App-GeoCancerPrognosticDatasetsRetriever

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data/bladder_cancer_GEO.txt  view on Meta::CPAN

8. The Androgen Receptor Directly Regulates CD44 Expression in Androgen Sensitive Bladder Cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing
Platforms: GPL15207 GPL16791 18 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147940/
Series		Accession: GSE147940	ID: 200147940

9. The Androgen Receptor Directly Regulates CD44 Expression in Androgen Sensitive Bladder Cancer [ChIP-seq]
(Submitter supplied) To study androgen receptor transcriptomic activation in the presence of androgen in bladder cancer cell lines.  A uniquely derived AR expressing clone of the bladder cancer cell line UMUC3 was derived and validated prior to ChIP-...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL16791 12 Samples
FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147939/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622581
Series		Accession: GSE147939	ID: 200147939

10. The Androgen Receptor Directly Regulates CD44 Expression in Androgen Sensitive Bladder Cancer [gene expression]
(Submitter supplied) To study androgen receptor transcriptomic activation in the presence of androgen in bladder cancer cell lines.  A uniquely derived AR expressing clone of the bladder cancer cell line UMUC3 was derived and validated prior to micro...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15207 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147938/
Series		Accession: GSE147938	ID: 200147938

11. Genome-wide map of cohesin positions in RT112 bladder cancer cells
(Submitter supplied) Bladder cancer is one of the most common genitourinary malignancies worldwide. It is a heterogeneous disease at the clinical, pathological, and genetic levels.   In an exome-sequencing study of bladder cancer, we identified genes...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing

data/bladder_cancer_GEO.txt  view on Meta::CPAN

274. Transcriptional profiling of tumor-associated blood vessels in invasive bladder cancer
(Submitter supplied) Tumor-associated blood vessels differ from normal vessels at the morphological and molecular level. Proteins that are only present on tumor vessels may serve as biomarkers and as therapeutic targets for inhibition of angiogenesis...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL5175 10 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41614/
Series		Accession: GSE41614	ID: 200041614

275. Molecular Biomarker Signature for Bladder Cancer Detection
(Submitter supplied) In this study we applied differential gene expression analysis to exfoliated human urothelia obtained from patients of known bladder disease status. Selected targets from the microarray data were validated in an independent set o...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 92 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31189/
Series		Accession: GSE31189	ID: 200031189

276. Transcriptome of normal, paracancerouse and cancerous bladder tissues based on RNA-Seq method
(Submitter supplied) In order to support our research of bladder cancer in human genome, we conducted massively parallel pyrosequencing of mRNAs (RNA-Seq) using normal, paracancerouse and cancerous human bladder tissues. We obtained a total of 30.0 m...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing

data/bladder_cancer_GEO.txt  view on Meta::CPAN

295. Identification of target genes of tumor suppressor microRNAs in human cancer
(Submitter supplied) To identify target genes of tumor suppressive microRNAs in human cancer, several cell lines (bladder cancer, prostate cancer, renal cell carcinoma, and head and neck squamous cell carcinoma) were subjected to Agilent whole genome...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platforms: GPL4133 GPL10332 13 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE24nnn/GSE24782/
Series		Accession: GSE24782	ID: 200024782

296. Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer  
(Submitter supplied) Urothelial carcinoma of the bladder is characterized by significant variability in clinical outcomes depending on stage and grade. The addition of molecular information may improve our understanding of such heterogeneity and enha...
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS4456 Platform: GPL570 93 Samples
FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31684/
Series		Accession: GSE31684	ID: 200031684

297. High-risk bladder cancer
Analysis of bladder cancer specimens from a high-risk population of patients who underwent radical cystectomy (Memorial Sloan-Kettering Cancer Center cohort). Results provide insight into the prediction of survival in high-risk urothelial carcinoma o...
Organism:	Homo sapiens
Type:		Expression profiling by array, transformed count, 2 disease state, 5 specimen sets

data/bladder_cancer_GEO.txt  view on Meta::CPAN

313. Discovery of microRNAs and other small RNAs in solid human tumors
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array; Non-coding RNA profiling by high throughput sequencing
Platforms: GPL10067 GPL9186 40 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20418/
Series		Accession: GSE20418	ID: 200020418

314. Discovery of microRNAs and other small RNAs in solid human tumors: sequencing
(Submitter supplied) MicroRNAs (miRNAs) are ~22 nucleotide-long, non-coding RNAs that regulate gene silencing. It is known that many human miRNAs are deregulated in numerous types of tumors. Here we report the sequencing of small RNAs from 23 breast,...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by high throughput sequencing
Platform: GPL9186 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20417/
Series		Accession: GSE20417	ID: 200020417

315. Predective Value of Prognosis-Related Gene Expression Study in Primary Bladder Cancer
(Submitter supplied) This study aimed to identify the genetic signatures associated with disease prognosis in bladder cancer. We used 165 primary bladder cancer samples, 23 recurrent non-muscle invasive tumor tissues, 58 normal looking bladder mucosa...
Organism:	Homo sapiens
Type:		Expression profiling by array

data/bladder_cancer_GEO.txt  view on Meta::CPAN

329. Analysis of clinical bladder cancer classification according to microarray expression profiles
(Submitter supplied) Using Affymetrix microarray technology we analyzed the gene expression profiles of the most important pathological categories of bladder cancer in order to detect potential marker genes. Applying an unsupervised cluster algorithm...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 12 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE7nnn/GSE7476/
Series		Accession: GSE7476	ID: 200007476

330. Gene expression signatures predict outcome in non-muscle invasive bladder carcinoma - a multi-center validation study
(Submitter supplied) Background Clinically useful molecular markers predicting the clinical course of patients diagnosed with non-muscle invasive bladder cancer are needed to improve treatment outcome. Methods We used custom designed oligonucleotide ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4060 808 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE5nnn/GSE5479/
Series		Accession: GSE5479	ID: 200005479

331. Molecular Features of Hormone-Refractory Prostate Cancer Cells by Genome-wide Gene-expression Profiles
(Submitter supplied) To characterize the molecular features of clinical (Hormone-Refractory Prostate Cancers) HRPCs, we generated the precise gene-expression profiles of 25 clinical HRPCs and 10 hormone-sensitive prostate cancers (HSPCs) by genome-wi...
Organism:	Homo sapiens
Type:		Expression profiling by array