Bio-MUST-Apps-HmmCleaner

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test/GNTPAN12210.ali  view on Meta::CPAN

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>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCGHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Anolis carolinensis@ENSACAP00000017686
LSM********RSGIHAPTPPRRVLGIMAEPEVSLQTSARTPQAAASSAATASSVTAPPA*******SSGGGSGGSSST*******SSSDPVRPGLSQQQ**RASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPN*****P*PTAPRMDLQQTVTNLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Protopterus annectens@comp246593_c0_seq1
**********************************************************************************************************************************************************************************************************************************************************...
>Protopterus annectens@comp301579_c0_seq1
******************************************MADSGQASQPRLLQSQPSGIVPSSGSTTGSSTTSGTG******SGSSDPARPGLSQQQ**RASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPN*****P*ATAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSDDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Latimeria chalumnae@ENSLACP00000012334
************RPLQNRSNFIEPADSKQSSLLPGSLSAVAMAEPVQQASQPR*****AGGSSLNNGPNPGPSGGAGS*******SGGSDPARPGLSQQQ**RASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PTAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKSILQMSRPVVEGSL...
>Danio rerio@ENSDARP00000011795
MAD****************************************PAAQSSAQPRLQQAQSSGPTGSNSNPGA***************GSSDPARPGLSQQQ**WSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPN*****P*PTAARMELQQQAASLTETCRSCGHSLA*EHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Oreochromis niloticus@ENSONIP00000001395
MSD*****************************************PAAQALQPRLLQAQSAGSASSSTTTTAGSGS***********GNSDPVRPGLSQQQ**RASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PSATRIDLQQQAASLSEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Homo sapiens@ENSP00000263754
*************************MSEAGGAGPGGCGAGAGAGAGPGALPPQPAALPPAPPQGSPC**AAAAGGSGACGPATAVAAAGTAEGPGGGGSA**RIAVKKAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Mus musculus@ENSMUSP00000000724
*************************MAEAGGAG********************SPALPPAPPHGSPRTLATAAGSSASCGPATAVAAAGTAEGPGGGGSA**RIAVKKAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685

test/GNTPAN12210.ali  view on Meta::CPAN

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>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Taeniopygia guttata@ENSTGUP00000003370
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRAELQQAAASLAEPCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Xenopus tropicalis@ENSXETP00000030583
*************************MVCVAGSG************************SSALPQGSPAIVASAASGAARG******AESPSAAGGGGVGSAPLRIAAKKGQLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPN*****PPPTPPKMDLQQTVVSLAEPCRSCGHTLA*AHVSH*LENVSEEEMNRLLGIVLDIEYLFTCV***HKEEDADTKQVY*FCLFKLLRKCILQMVKPAVEGSL...
>Latimeria chalumnae@ENSLACP00000007242
*************************MSE*****************************GGGVQQGSPAP***********GSAGSVPAGGADGSGSAAGSA**RIAMKKAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPN*****PPPTPPRVDLQQTVGSLTEPCRSCSHTLA*DHVSH*LENVLEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPAVEGSL...
>Danio rerio@ENSDARP00000085190
*************************MSE*****************************STGIPQGSPAVGAAGSAPAAPG*******VGGTECSGAAVGSA**RIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAE*QPTAVSLMEPCRSCSHALG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCV***HKEEDPDTKQVY*FSLFKLLRKCILQMGRPVVE*AL...
>Oreochromis niloticus@ENSONIP00000003026
*************************MAD*****************************SAGIQQGSPAIGAAGLVPAAPG*******AGGTEGSGAARGSA**RIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQN*****PPPTPPQTEQQSNAVNLQEPCRSCSHTLG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCI***HKEEDADTKQVY*FSLFKLLRKSILQMGKPMLEAQ*...

test/GNTPAN12210_hmm.ali  view on Meta::CPAN

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>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCGHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Anolis carolinensis@ENSACAP00000017686
                                                                                         DPVRPGLSQQQ**RASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPN*****P*PTAPRMDLQQTVTNLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Protopterus annectens@comp246593_c0_seq1
**********************************************************************************************************************************************************************************************************************************************************...
>Protopterus annectens@comp301579_c0_seq1
                                                                                         DPARPGLSQQQ**RASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPN*****P*ATAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSDDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Latimeria chalumnae@ENSLACP00000012334
                                                                                       GSDPARPGLSQQQ**RASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PTAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKSILQMSRPVVEGSL...
>Danio rerio@ENSDARP00000011795
                                                                                         DPARPGLSQQQ**WSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPN*****P*PTAARMELQQQAASLTETCRSCGHSLA*EHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Oreochromis niloticus@ENSONIP00000001395
                                                                      AGSGS***********GNSDPVRPGLSQQQ**RASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PSATRIDLQQQAASLSEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Homo sapiens@ENSP00000263754
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Mus musculus@ENSMUSP00000000724
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685

test/GNTPAN12210_hmm.ali  view on Meta::CPAN

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>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Taeniopygia guttata@ENSTGUP00000003370
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRAELQQAAASLAEPCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Xenopus tropicalis@ENSXETP00000030583
                                                                                                             QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPN*****PPPTPPKMDLQQTVVSLAEPCRSCGHTLA*AHVSH*LENVSEEEMNRLLGIVLDIEYLFTCV***HKEEDADTKQVY*FCLFKLLRKCILQMVKPAVEGSL...
>Latimeria chalumnae@ENSLACP00000007242
                                                                                                           KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPN*****PPPTPPRVDLQQTVGSLTEPCRSCSHTLA*DHVSH*LENVLEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPAVEGSL...
>Danio rerio@ENSDARP00000085190
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAE*QPTAVSLMEPCRSCSHALG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCV***HKEEDPDTKQVY*FSLFKLLRKCILQMGRPVVE*AL...
>Oreochromis niloticus@ENSONIP00000003026
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQN*****PPPTPPQTEQQSNAVNLQEPCRSCSHTLG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCI***HKEEDADTKQVY*FSLFKLLRKSILQMGKPMLEAQ*...

