view release on metacpan or  search on metacpan

bin/GD_Filter_Enzymes.pl  view on Meta::CPAN

  List all enzymes that have at least 25% activity in NEB buffers 1 and 4 and
  are indifferent to CpG methylation
        GD_Filter_Enzymes.pl --buffer NEB1=25,NEB4=25 --cpgsense indifferent

  List all enzymes that exhibit star activity and are blocked or inhibited by
  Dam methylation
        GD_Filter_Enzymes.pl --staractivity 1 --damsense blocked,inhibited

  List all enzymes that may leave nonpalindromic overhangs (and those that
  definitely do) and whose recognition sequences do not contain AT or TA
        GD_Filter_Enzymes.pl --palindromy pnon,nonpal --seqmaynothave AT,TA

bin/GD_Filter_Enzymes.pl  view on Meta::CPAN

  --ambiguous     : [nonNonly OR ATCGonly] Are ambiguous bases allowed in the
                    recognition site. If yes to all, don't include this option
  --inactivation  : Enzymes must be inactivated by at least this temperature
  --incubation    : Enzymes must incubate at this temperature
  --staractivity  : [1 OR 0] Enzymes with or without star activity
  --cpgsense      : [blocked, inhibited, indifferent] Sensitivity to CpG
                    methylation
  --damsense      : [blocked, inhibited, indifferent] Sensitivity to Dam
                    methylation
  --dcmsense      : [blocked, inhibited, indifferent] Sensitivity to Dcm
                    methylation
  --buffer        : List of buffer activity thresholds. NEB1=50,NEB2=50 means
                    enzymes must have at least 50% activity in NEB buffers 1 & 2
                    Other=50 will work for non NEB buffers
  --pricemax      : The highest amount in dollars/unit an enzyme can cost

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data/db_tables/protocols.xml  view on Meta::CPAN

 developed protocols that give reproducible,
 high-quality hybridization results while maximizing
 the measured fluorescence from the array. 
 Aminosilane coated slides bind DNA with high
 efficiency. Prior to hybridization, the free amine groups
 on the slide must be blocked or inactivated, otherwise
 nonspecific binding of labeled cDNA to the slide can
 deplete the probe and produce high background.
 Although the slides can be blocked chemically, we have
 found a simple prehybridization in a solution
 containing 1% bovine serum albumin to be extremely
 effective in eliminating nonspecific binding of the probe
 to the slide. 
 Prehybridization has the additional advantage of

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lib/Bio/Graphics/Glyph/fb_shmiggle.pm  view on Meta::CPAN

					$ymax= $allowedymax if $ymax < $allowedymax; # set limit for huge peaks
					$gd->line($exstart,$ymax,$exstart,$ymax+2,$red);
					$gd->line($exstart,$ymax,$exend,$ymax,$red);
					}
			}
		if( 0 && $profilen>1 ) { # blocked - drawing roof lines doesn't work well with this view..
			for( my $en=3; $en<=$#allx; $en+=6 ) {
				next if $allvals[$en]==0 || $prevvals[$en]==0;
				my $y= $ally[$en];
				$yold= $prevy[$en];
				if( $yold<$y ) {

 view release on metacpan or  search on metacpan

scripts/Data/psi-mi.obo  view on Meta::CPAN

is_a: MI:0353 ! cross-reference type

[Term]
id: MI:0663
name: confocal microscopy
def: "A confocal is a standard epifluorescence microscope with improvement essentially coming from the rejection of out-of-focus light interference. Confocal imaging system achieves this by two strategies: a) by illuminating a single point of the spe...
subset: PSI-MI slim
is_a: MI:0428 ! imaging technique

