN
$text_frame = $mw->Frame->pack(-pady=>5, -side=>'top', -anchor=>'nw');
$text_message = $text_frame->Message(
-width => 600,
-text => "First load a vector file and a DNA nucleotide sequence in FASTA format",
-font => 'Helvetica 12 bold');
$text_message->pack(-anchor=>'nw', -padx=>20);
}
###################################################################
mcprimers_gui.pl view on Meta::CPAN
$fname_frame = $right_frame->Frame->pack(-padx=>5, -pady=>2, -anchor=>'nw');
$fname_message = $fname_frame->Message(
-width => 200,
-text => "FASTA: undefined",
-font => 'Helvetica 10 bold')->pack(-anchor=>'nw');
$start_scale_frame = $right_frame->Frame->pack(-padx=>5, -pady=>2, -anchor=>'nw');
$start_scale_frame->Message(
-text => "Search NTs past start codon",
-font => 'Helvetica 10 bold',
-width => 200)->pack(-anchor=>'nw');
$start_scale_frame->Scale(
-resolution => 1,
-from => 60,
-to => 0,
mcprimers_gui.pl view on Meta::CPAN
-sliderlength => 10,
-length => 180,
-orient => 'horizontal',
-showvalue => 1,
-state => 'active',
-font => 'Helvetica 10 bold',)->pack(-padx => 5, -anchor=>'nw');
$stop_scale_frame = $right_frame->Frame->pack(-padx=>5, -pady=>2, -anchor=>'nw');
$stop_scale_frame->Message(
-text => "Search NTs before stop codon",
-font => 'Helvetica 10 bold',
-width => 200)->pack(-anchor=>'nw');
$stop_scale_frame->Scale(
-resolution => 1,
-from => 60,
-to => 0,
mcprimers_gui.pl view on Meta::CPAN
-sliderlength => 10,
-length => 180,
-orient => 'horizontal',
-showvalue => 1,
-state => 'active',
-font => 'Helvetica 10 bold',)->pack(-padx => 5, -anchor=>'nw');
$maxchanges_frame = $right_frame->Frame->pack(-padx=>5, -pady=>2, -anchor=>'nw');
$maxchanges_frame->Message(
-text => "Maximum changes per primer",
-font => 'Helvetica 10 bold',
-width => 200,
)->pack(-anchor=>'nw');
$maxchanges_frame->Scale(
-resolution => 1,
-from => 3,
mcprimers_gui.pl view on Meta::CPAN
-sliderlength => 10,
-length => 180,
-orient => 'horizontal',
-showvalue => 1,
-state => 'active',
-font => 'Helvetica 10 bold',)->pack(-padx => 5, -anchor=>'nw');
$para_frame = $right_frame->Frame->pack(-padx=>5, -pady=>2, -anchor=>'nw');
$para_frame->Message(
-text => "GC clamping",
-font => 'Helvetica 10 bold',
-width => 160)->pack(-anchor=>'nw');
$para_frame->Radiobutton (
-text => 'GC clamp 3\' and 5\'',
-variable => \$clamp,
-value => 'both',
mcprimers_gui.pl view on Meta::CPAN
$p3_frame = $right_frame->Frame->pack(-padx=>5, -pady=>2, -anchor=>'nw');
$p3_frame->Message(
-text => "Primer3 file",
-font => 'Helvetica 10 bold',
-width => 200)->pack(-anchor=>'nw');
$p3_check = $p3_frame->Checkbutton (
-text => 'Unspecified',
-variable => \$p3_used,
-state => 'disabled',
mcprimers_gui.pl view on Meta::CPAN
$vec_frame = $right_frame->Frame->pack(-padx=>5, -pady=>2, -anchor=>'nw');
$vec_message = $vec_frame->Message(
-width => 200,
-text => "\n",
-font => 'Helvetica 10 bold')->pack(-anchor=>'nw');
}
###################################################################
Bio-MUST-Apps-FortyTwo
view release on metacpan or search on metacpan
bin/yaml-generator-42.pl view on Meta::CPAN
use IO::Prompter [
-verbatim,
-style => 'blue strong ',
-must => { 'be a string' => qr{\S+} }
];
# bold => [qw<boldly strong heavy emphasis emphatic highlight highlighted fort forte>],
# dark => [qw<darkly dim deep>],
# faint => [qw<faintly light soft>],
# underline => [qw<underlined underscore underscored italic italics>],
# blink => [qw<blinking flicker flickering flash flashing>],
# reverse => [qw<reversed inverse inverted>],
Bio-NEXUS
view release on metacpan or search on metacpan