test/GNTPAN12210_hmm.log  view on Meta::CPAN

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Taeniopygia guttata@ENSTGUP00000002617
        698-730
Anolis carolinensis@ENSACAP00000017686
        1-89
        443-529
Protopterus annectens@comp246593_c0_seq1
Protopterus annectens@comp301579_c0_seq1
        43-89
        438-495
        577-732
Latimeria chalumnae@ENSLACP00000012334
        13-87
        451-473
        693-729
        779-818
Danio rerio@ENSDARP00000011795
        1-89
        424-529
Oreochromis niloticus@ENSONIP00000001395
        1-70
Homo sapiens@ENSP00000263754

test/GNTPAN12210_hmm.log  view on Meta::CPAN

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Anolis carolinensis@ENSACAP00000000014
        425-446
Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
Meleagris gallopavo@ENSMGAP00000011414
Taeniopygia guttata@ENSTGUP00000003370
        425-446
Xenopus tropicalis@ENSXETP00000030583
        26-109
        412-446
Latimeria chalumnae@ENSLACP00000007242
        26-107
        425-446
Danio rerio@ENSDARP00000085190
        26-107
        408-455
Oreochromis niloticus@ENSONIP00000003026
        26-107
        412-456

test/GNTPAN12210_hmm.score  view on Meta::CPAN

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                                                                                                           DPVRPGLSQQQRASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPNPPTAPRMDLQQTVTNLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVE...
 
Protopterus annectens@comp246593_c0_seq1        RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
                                                +ilmwlvglqnvfshqlprmpkeyitrlvfdpkhktlalikdgrviggicfrmfptqgfteivfcavtsneqvkgygthlmnhlkeyhikhnil+fltyadeyaigyfkkqgfskdikvpksrylgyikdyegatlmecelnpripytelshiikkqkeiikklierkq qirk ypgl cfkegvrqipiesipgiretgwkp+gkek...
                                                RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
 
Protopterus annectens@comp301579_c0_seq1        MADSGQASQPRLLQSQPSGIVPSSGSTTGSSTTSGTGSGSSDPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
                                                                                  g g +++dparpglsqqqrasqrk q ra+prakkleklgvfsackanesckcngwknpnp taprmdlqqpaaslsepcrsc+haladhvshlenvs +einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqyk...
                                                                                         DPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
 
Latimeria chalumnae@ENSLACP00000012334  RPLQNRSNFIEPADSKQSSLLPGSLSAVAMAEPVQQASQPRAGGSSLNNGPNPGPSGGAGSSGGSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
                                                                                                g     +g+dparpglsqqqrasqrk+qvra+prakkleklgvfsackan++ckcngwknpnpptaprmdlqqpaaslsepcrsc+haladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrk+ilqm++pvvegs...
                                                                                                       GSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
 
Danio rerio@ENSDARP00000011795  MADPAAQSSAQPRLQQAQSSGPTGSNSNPGAGSSDPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
                                                               +++dparpglsqqq+ sq+kaqvr++prakkleklgvfs+ckan++ckcngwknpnppta rm+lqq+aasl+e crsc+h la hvshlenvseeeinrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqmgkpvvegslgsppfekpnieqgvlnfvqykfshl+pkerqtm+elsk...
                                                                  DPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
 
Oreochromis niloticus@ENSONIP00000001395        MSDPAAQALQPRLLQAQSAGSASSSTTTTAGSGSGNSDPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...
                                                                            +agsg +++dp rpglsqqqrasq+kaqvra+prakkleklgvfsackan++ckcngwknpnpp a r dlqq+aaslsepcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqykfshl...
                                                                             AGSGSGNSDPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...

test/GNTPAN12210_hmm.score  view on Meta::CPAN

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                                        QAEESCKCNGWKNPNPPPTPPRADLQQAVVSLTEPCRSCSHTLAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVIEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Taeniopygia guttata@ENSTGUP00000003370  QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
                                        +a+esckcngwknpnp pt+pr++lqq aasl epcrscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgrtll...
                                        QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Xenopus tropicalis@ENSXETP00000030583   MVCVAGSGSSALPQGSPAIVASAASGAARGAESPSAAGGGGVGSAPLRIAAKKGQLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
                                                                               g+ +++  r++ +k q+r++prakkleklgv+sacka e+ckcngwknpnp pt+p mdlqq+++sl epcrsc+h+la+hvshlenvseee+nrllg+v+d e+lf++vhkeed+dtkqvyf+lfkllrkcilqm kp vegslgsppfekp+ieqgv+nfvqykfshlp+k...
                                                                                              QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
 
Latimeria chalumnae@ENSLACP00000007242  MSEGGGVQQGSPAPGSAGSVPAGGADGSGSAAGSARIAMKKAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
                                                                   ++   +++r++++kaq+ra+prakkleklgv+sacka+esckcngwk+pnp pt+pr dlqq++ sl+epcrscsh+ladhvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfvqykfshlppkerqt+vel+km...
                                                                                KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
 
Danio rerio@ENSDARP00000085190  MSESTGIPQGSPAVGAAGSAPAAPGVGGTECSGAAVGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
                                                          gg+ +++   +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk++n     p pt+pr++q +a+sl+epcrscshal dhv+hlenvseee+nrllg+v+dve+l+++vhkeed dtkqvyf lfkllrkcilqmg+pvve l+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmf...
                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
 
Oreochromis niloticus@ENSONIP00000003026        MADSAGIQQGSPAIGAAGLVPAAPGAGGTEGSGAARGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...
                                                                          gg+  ++   +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk++np pt+p+ ++q +a++l+epcrscsh+l dhv+hlenvseee+nrllg+v+dve+l+++ hkeed+dtkqvyf lfkllrk+ilqmgkp+ e  +sppfekp+ieqgv+nfvqykfshlp+kerqt++...
                                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...