[Term]
id: MI:0664

 view release on metacpan or  search on metacpan

contrib/roary_plots/roary_files/jquery.min.js  view on Meta::CPAN

/*! jQuery v2.0.3 | (c) 2005, 2013 jQuery Foundation, Inc. | jquery.org/license
//@ sourceMappingURL=jquery.min.map
*/
(function(e,undefined){var t,n,r=typeof undefined,i=e.location,o=e.document,s=o.documentElement,a=e.jQuery,u=e.$,l={},c=[],p="2.0.3",f=c.concat,h=c.push,d=c.slice,g=c.indexOf,m=l.toString,y=l.hasOwnProperty,v=p.trim,x=function(e,n){return new x.fn.in...
};"inprogress"===i&&(i=n.shift(),r--),i&&("fx"===t&&n.unshift("inprogress"),delete o.stop,i.call(e,s,o)),!r&&o&&o.empty.fire()},_queueHooks:function(e,t){var n=t+"queueHooks";return q.get(e,n)||q.access(e,n,{empty:x.Callbacks("once memory").add(funct...
},delegate:function(e,t,n,r){return this.on(t,e,n,r)},undelegate:function(e,t,n){return 1===arguments.length?this.off(e,"**"):this.off(t,e||"**",n)}});var Xt,Ut,Yt=x.now(),Vt=/\?/,Gt=/#.*$/,Jt=/([?&])_=[^&]*/,Qt=/^(.*?):[ \t]*([^\r\n]*)$/gm,Kt=/^(?:a...

 view release on metacpan or  search on metacpan

Bio/DB/GFF.pm  view on Meta::CPAN

 Returns : current value of lock-on-load flag
 Args    : new value of lock-on-load-flag
 Status  : Public

This method is honored by some of the adaptors.  If the value is true,
the tables used by the GFF modules will be locked for writing during
loads and inaccessible to other processes.

=cut

sub lock_on_load {

 view release on metacpan or  search on metacpan

lib/BioX/Seq/Fetch.pm  view on Meta::CPAN

Returns the length of the sequence given by C<$seq_id>. May be marginally
faster than fetching the sequence object and then finding the length.

=head1 COMPRESSION

C<BioX::Seq::Fetch> supports files compressed with blocked gzip (BGZIP),
typically using the C<bgzip> utility. This allows for pseudo-random access
without the need for full file decompression. The C<Compress::BGZIP> module is
required for this functionality.

 view release on metacpan or  search on metacpan

ex/tx/multisig_redeem.pl  view on Meta::CPAN

__END__

=head1 P2MS redeem transaction example

This transaction redeems coins locked in P2WSH output produced in
C<tx/multisig_create.pl> example. The exact redeem script must be provided and
two out of three private keys must be used to sign.

Signing requires providing C<redeem_script> argument with the script object, as
well as C<multisig> argument in format C<[$this_signature, $total_signatures]>.

 view release on metacpan or  search on metacpan

ppport.h  view on Meta::CPAN

get_av|5.006000|5.003007|p
getc|5.003007||Viu
get_c_backtrace|5.021001||Vi
get_c_backtrace_dump|5.021001||V
get_context|5.006000|5.006000|nu
getc_unlocked|5.003007||Viu
get_cv|5.006000|5.003007|p
get_cvn_flags|5.009005|5.003007|p
get_cvs|5.011000|5.003007|p
getcwd_sv|5.007002|5.007002|
get_db_sub|||iu

ppport.h  view on Meta::CPAN

PERL_MALLOC_WRAP|5.009002|5.009002|Vn
PerlMem_calloc|5.006000||Viu
PerlMem_free|5.005000||Viu
PerlMem_free_lock|5.006000||Viu
PerlMem_get_lock|5.006000||Viu
PerlMem_is_locked|5.006000||Viu
PerlMem_malloc|5.005000||Viu
PERL_MEMORY_DEBUG_HEADER_SIZE|5.019009||Viu
PerlMemParse_calloc|5.006000||Viu
PerlMemParse_free|5.006000||Viu
PerlMemParse_free_lock|5.006000||Viu
PerlMemParse_get_lock|5.006000||Viu
PerlMemParse_is_locked|5.006000||Viu
PerlMemParse_malloc|5.006000||Viu
PerlMemParse_realloc|5.006000||Viu
PerlMem_realloc|5.005000||Viu
PerlMemShared_calloc|5.006000||Viu
PerlMemShared_free|5.006000||Viu
PerlMemShared_free_lock|5.006000||Viu
PerlMemShared_get_lock|5.006000||Viu
PerlMemShared_is_locked|5.006000||Viu
PerlMemShared_malloc|5.006000||Viu
PerlMemShared_realloc|5.006000||Viu
PERL_MG_UFUNC|5.007001||Viu
Perl_modf|5.006000|5.006000|n
PERL_MULTICONCAT_HEADER_SIZE|5.027006||Viu