t/data/compliant/Bird_Ovomucoids.nex view on Meta::CPAN
Dromaius_novaehollandiae ........D....L.....N..........D......A..??D?????...--.......S.E.......N..D.....N...G.... [86]
Nothoprocta_cinerascens .....A.D.....P...TP...A.NA.FGS....V....I..DHDK?????T-..G...AT.E.F..NQ.A..A....KNV....L.. [87]
Eudromia_elegans .R.....D.....P...TP..V.AN....S....V....I?.?????????S-I.G...AT.EFF..NQ....A.A..KNV..N.I.E [87]
Pygoscelis_adeliae_f .TF..........LVT.......T..................DHDKEVI..--.......S.E..............D.N...S.... [86]
Pygoscelis_adeliae_y .T...........LVT.......T..................DHDKEVI..--.......S.E..............D.N...S.... [86]
Spheniscus_humboldti .T.S.........LIT.......T..................D?DKEVI..--I......S.E..............D.N.I.S.... [86]
Phalacrocorax_sulcirostris .S.SK.......ALVT.......T..............KI..DHDKEVI..--.......S.E.............AD.N...S.... [86]
Anhinga_novaehollandeae .L.S.........LVT.......T................T.DHDKEVI.S--.......S.E..............D.N...S.... [86]
Nycticorax_nycticorax .T.S.A....R..LVT.......A..........M....I..DHDGEVIV.--.......SPEN.V.......D..AD.N...S.... [86]
Chauna_chavaria .R...........L.T.T.....T..................DRDKEAV..--......AT.E....NQ....S...D.N...S.... [86]
Anseranas_semipalmata .R...S.......L.T.D...................A....DHDKEAV..--..E...AT.E....NQ........D.N...S.... [86]
t/data/compliant/Bird_Ovomucoids.nex view on Meta::CPAN
5 Dromaius_novaehollandiae,
6 Nothoprocta_cinerascens,
7 Eudromia_elegans,
8 Pygoscelis_adeliae_f,
9 Pygoscelis_adeliae_y,
10 Spheniscus_humboldti,
11 Phalacrocorax_sulcirostris,
12 Anhinga_novaehollandeae,
13 Nycticorax_nycticorax,
14 Chauna_chavaria,
15 Anseranas_semipalmata,
Bio-Phylo-Beagle
view release on metacpan or search on metacpan
beagle_wrap.c view on Meta::CPAN
#ifndef IVSIZE
# ifdef LONGSIZE
# define IVSIZE LONGSIZE
# else
# define IVSIZE 4 /* A bold guess, but the best we can make. */
# endif
#endif
#ifndef INT2PTR
# if (IVSIZE == PTRSIZE) && (UVSIZE == PTRSIZE)
Bio-Phylo-Forest-DBTree
view release on metacpan or search on metacpan
lib/Bio/Phylo/Forest/DBTree/Result/Node.pm
LICENSE
Makefile.PL
MANIFEST This list of files
README.md
script/megatree-bold-loader
script/megatree-loader
script/megatree-ncbi-loader
script/megatree-phylotree-loader
script/megatree-pruner
script/megatree-pruner.py
Bio-Phylo
view release on metacpan or search on metacpan
lib/Bio/Phylo/Forest/DrawNodeRole.pm view on Meta::CPAN
Usage : $node->set_clade_label_font({ '-face' => 'Verdana' });
Function: Sets font properties for the clade label
Returns : $self
Args : {
'-face' => 'Verdana', # Arial, Times, etc.
'-weight' => 'bold',
'-style' => 'italic',
'-colour' => 'red',
}
=back
Bio-Roary
view release on metacpan or search on metacpan
contrib/roary_plots/roary.html view on Meta::CPAN
<style type="text/css">
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*
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*
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*
* Font Awesome
*
*//*!
* Font Awesome 4.3.0 by @davegandy - http://fontawesome.io - @fontawesome
* License - http://fontawesome.io/license (Font: SIL OFL 1.1, CSS: MIT License)
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*
* IPython base
*
*/.modal.fade .modal-dialog{-webkit-transform:translate(0, 0);-ms-transform:translate(0, 0);-o-transform:translate(0, 0);transform:translate(0, 0)}code{color:#000}pre{font-size:inherit;line-height:inherit}label{font-weight:normal}.border-box-sizing{b...
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contrib/roary_plots/roary.html view on Meta::CPAN
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