AIIA-GMT
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# http://module-build.sourceforge.net/META-spec.html
#XXXXXXX This is a prototype!!! It will change in the future!!! XXXXX#
name: AIIA-GMT
version: 0.05
version_from: lib/AIIA/GMT.pm
installdirs: site
requires:
Frontier::Client: 0
distribution_type: module
generated_by: ExtUtils::MakeMaker version 6.30
=====================
AIIA::GMT is a XML-RPC client of a web-service server, AIIA gene mention tagger, which provides the service to recognize named entities in the biomedical articles.
AIIA gene mention tagger, developed by Adaptive Internet Intelligent Agents Lab, Institute of Information Science, Academia Sinica, Taiwan and I-Fang Chung's Lab, Institute of Bioinformatics, National Yang-Ming University, Taiwan, is a named entity r...
This module is developed to help those who want to use this remote service with XML-RPC, rather than with its web interface. Finally, this module and service is released under a GPLv3 License. You're free to use it for both academic or personal use.
INSTALLATION
To install this module type the following:
perl Makefile.PL
make
make test
make install
DEPENDENCIES
This module requires these other modules and libraries:
av_len|||
av_make|||
av_pop|||
av_push|||
av_reify|||
av_shift|||
av_store|||
av_undef|||
av_unshift|||
ax|||n
bad_type|||
bind_match|||
block_end|||
block_gimme||5.004000|
block_start|||
boolSV|5.004000||p
boot_core_PerlIO|||
boot_core_UNIVERSAL|||
boot_core_xsutils|||
bytes_from_utf8||5.007001|
bytes_to_utf8||5.006001|
newSVrv|||
newSVsv|||
newSVuv|5.006000||p
newSV|||
newUNOP|||
newWHILEOP||5.009003|
newXSproto||5.006000|
newXS||5.006000|
new_collate||5.006000|
new_constant|||
new_ctype||5.006000|
new_he|||
new_logop|||
new_numeric||5.006000|
new_stackinfo||5.005000|
new_version||5.009000|
next_symbol|||
nextargv|||
nextchar|||
ninstr|||
no_bareword_allowed|||
pTHX|5.006000||p
pack_cat||5.007003|
pack_rec|||
package|||
packlist||5.008001|
pad_add_anon|||
pad_add_name|||
pad_alloc|||
pad_block_start|||
pad_check_dup|||
pad_compname_type|||
pad_findlex|||
pad_findmy|||
pad_fixup_inner_anons|||
pad_free|||
pad_leavemy|||
pad_new|||
pad_push|||
pad_reset|||
pad_setsv|||
pad_sv|||
save_svref|||
save_threadsv||5.005000|
save_vptr||5.006000|
savepvn|||
savepv|||
savesharedpv||5.007003|
savestack_grow_cnt||5.008001|
savestack_grow|||
savesvpv||5.009002|
sawparens|||
scalar_mod_type|||
scalarboolean|||
scalarkids|||
scalarseq|||
scalarvoid|||
scalar|||
scan_bin||5.006000|
scan_commit|||
scan_const|||
scan_formline|||
scan_heredoc|||
sv_pvbyte||5.006000|
sv_pvn_force_flags||5.007002|
sv_pvn_force|||p
sv_pvn_nomg|5.007003||p
sv_pvn|5.006000||p
sv_pvutf8n_force||5.006000|
sv_pvutf8n||5.006000|
sv_pvutf8||5.006000|
sv_pv||5.006000|
sv_recode_to_utf8||5.007003|
sv_reftype|||
sv_release_COW|||
sv_release_IVX|||
sv_replace|||
sv_report_used|||
sv_reset|||
sv_rvweaken||5.006000|
sv_setiv_mg|5.006000||p
sv_setiv|||
sv_setnv_mg|5.006000||p
sv_setnv|||
sv_utf8_encode||5.006000|
sv_utf8_upgrade_flags||5.007002|
sv_utf8_upgrade||5.007001|
sv_uv|5.006000||p
sv_vcatpvf_mg|5.006000|5.004000|p
sv_vcatpvfn||5.004000|
sv_vcatpvf|5.006000|5.004000|p
sv_vsetpvf_mg|5.006000|5.004000|p
sv_vsetpvfn||5.004000|
sv_vsetpvf|5.006000|5.004000|p
svtype|||
swallow_bom|||
swash_fetch||5.007002|
swash_init||5.006000|
sys_intern_clear|||
sys_intern_dup|||
sys_intern_init|||
taint_env|||
taint_proper|||
tmps_grow||5.006000|
toLOWER|||
$file{changes} += ($c =~ s/^$HS*#$HS*define$HS+NEED_${func}_GLOBAL\b.*$LF//mg);
}
}
$file{needs_inc_ppport} = keys %{$file{uses}};
if ($file{needs_inc_ppport}) {
my $pp = '';
for $func (sort keys %{$file{needs}}) {
my $type = $file{needs}{$func};
next if $type eq 'extern';
my $suffix = $type eq 'global' ? '_GLOBAL' : '';
unless (exists $file{"needed_$type"}{$func}) {
if ($type eq 'global') {
diag("Files [@{$global{needs}{$func}}] need $func, adding global request");
}
else {
diag("File needs $func, adding static request");
}
$pp .= "#define NEED_$func$suffix\n";
}
}
if ($pp && ($c =~ s/^(?=$HS*#$HS*define$HS+NEED_\w+)/$pp/m)) {
#ifndef dNOOP
# define dNOOP extern int Perl___notused PERL_UNUSED_DECL
#endif
#ifndef NVTYPE
# if defined(USE_LONG_DOUBLE) && defined(HAS_LONG_DOUBLE)
# define NVTYPE long double
# else
# define NVTYPE double
# endif
typedef NVTYPE NV;
#endif
#ifndef INT2PTR
# if (IVSIZE == PTRSIZE) && (UVSIZE == PTRSIZE)
# define PTRV UV
# define INT2PTR(any,d) (any)(d)
# else
# if PTRSIZE == LONGSIZE
# define PTRV unsigned long
#endif
/*
* Boilerplate macros for initializing and accessing interpreter-local
* data from C. All statics in extensions should be reworked to use
* this, if you want to make the extension thread-safe. See ext/re/re.xs
* for an example of the use of these macros.