ppport.h  view on Meta::CPAN

putc|5.003007||Viu
put_charclass_bitmap_innards|5.021004||Viu
put_charclass_bitmap_innards_common|5.023008||Viu
put_charclass_bitmap_innards_invlist|5.023008||Viu
put_code_point|5.021004||Viu
putc_unlocked|5.003007||Viu
putenv|5.005000||Viu
put_range|5.019009||Viu
putw|5.003007||Viu
pv_display|5.006000|5.003007|p
pv_escape|5.009004|5.003007|p

 view release on metacpan or  search on metacpan

t/sysinfos/ProxySG-4006060000--20090307-165730UTC.sysinfo  view on Meta::CPAN

__Tunnel Work-item Resumed: 0
__Tunnels Resumed: 0
__Tunnels Failed to Resume: 0
Total Number of Tunnel Send-flows: 0
__Total Time Processing Tunnel Send-flows (ms): 0
__Total Time Send-flows Send-blocked (ms): 0
__Max Time Processing Tunnel Send-flows (ms): 0
__Max Time Send-flows Send-blocked (ms): 0
__Avg Time Processing Tunnel Send-flows (ns): 0
__Avg Time Send-flows Send-blocked (ns): 0
Total Number of Tunnel Recv-flows: 0
__Total Time Processing Tunnel Recv-flow (ms): 0
__Total Time Recv-flows Send-blocked (ms): 0
__Max Time Processing Tunnel Recv-flow (ms): 0
__Max Time Recv-flows Send-blocked (ms): 0
__Avg Time Processing Tunnel Recv-flows (ns): 0
__Avg Time Recv-flows Send-blocked (ns): 0
Compression Operations: 0
__Total Time Send-flows Compression-blocked (ms): 0
__Max Time Send-flows Compression-blocked (ms): 0
__Avg Time Send-flows Compression-blocked (ns): 0
__Avg Time Compressing Data (ns): 0
Decompression Operations: 0
__Total Time Recv-flows Decompression-blocked (ms): 0
__Max Time Recv-flows Decompression-blocked (ms): 0
__Avg Time Decompressing Data (ns): 0
__Avg Time Recv-flows Decompression-blocked (ns): 0
Server CCPM Heap Total Blocks: 1
Client CCPM Heap Total Blocks: 1
Secure Server CCPM Heap Total Blocks: 1
Secure Client CCPM Heap Total Blocks: 1
ICPM Heap Total Blocks: 1

 view release on metacpan or  search on metacpan

lib/Bluesky.pm  view on Meta::CPAN

Boolean value (false is default).

=back

An error is returned if the client is blocked by the actor.

=head2 C<getPostThread( ... )>

    $bsky->getPostThread( uri => 'at://bsky.app/app.bsky.feed.post/3l6oveex3ii2l' );

