AIIA-GMT

 view release on metacpan or  search on metacpan

lib/AIIA/GMT.pm  view on Meta::CPAN

our $VERSION = '0.05';

require XSLoader;
XSLoader::load('AIIA::GMT', $VERSION);

# Preloaded methods go here.

# Autoload methods go after =cut, and are processed by the autosplit program.
my $SERVER_URL = 'http://bcsp1.iis.sinica.edu.tw:8080/aiiagmt/XmlRpcServlet';

sub pmid2entity {
    my $id = shift;
    die "Usage: &pmid2entity(\'PubMed Article ID\');\n" if ($id !~ /^\d+$/);
    return &submit($id);
}

sub text2entity {
    my $txt = shift;
    $txt =~ s/\n//g;
    my $num;
    map {$num++;} split(/\s/, $txt);
    die "Usage: &text2entity(\'less than 3000 words\');\n" if ($num > 3000);
    return &submit($txt);
}

sub submit {
    my @args = (shift);
    my $client = Frontier::Client->new(url => $SERVER_URL, debug => 0);
    my $ret = $client->call('Annotator.getAnnotation', @args);
    my @rep;
    map {push @rep, $_->{'offset'} . "\t" . $_->{'mention'};} @{$ret->{'mentions'}};
    @rep = sort @rep;
    return \@rep;
}

1;

ppport.h  view on Meta::CPAN

my @srcext = qw( xs c h cc cpp );
my $srcext = join '|', @srcext;

if (@ARGV) {
  my %seen;
  @files = grep { -f && !exists $seen{$_} } map { glob $_ } @ARGV;
}
else {
  eval {
    require File::Find;
    File::Find::find(sub {
      $File::Find::name =~ /\.($srcext)$/i
          and push @files, $File::Find::name;
    }, '.');
  };
  if ($@) {
    @files = map { glob "*.$_" } @srcext;
  }
}

if (!@ARGV || $opt{filter}) {

ppport.h  view on Meta::CPAN

  else {
    info("Looks good");
  }
}

close PATCH if $patch_opened;

exit 0;


sub mydiff
{
  local *F = shift;
  my($file, $str) = @_;
  my $diff;

  if (exists $opt{diff}) {
    $diff = run_diff($opt{diff}, $file, $str);
  }

  if (!defined $diff and can_use('Text::Diff')) {

ppport.h  view on Meta::CPAN

  if (!defined $diff) {
    error("Cannot generate a diff. Please install Text::Diff or use --copy.");
    return;
  }

  print F $diff;

}

sub run_diff
{
  my($prog, $file, $str) = @_;
  my $tmp = 'dppptemp';
  my $suf = 'aaa';
  my $diff = '';
  local *F;

  while (-e "$tmp.$suf") { $suf++ }
  $tmp = "$tmp.$suf";

ppport.h  view on Meta::CPAN

    unlink $tmp;
  }
  else {
    error("Cannot open '$tmp' for writing: $!");
  }

  return undef;
}

sub can_use
{
  eval "use @_;";
  return $@ eq '';
}

sub rec_depend
{
  my $func = shift;
  my %seen;
  return () unless exists $depends{$func};
  grep !$seen{$_}++, map { ($_, rec_depend($_)) } @{$depends{$func}};
}

sub parse_version
{
  my $ver = shift;

  if ($ver =~ /^(\d+)\.(\d+)\.(\d+)$/) {
    return ($1, $2, $3);
  }
  elsif ($ver !~ /^\d+\.[\d_]+$/) {
    die "cannot parse version '$ver'\n";
  }

ppport.h  view on Meta::CPAN

  if ($r < 5 || ($r == 5 && $v < 6)) {
    if ($s % 10) {
      die "cannot parse version '$ver'\n";
    }
  }

  return ($r, $v, $s);
}

sub format_version
{
  my $ver = shift;

  $ver =~ s/$/000000/;
  my($r,$v,$s) = $ver =~ /(\d+)\.(\d{3})(\d{3})/;

  $v = int $v;
  $s = int $s;

  if ($r < 5 || ($r == 5 && $v < 6)) {

ppport.h  view on Meta::CPAN

    $ver = sprintf "%d.%03d", $r, $v;
    $s > 0 and $ver .= sprintf "_%02d", $s;

    return $ver;
  }

  return sprintf "%d.%d.%d", $r, $v, $s;
}

sub info
{
  $opt{quiet} and return;
  print @_, "\n";
}

sub diag
{
  $opt{quiet} and return;
  $opt{diag} and print @_, "\n";
}

sub warning
{
  $opt{quiet} and return;
  print "*** ", @_, "\n";
}

sub error
{
  print "*** ERROR: ", @_, "\n";
}

my %given_hints;
sub hint
{
  $opt{quiet} and return;
  $opt{hints} or return;
  my $func = shift;
  exists $hints{$func} or return;
  $given_hints{$func}++ and return;
  my $hint = $hints{$func};
  $hint =~ s/^/   /mg;
  print "   --- hint for $func ---\n", $hint;
}

sub usage
{
  my($usage) = do { local(@ARGV,$/)=($0); <> } =~ /^=head\d$HS+SYNOPSIS\s*^(.*?)\s*^=/ms;
  my %M = ( 'I' => '*' );
  $usage =~ s/^\s*perl\s+\S+/$^X $0/;
  $usage =~ s/([A-Z])<([^>]+)>/$M{$1}$2$M{$1}/g;

  print <<ENDUSAGE;

Usage: $usage

ppport.h  view on Meta::CPAN

#  define PUSHu(u)                       STMT_START { sv_setuv(TARG, (UV)(u)); PUSHTARG;  } STMT_END
#endif

#ifndef XPUSHu
#  define XPUSHu(u)                      STMT_START { sv_setuv(TARG, (UV)(u)); XPUSHTARG; } STMT_END
#endif

#if (PERL_VERSION < 4) || ((PERL_VERSION == 4) && (PERL_SUBVERSION <= 5))
/* Replace: 1 */
#  define PL_DBsingle               DBsingle
#  define PL_DBsub                  DBsub
#  define PL_Sv                     Sv
#  define PL_compiling              compiling
#  define PL_copline                copline
#  define PL_curcop                 curcop
#  define PL_curstash               curstash
#  define PL_debstash               debstash
#  define PL_defgv                  defgv
#  define PL_diehook                diehook
#  define PL_dirty                  dirty
#  define PL_dowarn                 dowarn