*
* Code that uses these macros is responsible for the following:
* 1. #define MY_CXT_KEY to a unique string, e.g. "DynaLoader_guts"
* 2. Declare a typedef named my_cxt_t that is a structure that contains
* all the data that needs to be interpreter-local.
* 3. Use the START_MY_CXT macro after the declaration of my_cxt_t.
* 4. Use the MY_CXT_INIT macro such that it is called exactly once
* (typically put in the BOOT: section).
* 5. Use the members of the my_cxt_t structure everywhere as
* MY_CXT.member.
* 6. Use the dMY_CXT macro (a declaration) in all the functions that
* access MY_CXT.
*/
#define Perl_grok_number DPPP_(my_grok_number)
#if defined(NEED_grok_number) || defined(NEED_grok_number_GLOBAL)
int
DPPP_(my_grok_number)(pTHX_ const char *pv, STRLEN len, UV *valuep)
{
const char *s = pv;
const char *send = pv + len;
const UV max_div_10 = UV_MAX / 10;
const char max_mod_10 = UV_MAX % 10;
int numtype = 0;
int sawinf = 0;
int sawnan = 0;
while (s < send && isSPACE(*s))
s++;
if (s == send) {
return 0;
} else if (*s == '-') {
s++;
numtype = IS_NUMBER_NEG;
}
else if (*s == '+')
s++;
if (s == send)
return 0;
/* next must be digit or the radix separator or beginning of infinity */
if (isDIGIT(*s)) {
/* UVs are at least 32 bits, so the first 9 decimal digits cannot
break;
}
if (digit >= 0 && digit <= 9
&& (s < send)) {
/* value overflowed.
skip the remaining digits, don't
worry about setting *valuep. */
do {
s++;
} while (s < send && isDIGIT(*s));
numtype |=
IS_NUMBER_GREATER_THAN_UV_MAX;
goto skip_value;
}
}
}
}
}
}
}
}
}
}
}
}
}
}
}
}
}
}
numtype |= IS_NUMBER_IN_UV;
if (valuep)
*valuep = value;
skip_value:
if (GROK_NUMERIC_RADIX(&s, send)) {
numtype |= IS_NUMBER_NOT_INT;
while (s < send && isDIGIT(*s)) /* optional digits after the radix */
s++;
}
}
else if (GROK_NUMERIC_RADIX(&s, send)) {
numtype |= IS_NUMBER_NOT_INT | IS_NUMBER_IN_UV; /* valuep assigned below */
/* no digits before the radix means we need digits after it */
if (s < send && isDIGIT(*s)) {
do {
s++;
} while (s < send && isDIGIT(*s));
if (valuep) {
/* integer approximation is valid - it's 0. */
*valuep = 0;
}
}
} else if (*s == 'N' || *s == 'n') {
/* XXX TODO: There are signaling NaNs and quiet NaNs. */
s++; if (s == send || (*s != 'A' && *s != 'a')) return 0;
s++; if (s == send || (*s != 'N' && *s != 'n')) return 0;
s++;
sawnan = 1;
} else
return 0;
if (sawinf) {
numtype &= IS_NUMBER_NEG; /* Keep track of sign */
numtype |= IS_NUMBER_INFINITY | IS_NUMBER_NOT_INT;
} else if (sawnan) {
numtype &= IS_NUMBER_NEG; /* Keep track of sign */
numtype |= IS_NUMBER_NAN | IS_NUMBER_NOT_INT;
} else if (s < send) {
/* we can have an optional exponent part */
if (*s == 'e' || *s == 'E') {
/* The only flag we keep is sign. Blow away any "it's UV" */
numtype &= IS_NUMBER_NEG;
numtype |= IS_NUMBER_NOT_INT;
s++;
if (s < send && (*s == '-' || *s == '+'))
s++;
if (s < send && isDIGIT(*s)) {
do {
s++;
} while (s < send && isDIGIT(*s));
}
else
return 0;
}
}
while (s < send && isSPACE(*s))
s++;
if (s >= send)
return numtype;
if (len == 10 && memEQ(pv, "0 but true", 10)) {
if (valuep)
*valuep = 0;
return IS_NUMBER_IN_UV;
}
return 0;
}
#endif
#endif
( run in 0.586 second using v1.01-cache-2.11-cpan-df04353d9ac )