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lib/Bluetooth/Any.pm  view on Meta::CPAN

        log_trace "Using rfkill to check bluetooth status";
        my $out;
        system {capture_stdout=>\$out}, "rfkill", "list", "bluetooth";
        last if $?;
        my $in_bt;
        my $unblocked;
        for (split /^/m, $out) {
            if (/^\d/) {
                if (/bluetooth/i) {
                    $in_bt = 1;
                } else {
                    $in_bt = 0;
                }
                next;
            } else {
                if (/blocked:\s*yes/i) {
                    return [200, "OK", 0, {'func.method'=>'rfkill', 'cmdline.result'=>'Bluetooth is OFF', 'cmdline.exit_code'=>1}];
                } elsif (/blocked:\s*no/i) {
                    $unblocked = 0;
                }
            }
        }

        if (defined $unblocked) {
            return [200, "OK", 1, {'func.method'=>'rfkill', 'cmdline.result'=>'Bluetooth is on', 'cmdline.exit_code'=>0}];
        } else {
            log_warn "Cannot detect 'blocked: no' from 'rfkill list' output, skipping using rfkill";
            last;
        }
    }
    [500, "Failed, no methods succeeded"];
}

 view release on metacpan or  search on metacpan

MANIFEST  view on Meta::CPAN

src/boost/detail/container_fwd.hpp
src/boost/detail/dynamic_bitset.hpp
src/boost/detail/endian.hpp
src/boost/detail/fenv.hpp
src/boost/detail/indirect_traits.hpp
src/boost/detail/interlocked.hpp
src/boost/detail/is_function_ref_tester.hpp
src/boost/detail/is_incrementable.hpp
src/boost/detail/is_xxx.hpp
src/boost/detail/iterator.hpp
src/boost/detail/lcast_precision.hpp

 view release on metacpan or  search on metacpan

MANIFEST  view on Meta::CPAN

include/boost/detail/catch_exceptions.hpp
include/boost/detail/compressed_pair.hpp
include/boost/detail/dynamic_bitset.hpp
include/boost/detail/endian.hpp
include/boost/detail/indirect_traits.hpp
include/boost/detail/interlocked.hpp
include/boost/detail/is_function_ref_tester.hpp
include/boost/detail/is_incrementable.hpp
include/boost/detail/iterator.hpp
include/boost/detail/lightweight_mutex.hpp
include/boost/detail/lightweight_test.hpp

MANIFEST  view on Meta::CPAN

include/boost/numeric/ublas/matrix.hpp
include/boost/numeric/ublas/matrix_expression.hpp
include/boost/numeric/ublas/matrix_proxy.hpp
include/boost/numeric/ublas/matrix_sparse.hpp
include/boost/numeric/ublas/operation.hpp
include/boost/numeric/ublas/operation_blocked.hpp
include/boost/numeric/ublas/operation_sparse.hpp
include/boost/numeric/ublas/storage.hpp
include/boost/numeric/ublas/storage_sparse.hpp
include/boost/numeric/ublas/symmetric.hpp
include/boost/numeric/ublas/traits.hpp

 view release on metacpan or  search on metacpan

lib/Bot/Backbone/SendPolicy/MinimumRepeatInterval.pm  view on Meta::CPAN

=head2 lingering_interval

The L</interval> determines how long the bot must wait before sending a duplicate message text. The lingering interval allows the normal interval to be extended with each new attempt to send the duplicate message text. The extension will occur accord...

For example, suppose you have interval set to 5 seconds and lingering interval set to 20 seconds. The bot tries to send the message "blah" and then tries again 3 seconds later and then again 6 seconds after the original. Both of these followup attemp...

=head2 cache_key

The documentation in this module fudges a little in how this works. It's actually more flexible than it might seem. Normally, this send policy works based upon the actual message text sent by the user. However, in some cases this might not be conveni...