test/GNTPAN12210_hmm_X.ali  view on Meta::CPAN

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>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCGHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Anolis carolinensis@ENSACAP00000017686
                                                                                         DPVRPGLSQQQ**RASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPN*****P*PTAPRMDLQQTVTNLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Protopterus annectens@comp246593_c0_seq1
**********************************************************************************************************************************************************************************************************************************************************...
>Protopterus annectens@comp301579_c0_seq1
                                                                                         DPARPGLSQQQ**RASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPN*****P*ATAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSDDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Latimeria chalumnae@ENSLACP00000012334
                                                                                       GSDPARPGLSQQQ**RASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PTAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKSILQMSRPVVEGSL...
>Danio rerio@ENSDARP00000011795
                                                                                         DPARPGLSQQQ**WSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPN*****P*PTAARMELQQQAASLTETCRSCGHSLA*EHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Oreochromis niloticus@ENSONIP00000001395
                                                                      AGSGS***********GNSDPVRPGLSQQQ**RASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PSATRIDLQQQAASLSEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Homo sapiens@ENSP00000263754
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Mus musculus@ENSMUSP00000000724
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685

test/GNTPAN12210_hmm_X.ali  view on Meta::CPAN

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>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Taeniopygia guttata@ENSTGUP00000003370
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRAELQQAAASLAEPCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Xenopus tropicalis@ENSXETP00000030583
                                                                                                             QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPN*****PPPTPPKMDLQQTVVSLAEPCRSCGHTLA*AHVSH*LENVSEEEMNRLLGIVLDIEYLFTCV***HKEEDADTKQVY*FCLFKLLRKCILQMVKPAVEGSL...
>Latimeria chalumnae@ENSLACP00000007242
                                                                                                           KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPN*****PPPTPPRVDLQQTVGSLTEPCRSCSHTLA*DHVSH*LENVLEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPAVEGSL...
>Danio rerio@ENSDARP00000085190
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAE*QPTAVSLMEPCRSCSHALG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCV***HKEEDPDTKQVY*FSLFKLLRKCILQMGRPVVE*AL...
>Oreochromis niloticus@ENSONIP00000003026
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQN*****PPPTPPQTEQQSNAVNLQEPCRSCSHTLG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCI***HKEEDADTKQVY*FSLFKLLRKSILQMGKPMLEAQ*...

test/GNTPAN12210_hmm_X.log  view on Meta::CPAN

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Taeniopygia guttata@ENSTGUP00000002617
        698-730
Anolis carolinensis@ENSACAP00000017686
        1-89
        443-529
Protopterus annectens@comp246593_c0_seq1
Protopterus annectens@comp301579_c0_seq1
        43-89
        438-495
        577-732
Latimeria chalumnae@ENSLACP00000012334
        13-87
        451-473
        693-729
        779-818
Danio rerio@ENSDARP00000011795
        1-89
        424-529
Oreochromis niloticus@ENSONIP00000001395
        1-70
Homo sapiens@ENSP00000263754

test/GNTPAN12210_hmm_X.log  view on Meta::CPAN

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Anolis carolinensis@ENSACAP00000000014
        425-446
Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
Meleagris gallopavo@ENSMGAP00000011414
Taeniopygia guttata@ENSTGUP00000003370
        425-446
Xenopus tropicalis@ENSXETP00000030583
        26-109
        412-446
Latimeria chalumnae@ENSLACP00000007242
        26-107
        425-446
Danio rerio@ENSDARP00000085190
        26-107
        408-455
Oreochromis niloticus@ENSONIP00000003026
        26-107
        412-456

test/GNTPAN12210_hmm_X.score  view on Meta::CPAN

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                                                                                                           DPVRPGLSQQQRASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPNPPTAPRMDLQQTVTNLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVE...
 
Protopterus annectens@comp246593_c0_seq1        RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
                                                +ilmwlvglqnvfshqlprmpkeyitrlvfdpkhktlalikdgrviggicfrmfptqgfteivfcavtsneqvkgygthlmnhlkeyhikhnil+fltyadeyaigyfkkqgfskdikvpksrylgyikdyegatlmecelnpripytelshiikkqkeiikklierkq qirk ypgl cfkegvrqipiesipgiretgwkp+gkek...
                                                RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
 
Protopterus annectens@comp301579_c0_seq1        MADSGQASQPRLLQSQPSGIVPSSGSTTGSSTTSGTGSGSSDPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
                                                                                  g g +++dparpglsqqqrasqrk q ra+prakkleklgvfsackanesckcngwknpnp taprmdlqqpaaslsepcrsc+haladhvshlenvs +einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqyk...
                                                                                         DPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
 
Latimeria chalumnae@ENSLACP00000012334  RPLQNRSNFIEPADSKQSSLLPGSLSAVAMAEPVQQASQPRAGGSSLNNGPNPGPSGGAGSSGGSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
                                                                                                g     +g+dparpglsqqqrasqrk+qvra+prakkleklgvfsackan++ckcngwknpnpptaprmdlqqpaaslsepcrsc+haladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrk+ilqm++pvvegs...
                                                                                                       GSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
 
Danio rerio@ENSDARP00000011795  MADPAAQSSAQPRLQQAQSSGPTGSNSNPGAGSSDPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
                                                               +++dparpglsqqq+ sq+kaqvr++prakkleklgvfs+ckan++ckcngwknpnppta rm+lqq+aasl+e crsc+h la hvshlenvseeeinrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqmgkpvvegslgsppfekpnieqgvlnfvqykfshl+pkerqtm+elsk...
                                                                  DPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
 
Oreochromis niloticus@ENSONIP00000001395        MSDPAAQALQPRLLQAQSAGSASSSTTTTAGSGSGNSDPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...
                                                                            +agsg +++dp rpglsqqqrasq+kaqvra+prakkleklgvfsackan++ckcngwknpnpp a r dlqq+aaslsepcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqykfshl...
                                                                             AGSGSGNSDPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...

