EdgeExpressDB

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www/edgeexpress/cgi/edgeXpression.cgi  view on Meta::CPAN

           'Illumina':'Expression Ratio',
           'miRNA':'Normalized Intensity'}

linestyle = {'1':'-.',
             '3':'--',
             '6':'-'}
           
fonts = {'title':25,
	 'lw':3,
	 'label':25,
	 'legend':20,
	 'ticks':17,
	 'dpi':35,
         'image_size':''}

markersize = 10

colorcycle = ['b','g','r','c','m','y','k']
markercycle =['','^','o','s','d','>','<','x','h']

www/edgeexpress/cgi/edgeXpression.cgi  view on Meta::CPAN

    graphData.append({'type':thistype,
                      'imageName':imageName,
                      'timecourse':timecourse,
                      'values':targetGenes})

    if not imageExists:
            
            pylab.xlabel('Timecourse',fontsize=fonts['label'])
            pylab.ylabel(ylabels[thistype],fontsize=fonts['label'])
            if thistype=='CAGE':
            	pylab.legend(labels,'center left',axespad=1.03,labelsep=0.001,shadow=True, prop = FontProperties(size=fonts['legend']))
            else:
            	pylab.legend(labels,'best',shadow=True, prop = FontProperties(size=fonts['legend']))

            n = len(timecourse)
            pylab.yticks(fontsize=fonts['ticks'])
            pylab.xticks(pylab.arange(n), timecourse, fontsize=fonts['ticks'])
            
            if thistype=='miRNA':
            	pylab.title('Agilent miRNA',fontsize=fonts['title'])
            else:
                pylab.title(thistype, fontsize=fonts['title'] )
            

www/edgeexpress/cgi/edgeXpression.cgi  view on Meta::CPAN

    if len(datasetstring)>0:
        datasetstring=datasetstring+','
    datasetstring=datasetstring+'\'RIKEN'+ds+'\''

       
if form.has_key('size'):
    #Its either big or small in this version
    fonts['title']=16
    fonts['lw']=1
    fonts['label']=12
    fonts['legend']=9
    fonts['ticks']=10
    fonts['dpi']=100
    fonts['image_size']='L'
    markersize=5



graphData = [];
if len(idstring)>0:
	for thistype in type:  

www/edgeexpress/css/style.css  view on Meta::CPAN

	white-space			: nowrap;
}

#expression .replication .refreshbutton
{
	color				: #FFFFFF;
	background-color	: #5E7796;
	font-weight			: bold;
}

#expression .legend
{
	padding				: 0px 0em 0em 10em;
}

#expression .graph form
{
	float				: right;
}

#expression .graph .graphbutton

www/edgeexpress/css/style.css  view on Meta::CPAN

{
	padding-bottom		: 1em;
	text-align			: center;
}

#expression_onebyone .replication form
{
	white-space			: nowrap;
}

#expression_onebyone .legend
{
	text-align			: center;
}

#expression_onebyone .replication .refreshbutton
{
	color				: #FFFFFF;
	background-color	: #5E7796;
	font-weight			: bold;
}