 view release on metacpan or  search on metacpan

lib/Bot/BasicBot/Pluggable/Module/Zippy.pm  view on Meta::CPAN

RHAPSODY in Glue!
SANTA CLAUS comes down a FIRE ESCAPE wearing bright blue LEG WARMERS ... He scrubs the POPE with a mild soap or detergent for 15 minutes, starring JANE FONDA!!
Send your questions to ``ASK ZIPPY'', Box 40474, San Francisco, CA 94140, USA
SHHHH!!  I hear SIX TATTOOED TRUCK-DRIVERS tossing ENGINE BLOCKS into empty OIL DRUMS ...
Should I do my BOBBIE VINTON medley?
Should I get locked in the PRINCICAL'S OFFICE today -- or have a VASECTOMY??
Should I start with the time I SWITCHED personalities with a BEATNIK hair stylist or my failure to refer five TEENAGERS to a good OCULIST? Sign my PETITION.
So this is what it feels like to be potato salad
So, if we convert SUPPLY-SIDE SOYABEAN FUTURES into HIGH-YIELD T-BILL INDICATORS, the PRE-INFLATIONARY risks will DWINDLE to a rate of 2 SHOPPING SPREES per EGGPLANT!!
Someone in DAYTON, Ohio is selling USED CARPETS to a SERBO-CROATIAN
Sometime in 1993 NANCY SINATRA will lead a BLOODLESS COUP on GUAM!!

 view release on metacpan or  search on metacpan

lib/Bot/BasicBot/Pluggable/Module/Log.pm  view on Meta::CPAN

nfs and rotating the log files. In the future there will be a submodule to
use Log::Log4perl or Log::Dispatch.

=item

No file is locked, so there could be a possible problem with multiple
bots writing to the same file. This will also be solved by using one of
the serious logging modules mentioned above.

=back

 view release on metacpan or  search on metacpan

root/css/excite-bike/jquery-ui-1.7.2.custom.css  view on Meta::CPAN

.ui-icon-suitcase { background-position: -112px -96px; }
.ui-icon-comment { background-position: -128px -96px; }
.ui-icon-person { background-position: -144px -96px; }
.ui-icon-print { background-position: -160px -96px; }
.ui-icon-trash { background-position: -176px -96px; }
.ui-icon-locked { background-position: -192px -96px; }
.ui-icon-unlocked { background-position: -208px -96px; }
.ui-icon-bookmark { background-position: -224px -96px; }
.ui-icon-tag { background-position: -240px -96px; }
.ui-icon-home { background-position: 0 -112px; }
.ui-icon-flag { background-position: -16px -112px; }
.ui-icon-calendar { background-position: -32px -112px; }

 view release on metacpan or  search on metacpan

lib/Bot/ChatBots/Auth.pod  view on Meta::CPAN

Two mechanisms are provided: I<blacklisting> and I<whitelisting>. These
two mechanisms can be applied to either I<users> identifiers or to
I<channel> identifiers.

I<Blacklist>s are hash references whose keys mark elements that are
blocked. I<Whitelist>s are hash references whose keys mark elements that
are allowed. Most probably you will just want to use only one of the two,
because:

=over

*

whatever is blacklisted is blocked, even if it is then whitelisted;

*

if you pass any whitelist (even an empty one), everything not contained in
it as a key is automatically blocked.

=back

It can make sense to use one mechanism with users and the other one with
channels though.

 view release on metacpan or  search on metacpan

lib/Bot/Cobalt/DB/Term.pm  view on Meta::CPAN

Open a specified database.

Required prior to specifying commands.

The database is opened to make sure it is valid, then 
unlocked again.

All other operations take place against whatever database was 
last opened via C<open>.

=head2 create

 view release on metacpan or  search on metacpan

lib/Bot/Cobalt/DB.pm  view on Meta::CPAN

not be opened (probably due to lock timeout).

=head3 is_open

Returns a boolean value representing whether or not the DB is currently
open and locked.

=head3 dbclose

B<dbclose> closes and unlocks the database.

 view release on metacpan or  search on metacpan

lib/Bot/Net/Mixin/Bot/IRC.pm  view on Meta::CPAN

=head2 on irc_error

=head2 on irc_socketerr

Handles bot disconnections. If the bot becomes disconnected it will automatically attempt to reconnect until the server returns or lets the bot back. It will attempt to do so in a way that will not cause it to be blocked for flooding.