test/GNTPAN12210_hmm_X.score  view on Meta::CPAN

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                                        QAEESCKCNGWKNPNPPPTPPRADLQQAVVSLTEPCRSCSHTLAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVIEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Taeniopygia guttata@ENSTGUP00000003370  QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
                                        +a+esckcngwknpnp pt+pr++lqq aasl epcrscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgrtll...
                                        QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Xenopus tropicalis@ENSXETP00000030583   MVCVAGSGSSALPQGSPAIVASAASGAARGAESPSAAGGGGVGSAPLRIAAKKGQLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
                                                                               g+ +++  r++ +k q+r++prakkleklgv+sacka e+ckcngwknpnp pt+p mdlqq+++sl epcrsc+h+la+hvshlenvseee+nrllg+v+d e+lf++vhkeed+dtkqvyf+lfkllrkcilqm kp vegslgsppfekp+ieqgv+nfvqykfshlp+k...
                                                                                              QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
 
Latimeria chalumnae@ENSLACP00000007242  MSEGGGVQQGSPAPGSAGSVPAGGADGSGSAAGSARIAMKKAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
                                                                   ++   +++r++++kaq+ra+prakkleklgv+sacka+esckcngwk+pnp pt+pr dlqq++ sl+epcrscsh+ladhvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfvqykfshlppkerqt+vel+km...
                                                                                KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
 
Danio rerio@ENSDARP00000085190  MSESTGIPQGSPAVGAAGSAPAAPGVGGTECSGAAVGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
                                                          gg+ +++   +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk++n     p pt+pr++q +a+sl+epcrscshal dhv+hlenvseee+nrllg+v+dve+l+++vhkeed dtkqvyf lfkllrkcilqmg+pvve l+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmf...
                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
 
Oreochromis niloticus@ENSONIP00000003026        MADSAGIQQGSPAIGAAGLVPAAPGAGGTEGSGAARGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...
                                                                          gg+  ++   +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk++np pt+p+ ++q +a++l+epcrscsh+l dhv+hlenvseee+nrllg+v+dve+l+++ hkeed+dtkqvyf lfkllrk+ilqmgkp+ e  +sppfekp+ieqgv+nfvqykfshlp+kerqt++...
                                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...

test/GNTPAN12210_hmm_changeCost.ali  view on Meta::CPAN

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>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCGHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Anolis carolinensis@ENSACAP00000017686
                                                                                            RPGLSQQQ**RASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPN*****P*PTAPRMDLQQTVTNLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Protopterus annectens@comp246593_c0_seq1
**********************************************************************************************************************************************************************************************************************************************************...
>Protopterus annectens@comp301579_c0_seq1
                                                                                         DPARPGLSQQQ**RASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPN*****P*ATAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSDDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Latimeria chalumnae@ENSLACP00000012334
                                                                                       GSDPARPGLSQQQ**RASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PTAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKSILQMSRPVVEGSL...
>Danio rerio@ENSDARP00000011795
                                                                                         DPARPGLSQQQ**WSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPN*****P*PTAARMELQQQAASLTETCRSCGHSLA*EHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Oreochromis niloticus@ENSONIP00000001395
                                                                      AGSGS***********GNSDPVRPGLSQQQ**RASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PSATRIDLQQQAASLSEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Homo sapiens@ENSP00000263754
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Mus musculus@ENSMUSP00000000724
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685

test/GNTPAN12210_hmm_changeCost.ali  view on Meta::CPAN

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>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Taeniopygia guttata@ENSTGUP00000003370
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRAELQQAAASLAEPCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Xenopus tropicalis@ENSXETP00000030583
                                                                                                             QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPN*****PPPTPPKMDLQQTVVSLAEPCRSCGHTLA*AHVSH*LENVSEEEMNRLLGIVLDIEYLFTCV***HKEEDADTKQVY*FCLFKLLRKCILQMVKPAVEGSL...
>Latimeria chalumnae@ENSLACP00000007242
                                                                                                           KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPN*****PPPTPPRVDLQQTVGSLTEPCRSCSHTLA*DHVSH*LENVLEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPAVEGSL...
>Danio rerio@ENSDARP00000085190
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWK          PTPPRAE*QPTAVSLMEPCRSCSHALG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCV***HKEEDPDTKQVY*FSLFKLLRKCILQMGRPVVE*AL...
>Oreochromis niloticus@ENSONIP00000003026
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQN*****PPPTPPQTEQQSNAVNLQEPCRSCSHTLG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCI***HKEEDADTKQVY*FSLFKLLRKSILQMGKPMLEAQ*...

test/GNTPAN12210_hmm_changeCost.log  view on Meta::CPAN

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        451-531
        691-730
Anolis carolinensis@ENSACAP00000017686
        1-92
        443-529
Protopterus annectens@comp246593_c0_seq1
Protopterus annectens@comp301579_c0_seq1
        43-89
        424-473
        577-732
Latimeria chalumnae@ENSLACP00000012334
        13-87
        451-473
        693-729
        779-818
Danio rerio@ENSDARP00000011795
        1-89
        424-529
Oreochromis niloticus@ENSONIP00000001395
        1-70
Homo sapiens@ENSP00000263754

test/GNTPAN12210_hmm_changeCost.log  view on Meta::CPAN

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Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
        425-433
Meleagris gallopavo@ENSMGAP00000011414
        425-433
Taeniopygia guttata@ENSTGUP00000003370
        425-446
Xenopus tropicalis@ENSXETP00000030583
        26-109
        408-541
Latimeria chalumnae@ENSLACP00000007242
        26-107
        412-446
Danio rerio@ENSDARP00000085190
        26-107
        142-151
        408-455
Oreochromis niloticus@ENSONIP00000003026
        26-107
        412-465

test/GNTPAN12210_hmm_changeCost.score  view on Meta::CPAN

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                                                                                                              RPGLSQQQRASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPNPPTAPRMDLQQTVTNLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVE...
 
