AIIA-GMT

 view release on metacpan or  search on metacpan

lib/AIIA/GMT.pm  view on Meta::CPAN

sub pmid2entity {
    my $id = shift;
    die "Usage: &pmid2entity(\'PubMed Article ID\');\n" if ($id !~ /^\d+$/);
    return &submit($id);
}

sub text2entity {
    my $txt = shift;
    $txt =~ s/\n//g;
    my $num;
    map {$num++;} split(/\s/, $txt);
    die "Usage: &text2entity(\'less than 3000 words\');\n" if ($num > 3000);
    return &submit($txt);
}

sub submit {
    my @args = (shift);
    my $client = Frontier::Client->new(url => $SERVER_URL, debug => 0);
    my $ret = $client->call('Annotator.getAnnotation', @args);
    my @rep;
    map {push @rep, $_->{'offset'} . "\t" . $_->{'mention'};} @{$ret->{'mentions'}};
    @rep = sort @rep;
    return \@rep;
}

1;
__END__
# Below is stub documentation for your module. You'd better edit it!

=head1 NAME

ppport.h  view on Meta::CPAN

else {
  $opt{'compat-version'} = 5;
}

# Never use C comments in this file!!!!!
my $ccs  = '/'.'*';
my $cce  = '*'.'/';
my $rccs = quotemeta $ccs;
my $rcce = quotemeta $cce;

my %API = map { /^(\w+)\|([^|]*)\|([^|]*)\|(\w*)$/
                ? ( $1 => {
                      ($2                  ? ( base     => $2 ) : ()),
                      ($3                  ? ( todo     => $3 ) : ()),
                      (index($4, 'v') >= 0 ? ( varargs  => 1  ) : ()),
                      (index($4, 'p') >= 0 ? ( provided => 1  ) : ()),
                      (index($4, 'n') >= 0 ? ( nothxarg => 1  ) : ()),
                    } )
                : die "invalid spec: $_" } qw(
AvFILLp|5.004050||p
AvFILL|||

ppport.h  view on Meta::CPAN

    }
  }
  $hint = $1 if m{^\s*$rccs\sHint:\s+(\w+)\s*$};

  $replace     = $1 if m{^\s*$rccs\s+Replace:\s+(\d+)\s+$rcce\s*$};
  $replace{$2} = $1 if $replace and m{^\s*#\s*define\s+(\w+)(?:\([^)]*\))?\s+(\w+)};
  $replace{$2} = $1 if m{^\s*#\s*define\s+(\w+)(?:\([^)]*\))?\s+(\w+).*$rccs\s+Replace\s+$rcce};
  $replace{$1} = $2 if m{^\s*$rccs\s+Replace (\w+) with (\w+)\s+$rcce\s*$};

  if (m{^\s*$rccs\s+(\w+)\s+depends\s+on\s+(\w+(\s*,\s*\w+)*)\s+$rcce\s*$}) {
    push @{$depends{$1}}, map { s/\s+//g; $_ } split /,/, $2;
  }

  $need{$1} = 1 if m{^#if\s+defined\(NEED_(\w+)(?:_GLOBAL)?\)};
}

if (exists $opt{'api-info'}) {
  my $f;
  my $count = 0;
  my $match = $opt{'api-info'} =~ m!^/(.*)/$! ? $1 : "^\Q$opt{'api-info'}\E\$";
  for $f (sort { lc $a cmp lc $b } keys %API) {

ppport.h  view on Meta::CPAN

  }
  exit 0;
}

my @files;
my @srcext = qw( xs c h cc cpp );
my $srcext = join '|', @srcext;

if (@ARGV) {
  my %seen;
  @files = grep { -f && !exists $seen{$_} } map { glob $_ } @ARGV;
}
else {
  eval {
    require File::Find;
    File::Find::find(sub {
      $File::Find::name =~ /\.($srcext)$/i
          and push @files, $File::Find::name;
    }, '.');
  };
  if ($@) {
    @files = map { glob "*.$_" } @srcext;
  }
}

if (!@ARGV || $opt{filter}) {
  my(@in, @out);
  my %xsc = map { /(.*)\.xs$/ ? ("$1.c" => 1, "$1.cc" => 1) : () } @files;
  for (@files) {
    my $out = exists $xsc{$_} || /\b\Q$ppport\E$/i || !/\.($srcext)$/i;
    push @{ $out ? \@out : \@in }, $_;
  }
  if (@ARGV && @out) {
    warning("Skipping the following files (use --nofilter to avoid this):\n| ", join "\n| ", @out);
  }
  @files = @in;
}

ppport.h  view on Meta::CPAN

{
  eval "use @_;";
  return $@ eq '';
}

sub rec_depend
{
  my $func = shift;
  my %seen;
  return () unless exists $depends{$func};
  grep !$seen{$_}++, map { ($_, rec_depend($_)) } @{$depends{$func}};
}

sub parse_version
{
  my $ver = shift;

  if ($ver =~ /^(\d+)\.(\d+)\.(\d+)$/) {
    return ($1, $2, $3);
  }
  elsif ($ver !~ /^\d+\.[\d_]+$/) {