=cut

on [ qw( irc_disconnected irc_error irc_socketerr ) ] => run {
    # TODO XXX FIXME Add support for notifying the bot that the connection has

 view release on metacpan or  search on metacpan

lib/Bot/Pastebot/Server/Http.pm  view on Meta::CPAN

      if (length $channel) {
        # See if it matches.
        if (is_ignored($heap->{my_isrv}, $channel, $remote_addr)) {
          $error = (
            "<p><b><font size='+1' color='#800000'>" .
            "Your IP address has been blocked from pasting to $channel." .
            "</font></b></p>"
          );
          $channel = "";
        }
      }

 view release on metacpan or  search on metacpan

share/starcraft.trn  view on Meta::CPAN

Go ahead tac-com.
Com-link online.
Channel open.
Systems functional.
Acknowledged HQ.
Nav-com locked.
Confirmed.
Target designated.
Ready to roll out!
Singing the tune of Ride of the Valkyries
I'm about to drop the hammer!

share/starcraft.trn  view on Meta::CPAN

Standin' by.
Reporting in.
Coordinates received.
Attack formation.
Roger.
Vector locked-in.
Battlecruiser operational.
Identify yourself!
Shields up! Weapons online!
Not equipped with shields? well then buckle up!
We are getting WAY behind schedule.

 view release on metacpan or  search on metacpan

lib/pods/Box2D/b2Body.pod  view on Meta::CPAN

=over 4

=item * C<Box2D::b2Shape> C<$shape> - the shape to be cloned.

=item * C<float32> C<$density> - the shape density (set to zero for static bodies). Warning:This function is locked during callbacks.

=back

Returns a C<Box2D::b2Fixture>

lib/pods/Box2D/b2Body.pod  view on Meta::CPAN

Parameters:

=over 4

=item * C<Box2D::b2FixtureDef> C<$def> - the fixture definition. Warning:This function is locked during callbacks.

=back

Returns a C<Box2D::b2Fixture>

lib/pods/Box2D/b2Body.pod  view on Meta::CPAN

Parameters:

=over 4

=item * C<Box2D::b2Fixture> C<$fixture> - the fixture to be removed. Warning:This function is locked during callbacks.

=back

=head2 GetAngle()

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root/static/javascript/jquery.3.3.1.min.js  view on Meta::CPAN

/*! jQuery v3.3.1 | (c) JS Foundation and other contributors | jquery.org/license */
!function(e,t){"use strict";"object"==typeof module&&"object"==typeof module.exports?module.exports=e.document?t(e,!0):function(e){if(!e.document)throw new Error("jQuery requires a window with a document");return t(e)}:t(e)}("undefined"!=typeof windo...

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lib/Brackup/Root.pm  view on Meta::CPAN

=item B<max_composite_chunk_size>

In units of bytes, kB, MB, etc.  The maximum size of a composite
chunk, holding lots of little files.  If this is too big, you'll waste
more space with future iterative backups updating files locked into
this chunk with unchanged chunks.

Recommended, and default value, is 1 MB.

=item B<smart_mp3_chunking>

 view release on metacpan or  search on metacpan

lib/Bread/Board/Dependency.pm  view on Meta::CPAN

        my $self = shift;
        ($self->has_service_path)
            || confess "Could not fetch service without service path";
        $self->fetch($self->service_path);
    },
    handles  => [ 'get', 'is_locked', 'lock', 'unlock' ]
);

__PACKAGE__->meta->make_immutable;

no Moose; 1;

lib/Bread/Board/Dependency.pm  view on Meta::CPAN

Predicate for the L</service_path> attribute.

=head2 C<get>

=head2 C<is_locked>

=head2 C<lock>

=head2 C<unlock>

 view release on metacpan or  search on metacpan

lib/Broadworks/OCIP/Methods.pod  view on Meta::CPAN

Additionally there are generic tagged parameters.

=head3 SystemAuthenticationLockoutExportDataGetRequest

Request to export system wide authentication lockout data to a file. All locked
out device profiles, sip endpoints, and sip trunk groups are returned.

The response is either a C<SuccessResponse> or an C<ErrorResponse>.

Fixed parameters are:-