Protopterus annectens@comp246593_c0_seq1        RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
                                                +ilmwlvglqnvfshqlprmpkeyitrlvfdpkhktlalikdgrviggicfrmfptqgfteivfcavtsneqvkgygthlmnhlkeyhikhnil+fltyadeyaigyfkkqgfskdikvpksrylgyikdyegatlmecelnpripytelshiikkqkeiikklierkq qirk ypgl cfkegvrqipiesipgiretgwkp+gkek...
                                                RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
 
Protopterus annectens@comp301579_c0_seq1        MADSGQASQPRLLQSQPSGIVPSSGSTTGSSTTSGTGSGSSDPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
                                                                                  g g +++dparpglsqqqrasqrk q ra+prakkleklgvfsackanesckcngwknpnp taprmdlqqpaaslsepcrsc+haladhvshlenvs +einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqyk...
                                                                                         DPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
 
Latimeria chalumnae@ENSLACP00000012334  RPLQNRSNFIEPADSKQSSLLPGSLSAVAMAEPVQQASQPRAGGSSLNNGPNPGPSGGAGSSGGSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
                                                                                                g     +g+dparpglsqqqrasqrk+qvra+prakkleklgvfsackan++ckcngwknpnpptaprmdlqqpaaslsepcrsc+haladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrk+ilqm++pvvegs...
                                                                                                       GSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
 
Danio rerio@ENSDARP00000011795  MADPAAQSSAQPRLQQAQSSGPTGSNSNPGAGSSDPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
                                                               +++dparpglsqqq+ sq+kaqvr++prakkleklgvfs+ckan++ckcngwknpnppta rm+lqq+aasl+e crsc+h la hvshlenvseeeinrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqmgkpvvegslgsppfekpnieqgvlnfvqykfshl+pkerqtm+elsk...
                                                                  DPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
 
Oreochromis niloticus@ENSONIP00000001395        MSDPAAQALQPRLLQAQSAGSASSSTTTTAGSGSGNSDPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...
                                                                            +agsg +++dp rpglsqqqrasq+kaqvra+prakkleklgvfsackan++ckcngwknpnpp a r dlqq+aaslsepcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqykfshl...
                                                                             AGSGSGNSDPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...

test/GNTPAN12210_hmm_changeCost.score  view on Meta::CPAN

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                                        QAEESCKCNGWKNPNPPPTPPRADLQQAVVSLTEPCRSCSHTLAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVIEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Taeniopygia guttata@ENSTGUP00000003370  QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
                                        +a+esckcngwknpnp pt+pr++lqq aasl epcrscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgrtll...
                                        QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Xenopus tropicalis@ENSXETP00000030583   MVCVAGSGSSALPQGSPAIVASAASGAARGAESPSAAGGGGVGSAPLRIAAKKGQLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
                                                                               g+ +++  r++ +k q+r++prakkleklgv+sacka e+ckcngwknpnp pt+p mdlqq+++sl epcrsc+h+la+hvshlenvseee+nrllg+v+d e+lf++vhkeed+dtkqvyf+lfkllrkcilqm kp vegslgsppfekp+ieqgv+nfvqykfshlp+k...
                                                                                              QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
 
Latimeria chalumnae@ENSLACP00000007242  MSEGGGVQQGSPAPGSAGSVPAGGADGSGSAAGSARIAMKKAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
                                                                   ++   +++r++++kaq+ra+prakkleklgv+sacka+esckcngwk+pnp pt+pr dlqq++ sl+epcrscsh+ladhvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfvqykfshlppkerqt+vel+km...
                                                                                KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
 
Danio rerio@ENSDARP00000085190  MSESTGIPQGSPAVGAAGSAPAAPGVGGTECSGAAVGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
                                                          gg+ +++   +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk++n     p pt+pr++q +a+sl+epcrscshal dhv+hlenvseee+nrllg+v+dve+l+++vhkeed dtkqvyf lfkllrkcilqmg+pvve l+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmf...
                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWK          PTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
 
Oreochromis niloticus@ENSONIP00000003026        MADSAGIQQGSPAIGAAGLVPAAPGAGGTEGSGAARGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...
                                                                          gg+  ++   +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk++np pt+p+ ++q +a++l+epcrscsh+l dhv+hlenvseee+nrllg+v+dve+l+++ hkeed+dtkqvyf lfkllrk+ilqmgkp+ e  +sppfekp+ieqgv+nfvqykfshlp+kerqt++...
                                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...

test/GNTPAN12210_hmm_changeID.ali  view on Meta::CPAN

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>Gallus gallus@ENSGALP00000005317_hmmcleaned
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617_hmmcleaned
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCGHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Anolis carolinensis@ENSACAP00000017686_hmmcleaned
                                                                                         DPVRPGLSQQQ**RASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPN*****P*PTAPRMDLQQTVTNLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Protopterus annectens@comp246593_c0_seq1_hmmcleaned
**********************************************************************************************************************************************************************************************************************************************************...
>Protopterus annectens@comp301579_c0_seq1_hmmcleaned
                                                                                         DPARPGLSQQQ**RASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPN*****P*ATAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSDDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Latimeria chalumnae@ENSLACP00000012334_hmmcleaned
                                                                                       GSDPARPGLSQQQ**RASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PTAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKSILQMSRPVVEGSL...
>Danio rerio@ENSDARP00000011795_hmmcleaned
                                                                                         DPARPGLSQQQ**WSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPN*****P*PTAARMELQQQAASLTETCRSCGHSLA*EHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Oreochromis niloticus@ENSONIP00000001395_hmmcleaned
                                                                      AGSGS***********GNSDPVRPGLSQQQ**RASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PSATRIDLQQQAASLSEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Homo sapiens@ENSP00000263754_hmmcleaned
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Mus musculus@ENSMUSP00000000724_hmmcleaned
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685_hmmcleaned

