Algorithm-Cluster-Thresh

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t/cutthresh.t  view on Meta::CPAN

    is (scalar(@$clusters) - 1, $tree->length, "num clusters ($method)");

    # Given a cluster id, what data indexes are in it, i.e. reverse map
    my @clustermap;
    for (my $i = 0; $i < @$clusters; $i++) {
        my $cluster = $clusters->[$i];
        push @{$clustermap[$cluster]}, $i;
    }
    
    # For every pair of clusters, 
    # verify that inter-cluster distance (given $method) doesn't exceed $thresh
    for (my $i = 0; $i < @clustermap - 1; $i++) {
        for (my $j = $i+1; $j < @clustermap; $j++) {
            # Dispatch table to call appropriate metric, i.e. minlinkage when 's'            
            my $dist = $dispatch{$method}->($clustermap[$i],$clustermap[$j]);     
            ok $dist > $thresh, 
                sprintf "%5.2f < %5.2f for clusters %2d and %2d ($method)", 
                    $dist, $thresh, $i, $j;
        }
    }
}



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