Bio-MUST-Drivers

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META.yml  view on Meta::CPAN

  Moose: '0'
  Moose::Role: '0'
  Path::Class: '0'
  Smart::Comments: '0'
  Test::Most: '0'
  Tie::IxHash: '0'
  aliased: '0'
  autodie: '0'
  experimental: '0'
  feature: '0'
  namespace::autoclean: '0'
  parent: '0'
  perl: '5.018'
  strict: '0'
  warnings: '0'
version: '0.242720'
x_generated_by_perl: v5.26.3
x_serialization_backend: 'YAML::Tiny version 1.74'
x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'

Makefile.PL  view on Meta::CPAN

    "Moose" => 0,
    "Moose::Role" => 0,
    "Path::Class" => 0,
    "Smart::Comments" => 0,
    "Test::Most" => 0,
    "Tie::IxHash" => 0,
    "aliased" => 0,
    "autodie" => 0,
    "experimental" => 0,
    "feature" => 0,
    "namespace::autoclean" => 0,
    "parent" => 0,
    "strict" => 0,
    "warnings" => 0
  },
  "TEST_REQUIRES" => {
    "Test::Files" => 0,
    "Test::Most" => 0
  },
  "VERSION" => "0.242720",
  "test" => {

lib/Bio/MUST/Drivers/Blast/Database/Temporary.pm  view on Meta::CPAN

package Bio::MUST::Drivers::Blast::Database::Temporary;
# ABSTRACT: Internal class for BLAST driver
$Bio::MUST::Drivers::Blast::Database::Temporary::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say);

use Smart::Comments '###';

use Carp;
use IPC::System::Simple qw(system);
use Module::Runtime qw(use_module);
use Path::Class qw(file);

lib/Bio/MUST/Drivers/Cap3.pm  view on Meta::CPAN

package Bio::MUST::Drivers::Cap3;
# ABSTRACT: Bio::MUST driver for running the CAP3 assembly program
$Bio::MUST::Drivers::Cap3::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say);

# use Smart::Comments;

use Carp;
use IPC::System::Simple qw(system);
use Module::Runtime qw(use_module);
use Path::Class qw(file);

lib/Bio/MUST/Drivers/CdHit.pm  view on Meta::CPAN

package Bio::MUST::Drivers::CdHit;
# ABSTRACT: Bio::MUST driver for running the CD-HIT program
# CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
$Bio::MUST::Drivers::CdHit::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say);

# use Smart::Comments;

use Carp;
use IPC::System::Simple qw(system);
use Module::Runtime qw(use_module);
use Path::Class qw(file);

lib/Bio/MUST/Drivers/ClustalO.pm  view on Meta::CPAN

package Bio::MUST::Drivers::ClustalO;
# ABSTRACT: Bio::MUST driver for running the Clustal Omega program
# CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
$Bio::MUST::Drivers::ClustalO::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say);

# use Smart::Comments;

use Carp;
use IPC::System::Simple qw(system);
use Module::Runtime qw(use_module);
use Path::Class qw(file);

lib/Bio/MUST/Drivers/Exonerate.pm  view on Meta::CPAN

package Bio::MUST::Drivers::Exonerate;
# ABSTRACT: Bio::MUST driver for running the Exonerate alignment program
$Bio::MUST::Drivers::Exonerate::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say);

use Carp;
use Const::Fast;
use IPC::System::Simple qw(system);
use List::AllUtils qw(mesh);
use Module::Runtime qw(use_module);
use Path::Class qw(file);

lib/Bio/MUST/Drivers/Exonerate/Aligned.pm  view on Meta::CPAN

package Bio::MUST::Drivers::Exonerate::Aligned;
# ABSTRACT: Bio::MUST driver for running the Exonerate alignment program
$Bio::MUST::Drivers::Exonerate::Aligned::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say switch);
use experimental qw(smartmatch);        # to suppress warnings about 'when'

# use Smart::Comments '###';

use Carp;
use Const::Fast;
use IPC::System::Simple qw(system);

lib/Bio/MUST/Drivers/Exonerate/Sugar.pm  view on Meta::CPAN

package Bio::MUST::Drivers::Exonerate::Sugar;
# ABSTRACT: Internal class for exonerate driver
$Bio::MUST::Drivers::Exonerate::Sugar::VERSION = '0.242720';
use Moose;
use namespace::autoclean;


has $_ => (
    is       => 'ro',
    isa      => 'Str',
    required => 1,
) for qw(
    query_id target_id
);

lib/Bio/MUST/Drivers/Hmmer/Model.pm  view on Meta::CPAN

package Bio::MUST::Drivers::Hmmer::Model;
# ABSTRACT: Internal class for HMMER3 driver
# CONTRIBUTOR: Arnaud DI FRANCO <arnaud.difranco@gmail.com>
$Bio::MUST::Drivers::Hmmer::Model::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say);

use Carp;

extends 'Bio::FastParsers::Hmmer::Model';
with 'Bio::MUST::Drivers::Roles::Hmmerable' => {
    -excludes => [ qw(scan) ]
};

lib/Bio/MUST/Drivers/Hmmer/Model/Database.pm  view on Meta::CPAN

package Bio::MUST::Drivers::Hmmer::Model::Database;
# ABSTRACT: Internal class for HMMER3 driver
# CONTRIBUTOR: Loic MEUNIER <loic.meunier@doct.uliege.be>
$Bio::MUST::Drivers::Hmmer::Model::Database::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say);

# use Smart::Comments;

use Carp;
use List::AllUtils;

extends 'Bio::FastParsers::Base';

lib/Bio/MUST/Drivers/Hmmer/Model/Temporary.pm  view on Meta::CPAN

package Bio::MUST::Drivers::Hmmer::Model::Temporary;
# ABSTRACT: Internal class for HMMER3 driver
# CONTRIBUTOR: Arnaud DI FRANCO <arnaud.difranco@gmail.com>
$Bio::MUST::Drivers::Hmmer::Model::Temporary::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say);

use Carp;
use File::Temp qw(tempfile);
use IPC::System::Simple qw(system);
use Module::Runtime qw(use_module);
use Path::Class;

lib/Bio/MUST/Drivers/Mafft.pm  view on Meta::CPAN

package Bio::MUST::Drivers::Mafft;
# ABSTRACT: Bio::MUST driver for running the MAFFT program
# CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
$Bio::MUST::Drivers::Mafft::VERSION = '0.242720';
use Moose;
use namespace::autoclean;

use autodie;
use feature qw(say);

use Smart::Comments '###';

use Carp;
use IPC::System::Simple qw(system);
use Module::Runtime qw(use_module);
use Path::Class qw(file);

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