test/GNTPAN12210_hmm_changeID.ali  view on Meta::CPAN

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>Meleagris gallopavo@ENSMGAP00000011451_hmmcleaned
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380_hmmcleaned
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414_hmmcleaned
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Taeniopygia guttata@ENSTGUP00000003370_hmmcleaned
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRAELQQAAASLAEPCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Xenopus tropicalis@ENSXETP00000030583_hmmcleaned
                                                                                                             QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPN*****PPPTPPKMDLQQTVVSLAEPCRSCGHTLA*AHVSH*LENVSEEEMNRLLGIVLDIEYLFTCV***HKEEDADTKQVY*FCLFKLLRKCILQMVKPAVEGSL...
>Latimeria chalumnae@ENSLACP00000007242_hmmcleaned
                                                                                                           KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPN*****PPPTPPRVDLQQTVGSLTEPCRSCSHTLA*DHVSH*LENVLEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPAVEGSL...
>Danio rerio@ENSDARP00000085190_hmmcleaned
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAE*QPTAVSLMEPCRSCSHALG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCV***HKEEDPDTKQVY*FSLFKLLRKCILQMGRPVVE*AL...
>Oreochromis niloticus@ENSONIP00000003026_hmmcleaned
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQN*****PPPTPPQTEQQSNAVNLQEPCRSCSHTLG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCI***HKEEDADTKQVY*FSLFKLLRKSILQMGKPMLEAQ*...

test/GNTPAN12210_hmm_changeID.log  view on Meta::CPAN

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Taeniopygia guttata@ENSTGUP00000002617
        698-730
Anolis carolinensis@ENSACAP00000017686
        1-89
        443-529
Protopterus annectens@comp246593_c0_seq1
Protopterus annectens@comp301579_c0_seq1
        43-89
        438-495
        577-732
Latimeria chalumnae@ENSLACP00000012334
        13-87
        451-473
        693-729
        779-818
Danio rerio@ENSDARP00000011795
        1-89
        424-529
Oreochromis niloticus@ENSONIP00000001395
        1-70
Homo sapiens@ENSP00000263754

test/GNTPAN12210_hmm_changeID.log  view on Meta::CPAN

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Anolis carolinensis@ENSACAP00000000014
        425-446
Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
Meleagris gallopavo@ENSMGAP00000011414
Taeniopygia guttata@ENSTGUP00000003370
        425-446
Xenopus tropicalis@ENSXETP00000030583
        26-109
        412-446
Latimeria chalumnae@ENSLACP00000007242
        26-107
        425-446
Danio rerio@ENSDARP00000085190
        26-107
        408-455
Oreochromis niloticus@ENSONIP00000003026
        26-107
        412-456

test/GNTPAN12210_hmm_changeID.score  view on Meta::CPAN

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                                                                                                           DPVRPGLSQQQRASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPNPPTAPRMDLQQTVTNLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVE...
 
Protopterus annectens@comp246593_c0_seq1        RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
                                                +ilmwlvglqnvfshqlprmpkeyitrlvfdpkhktlalikdgrviggicfrmfptqgfteivfcavtsneqvkgygthlmnhlkeyhikhnil+fltyadeyaigyfkkqgfskdikvpksrylgyikdyegatlmecelnpripytelshiikkqkeiikklierkq qirk ypgl cfkegvrqipiesipgiretgwkp+gkek...
                                                RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
 
Protopterus annectens@comp301579_c0_seq1        MADSGQASQPRLLQSQPSGIVPSSGSTTGSSTTSGTGSGSSDPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
                                                                                  g g +++dparpglsqqqrasqrk q ra+prakkleklgvfsackanesckcngwknpnp taprmdlqqpaaslsepcrsc+haladhvshlenvs +einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqyk...
                                                                                         DPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
 
Latimeria chalumnae@ENSLACP00000012334  RPLQNRSNFIEPADSKQSSLLPGSLSAVAMAEPVQQASQPRAGGSSLNNGPNPGPSGGAGSSGGSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
                                                                                                g     +g+dparpglsqqqrasqrk+qvra+prakkleklgvfsackan++ckcngwknpnpptaprmdlqqpaaslsepcrsc+haladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrk+ilqm++pvvegs...
                                                                                                       GSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
 
Danio rerio@ENSDARP00000011795  MADPAAQSSAQPRLQQAQSSGPTGSNSNPGAGSSDPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
                                                               +++dparpglsqqq+ sq+kaqvr++prakkleklgvfs+ckan++ckcngwknpnppta rm+lqq+aasl+e crsc+h la hvshlenvseeeinrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqmgkpvvegslgsppfekpnieqgvlnfvqykfshl+pkerqtm+elsk...
                                                                  DPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
 
Oreochromis niloticus@ENSONIP00000001395        MSDPAAQALQPRLLQAQSAGSASSSTTTTAGSGSGNSDPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...
                                                                            +agsg +++dp rpglsqqqrasq+kaqvra+prakkleklgvfsackan++ckcngwknpnpp a r dlqq+aaslsepcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqykfshl...
                                                                             AGSGSGNSDPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...

test/GNTPAN12210_hmm_changeID.score  view on Meta::CPAN

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                                        QAEESCKCNGWKNPNPPPTPPRADLQQAVVSLTEPCRSCSHTLAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVIEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Taeniopygia guttata@ENSTGUP00000003370  QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
                                        +a+esckcngwknpnp pt+pr++lqq aasl epcrscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgrtll...
                                        QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Xenopus tropicalis@ENSXETP00000030583   MVCVAGSGSSALPQGSPAIVASAASGAARGAESPSAAGGGGVGSAPLRIAAKKGQLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
                                                                               g+ +++  r++ +k q+r++prakkleklgv+sacka e+ckcngwknpnp pt+p mdlqq+++sl epcrsc+h+la+hvshlenvseee+nrllg+v+d e+lf++vhkeed+dtkqvyf+lfkllrkcilqm kp vegslgsppfekp+ieqgv+nfvqykfshlp+k...
                                                                                              QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
 
Latimeria chalumnae@ENSLACP00000007242  MSEGGGVQQGSPAPGSAGSVPAGGADGSGSAAGSARIAMKKAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
                                                                   ++   +++r++++kaq+ra+prakkleklgv+sacka+esckcngwk+pnp pt+pr dlqq++ sl+epcrscsh+ladhvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfvqykfshlppkerqt+vel+km...
                                                                                KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
 
Danio rerio@ENSDARP00000085190  MSESTGIPQGSPAVGAAGSAPAAPGVGGTECSGAAVGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
                                                          gg+ +++   +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk++n     p pt+pr++q +a+sl+epcrscshal dhv+hlenvseee+nrllg+v+dve+l+++vhkeed dtkqvyf lfkllrkcilqmg+pvve l+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmf...
                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
 
Oreochromis niloticus@ENSONIP00000003026        MADSAGIQQGSPAIGAAGLVPAAPGAGGTEGSGAARGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...
                                                                          gg+  ++   +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk++np pt+p+ ++q +a++l+epcrscsh+l dhv+hlenvseee+nrllg+v+dve+l+++ hkeed+dtkqvyf lfkllrk+ilqmgkp+ e  +sppfekp+ieqgv+nfvqykfshlp+kerqt++...
                                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...

test/GNTPAN12210_hmm_perseqX.ali  view on Meta::CPAN

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>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCGHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Anolis carolinensis@ENSACAP00000017686
                                                                                         DPVRPGLSQQQ**RASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPN*****P*PTAPRMDLQQTVTNLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Protopterus annectens@comp246593_c0_seq1
**********************************************************************************************************************************************************************************************************************************************************...
>Protopterus annectens@comp301579_c0_seq1
                                                                                         DPARPGLSQQQ**RASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPN*****P*ATAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSDDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSRPVVEGSL...
>Latimeria chalumnae@ENSLACP00000012334
                                                                                       GSDPARPGLSQQQ**RASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PTAPRMDLQQPAASLSEPCRSCGHALA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKSILQMSRPVVEGSL...
>Danio rerio@ENSDARP00000011795
                                                                                         DPARPGLSQQQ**WSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPN*****P*PTAARMELQQQAASLTETCRSCGHSLA*EHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Oreochromis niloticus@ENSONIP00000001395
                                                                                         DPVRPGLSQQQ**RASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPN*****P*PSATRIDLQQQAASLSEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Homo sapiens@ENSP00000263754
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Mus musculus@ENSMUSP00000000724
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685

test/GNTPAN12210_hmm_perseqX.ali  view on Meta::CPAN

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>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Taeniopygia guttata@ENSTGUP00000003370
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRAELQQAAASLAEPCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Xenopus tropicalis@ENSXETP00000030583
                                                                                                             QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPN*****PPPTPPKMDLQQTVVSLAEPCRSCGHTLA*AHVSH*LENVSEEEMNRLLGIVLDIEYLFTCV***HKEEDADTKQVY*FCLFKLLRKCILQMVKPAVEGSL...
>Latimeria chalumnae@ENSLACP00000007242
                                                                                                           KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPN*****PPPTPPRVDLQQTVGSLTEPCRSCSHTLA*DHVSH*LENVLEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPAVEGSL...
>Danio rerio@ENSDARP00000085190
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAE*QPTAVSLMEPCRSCSHALG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCV***HKEEDPDTKQVY*FSLFKLLRKCILQMGRPVVE*AL...
>Oreochromis niloticus@ENSONIP00000003026
                                                                                                           KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQN*****PPPTPPQTEQQSNAVNLQEPCRSCSHTLG*DHVTH*LENVSEEEMNRLLGIVLDVEYLYTCI***HKEEDADTKQVY*FSLFKLLRKSILQMGKPMLEAQ*...

test/GNTPAN12210_hmm_perseqX.log  view on Meta::CPAN

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        451-531
        698-730
Anolis carolinensis@ENSACAP00000017686
        1-89
        442-529
Protopterus annectens@comp246593_c0_seq1
Protopterus annectens@comp301579_c0_seq1
        43-89
        424-497
        577-732
Latimeria chalumnae@ENSLACP00000012334
        13-87
        449-478
        693-729
        779-818
Danio rerio@ENSDARP00000011795
        1-89
        424-529
Oreochromis niloticus@ENSONIP00000001395
        1-89
Homo sapiens@ENSP00000263754

test/GNTPAN12210_hmm_perseqX.log  view on Meta::CPAN

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Anolis carolinensis@ENSACAP00000000014
        425-446
Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
Meleagris gallopavo@ENSMGAP00000011414
Taeniopygia guttata@ENSTGUP00000003370
        425-446
Xenopus tropicalis@ENSXETP00000030583
        26-109
        412-446
Latimeria chalumnae@ENSLACP00000007242
        26-107
        412-446
Danio rerio@ENSDARP00000085190
        26-107
        408-455
Oreochromis niloticus@ENSONIP00000003026
        26-107
        412-456

test/GNTPAN12210_hmm_perseqX.score  view on Meta::CPAN

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                                                                                                           DPVRPGLSQQQRASQRKAHARSFPRAKKLEKLGVFSACKANDSCKCNGWKNPNPPTAPRMDLQQTVTNLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVE...
 
Protopterus annectens@comp246593_c0_seq1        RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
                                                +ilmwlvglqnvfshqlprmpkeyitrlvfdpkhktlalikdgrviggicfrmfptqgfteivfcavtsneqvkgygthlmnhlkeyhikhnil+fltyadeyaigyfkkqgfskdikvpksrylgyikdyegatlmecelnpripytelshiikkqkeiikklierkq qirk ypgl cfkegvrqipiesipgiretgwkp gkek...
                                                RILMWLVGLQNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPTQGFTEIVFCAVTSNEQVKGYGTHLMNHLKEYHIKHNILYFLTYADEYAIGYFKKQGFSKDIKVPKSRYLGYIKDYEGATLMECELNPRIPYTELSHIIKKQKEIIKKLIERKQTQIRKIYPGLPCFKEGVRQIPIESIPGIRETGWKPTGKEK...
 
Protopterus annectens@comp301579_c0_seq1        MADSGQASQPRLLQSQPSGIVPSSGSTTGSSTTSGTGSGSSDPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
                                                                                       ++dparpglsqqqrasqrk q ra+prakkleklgvfsackanesckcngwknpnp taprmdlqqpa+slsepcrsc+haladhvshlenvs +einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqyk...
                                                                                         DPARPGLSQQQRASQRKLQARAFPRAKKLEKLGVFSACKANESCKCNGWKNPNPATAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSDDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSRPVVEGSLGSPPFEKPNIEQGVLNFVQYK...
 
Latimeria chalumnae@ENSLACP00000012334  RPLQNRSNFIEPADSKQSSLLPGSLSAVAMAEPVQQASQPRAGGSSLNNGPNPGPSGGAGSSGGSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
                                                                                                      +g+dparpglsqqqrasq+k+qvr++prakkleklgvfsackan++ckcngwknpnppt+prmdlqqpa+slsepcrsc+haladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrk+ilqm++pvvegs...
                                                                                                       GSDPARPGLSQQQRASQRKMQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPTAPRMDLQQPAASLSEPCRSCGHALADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKSILQMSRPVVEGS...
 
Danio rerio@ENSDARP00000011795  MADPAAQSSAQPRLQQAQSSGPTGSNSNPGAGSSDPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
                                                             g +++dparpglsqqq+ sq+kaqvr++prakkleklgvfs+ckan++ckcngwknpnppta rm+lqq+a+sl+e crsc+h la hvshlenvseeeinrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqmgkpvvegslgsppfekpnieqgvlnfvqykfshl+pkerqtm+elsk...
                                                                  DPARPGLSQQQWSSQKKAQVRSFPRAKKLEKLGVFSSCKANDACKCNGWKNPNPPTAARMELQQQAASLTETCRSCGHSLAEHVSHLENVSEEEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMGKPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHLAPKERQTMYELSK...
 
Oreochromis niloticus@ENSONIP00000001395        MSDPAAQALQPRLLQAQSAGSASSSTTTTAGSGSGNSDPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...
                                                                                    +dp rpglsqqqrasq+kaqvra+prakkleklgvfsackan++ckcngwknpnpp a r dlqq+a+slsepcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvqykfshl...
                                                                                     DPVRPGLSQQQRASQKKAQVRAFPRAKKLEKLGVFSACKANDTCKCNGWKNPNPPSATRIDLQQQAASLSEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMSQPVVEGSLGSPPFEKPNIEQGVLNFVQYKFSHL...

test/GNTPAN12210_hmm_perseqX.score  view on Meta::CPAN

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                                        QAEESCKCNGWKNPNPPPTPPRADLQQAVVSLTEPCRSCSHTLAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVIEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Taeniopygia guttata@ENSTGUP00000003370  QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
                                        +a+esckcngwknpnp pt+pr++lqq a+sl epcrscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgr+ll...
                                        QAEESCKCNGWKNPNPPPTPPRAELQQAAASLAEPCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLL...
 
Xenopus tropicalis@ENSXETP00000030583   MVCVAGSGSSALPQGSPAIVASAASGAARGAESPSAAGGGGVGSAPLRIAAKKGQLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
                                                                                       r++ +k q+r++prakkleklgv+sacka e+ckcngwknpnp pt+p mdlqq+++sl epcrsc+h+la+hvshlenvseee+nrllg+v+d e+lf++vhkeed+dtkqvyf+lfkllrkcilqm kp vegslgsppfekp+ieqgv+nfvqykfshlp+k...
                                                                                              QLRSAPRAKKLEKLGVYSACKADETCKCNGWKNPNPPPTPPKMDLQQTVVSLAEPCRSCGHTLAAHVSHLENVSEEEMNRLLGIVLDIEYLFTCVHKEEDADTKQVYFCLFKLLRKCILQMVKPAVEGSLGSPPFEKPSIEQGVNNFVQYKFSHLPSK...
 
Latimeria chalumnae@ENSLACP00000007242  MSEGGGVQQGSPAPGSAGSVPAGGADGSGSAAGSARIAMKKAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
                                                                        +++r++++kaq+ra+prakkleklgv+sacka+esckcngwk pnp pt+pr dlqq++ sl+epcrscsh+ladhvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfvqykfshlppkerqt+vel+km...
                                                                                KAQLRAAPRAKKLEKLGVYSACKAEESCKCNGWKSPNPPPTPPRVDLQQTVGSLTEPCRSCSHTLADHVSHLENVLEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPAVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPPKERQTIVELAKM...
 
Danio rerio@ENSDARP00000085190  MSESTGIPQGSPAVGAAGSAPAAPGVGGTECSGAAVGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
                                                                    +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk +np p     t+pr++q +a+sl+epcrscshal dhv hlenvseee+nrllg+v+dve+l+++vhkeed dtkqvyf lfkllrkcilqmg+pvve l+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmf...
                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPPPTPPRAEQPTAVSLMEPCRSCSHALGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCVHKEEDPDTKQVYFSLFKLLRKCILQMGRPVVEALESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMF...
 
Oreochromis niloticus@ENSONIP00000003026        MADSAGIQQGSPAIGAAGLVPAAPGAGGTEGSGAARGSARIAVKKAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...
                                                                                    +++r++++kaq+r+ pr+kkleklgv+s+cka+ +ckcngwk +np pt+p  + q  a++l epcrscsh+l dhv hlenvseee+nrllg+v+dve+l+++ hkeed+dtkqvyf lfkllrk+ilqmgkp+ e  +sppfekp+ieqgv+nfvqykfshlp+kerqt++...
                                                                                            KAQLRSSPRPKKLEKLGVYSSCKAEGACKCNGWKSQNPPPTPPQTEQQSNAVNLQEPCRSCSHTLGDHVTHLENVSEEEMNRLLGIVLDVEYLYTCIHKEEDADTKQVYFSLFKLLRKSILQMGKPMLEAQESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIM...