Bio-MUST-Apps-TwoScalp

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test/seq_in1.fasta  view on Meta::CPAN

VTGGSDMSIEEAEGVVEEIYDRIDPDARIIWGTSVDDELEGMMRTMIVVTGVESPQIYGR
NGEAQAHAEERLEDIDYVE
>sp|Q9V2S0|FTSZ1_PYRAB Cell division protein FtsZ 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ftsZ1 PE=3 SV=1
MLKLVENVVERVSAEEQKPQEIQVPQSSIDEELKKIVEQIKARIYVVGVGGAGCNTVNRM
MEVGVTGAKIIAVNTDAQDLLKIKAHQKILIGKELTRGLGAGNDPKIGEEAAKESERELR
EALEGADMVFVTCGLGGGTGTGAAPVIAEMAKKMGALTVSVVTLPFTMEGIRRAKNAEYG
LKRLAKASDTVIVIPNDKLLEVAPKLPIQMAFKVADEILVQAVKGITELITKPGLVNLDF
NDVRAVMKDGGVAMIGIGESDSEKRALEAAEQALNSPLLDVDISGAKGALISISGADVKL
EEAQQIIEYVTRNVDPKAQVIWGIQLEPELEKTIRVMVIVTGVTSRYITFQEETPEPSEE
EVPPVKIDIPEL
>sp|O29715|FTSZ1_ARCFU Cell division protein FtsZ 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ftsZ1 PE=3 SV=1
MFMKSIVEEALARAEREKKERIEGRGFEDVEDEILQVLHELKTVIKVIGVGGGGCNTITR
MYEEGIEGAELIALNTDVQHLYYTKANRRILIGKRRTRGLGAGSLPQVGEEAARESEDEI
KKLVEGSDMVFVTCGLGGGTGTGAAPVVAEAAQEAGALTIAVVTFPFSAEGAVRRANAEA
GLERLREVADTVIVIPNDRLLEVVPNYPMQLAFKVADEILMRAVKGITELITKPALINLD
FADVRTVMEKGGVAMIGLGEASGEDKAAESVRKALKSPLLDVDVSGAKAALVNVTGGPDM
TIEEAESVIEEIYSKVDPDARIIWGAMIDPELENTMRTLIIVTGVKSPQILGRKGYPVTR
KYGIDFVR
>sp|Q9HS71|FTSZ1_HALSA Cell division protein FtsZ 1 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=ftsZ1 PE=3 SV=1
MDSIVQDAIDEAEESEDSASEPADVAGGGGDTVPTGTMTDNELEDVLQELQTNITVVGCG
GAGSNTVDRMATEGIHGADLVAANTDVQHLVDIEADTKILMGQQKTKGRGAGSLPQVGEE

test/seq_out1_gap_mafft.fasta  view on Meta::CPAN

---LEDIDYVE
>sp|Q9V2S0|FTSZ1_PYRAB Cell division protein FtsZ 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ftsZ1 PE=3 SV=1
--MLKLVENVVE-RVSAEEQ------------------K-PQEIQ----VPQSSIDEELK
KIVEQIKARIYVVGVGGAGCNTVNRMMEVGVTGAKIIAVNTDAQDLLKIKAHQKILIGKE
LTRGLGAGNDPKIGEEAAKESERELREALEGADMVFVTCGLGGGTGTGAAPVIAEMAKKM
GALTVSVVTLPFTMEGIRRAKNAEYGLKRLAKASDTVIVIPNDKLLEVAPKLPIQMAFKV
ADEILVQAVKGITELITKPGLVNLDFNDVRAVMKDGGVAMIGIGESDSEKRALEAAEQAL
NSPLLDVDISGAKGALISISG-ADVKLEEAQQIIEYVTRNVDPKAQVIWGIQLEPELEKT
IRVMVIVTGVTSRY-ITFQ--EE---------------------TPEPSEEEVPPVK---
---ID-IPEL-
>sp|O29715|FTSZ1_ARCFU Cell division protein FtsZ 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ftsZ1 PE=3 SV=1
MFMKSIVEEALA----RAEREK------------------KERIEG---RGFEDVEDEIL
QVLHELKTVIKVIGVGGGGCNTITRMYEEGIEGAELIALNTDVQHLYYTKANRRILIGKR
RTRGLGAGSLPQVGEEAARESEDEIKKLVEGSDMVFVTCGLGGGTGTGAAPVVAEAAQEA
GALTIAVVTFPFSAEGAVRRANAEAGLERLREVADTVIVIPNDRLLEVVPNYPMQLAFKV
ADEILMRAVKGITELITKPALINLDFADVRTVMEKGGVAMIGLGEASGEDKAAESVRKAL
KSPLLDVDVSGAKAALVNVTGGPDMTIEEAESVIEEIYSKVDPDARIIWGAMIDPELENT
MRTLIIVTGVKSPQILGRK--GY------------------------------PVTR---
---KYGIDFVR
>sp|Q9HS71|FTSZ1_HALSA Cell division protein FtsZ 1 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=ftsZ1 PE=3 SV=1
--MDSIVQDAID----EAEES------EDSASEPADVAGGGGDTV----PTGTMTDNELE

test/seq_out1_mafft.fasta  view on Meta::CPAN

--LEDIDYVE
>sp|Q9V2S0|FTSZ1_PYRAB Cell division protein FtsZ 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ftsZ1 PE=3 SV=1
--MLKLVENVVE-RVSAEEQ------------------K-PQEIQ----VPQSSIDEELK
KIVEQIKARIYVVGVGGAGCNTVNRMMEVGVTGAKIIAVNTDAQDLLKIKAHQKILIGKE
LTRGLGAGNDPKIGEEAAKESERELREALEGADMVFVTCGLGGGTGTGAAPVIAEMAKKM
GALTVSVVTLPFTMEGIRRAKNAEYGLKRLAKASDTVIVIPNDKLLEVAPKLPIQMAFKV
ADEILVQAVKGITELITKPGLVNLDFNDVRAVMKDGGVAMIGIGESDSEKRALEAAEQAL
NSPLLDVDISGAKGALISISG-ADVKLEEAQQIIEYVTRNVDPKAQVIWGIQLEPELEKT
IRVMVIVTGVTSRY-ITFQE-ET---PEP------------------SEEEVPPVK----
--ID-IPEL-
>sp|O29715|FTSZ1_ARCFU Cell division protein FtsZ 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ftsZ1 PE=3 SV=1
MFMKSIVEEALA----RAEREK------------------KERIEG---RGFEDVEDEIL
QVLHELKTVIKVIGVGGGGCNTITRMYEEGIEGAELIALNTDVQHLYYTKANRRILIGKR
RTRGLGAGSLPQVGEEAARESEDEIKKLVEGSDMVFVTCGLGGGTGTGAAPVVAEAAQEA
GALTIAVVTFPFSAEGAVRRANAEAGLERLREVADTVIVIPNDRLLEVVPNYPMQLAFKV
ADEILMRAVKGITELITKPALINLDFADVRTVMEKGGVAMIGLGEASGEDKAAESVRKAL
KSPLLDVDVSGAKAALVNVTGGPDMTIEEAESVIEEIYSKVDPDARIIWGAMIDPELENT
MRTLIIVTGVKSPQILGRK--GY---PVT--------------------------R----
--KYGIDFVR
>sp|Q9HS71|FTSZ1_HALSA Cell division protein FtsZ 1 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=ftsZ1 PE=3 SV=1
--MDSIVQDAID----EAEES------EDSASEPADVAGGGGDTV----PTGTMTDNELE

test/seq_profile_out.fasta  view on Meta::CPAN

>sp|Q9V2S0|FTSZ1_PYRAB Cell division protein FtsZ 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ftsZ1 PE=3 SV=1
--MLKLVENVVE-RVSAEEQ------------------K-PQEIQ----VPQSSIDEELK
KIVEQIKARIYVVGVGGAGCNTVNRMMEVGVTGAKI---------------IAVNT---D
AQDLLKIKAHQKILIGKELTRGLGAGNDPKIGEEAAKESERELREALEG------ADMVF
VTCGLGGGTGTGAAPVIAEMAKKM--GALTVSVVTLPFTMEGIRRAKNAEYGLKRLAK-A
SDTVIVIPNDKLLEVAPKLPIQMAFKVADEILVQAVKGITELITK-----PGLVNLDFND
VRAVMKD-GGVAMIGIGESD----------------------------------SEKRAL
EAAEQALNSPL-LDVDISGA--KGALISISG-ADV----KLEEAQQIIEYVTRNVDPKAQ
VIWGIQLEPELEKTIRVMVIVTGV-TSRY-ITFQE-ET---PEP----------------
--SEEEVPPVK---------ID-IPEL-----------------------
>sp|O29715|FTSZ1_ARCFU Cell division protein FtsZ 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ftsZ1 PE=3 SV=1
MFMKSIVEEALA----RAEREK------------------KERIEG---RGFEDVEDEIL
QVLHELKTVIKVIGVGGGGCNTITRMYEEGIEGAEL---------------IALNT---D
VQHLYYTKANRRILIGKRRTRGLGAGSLPQVGEEAARESEDEIKKLVEG------SDMVF
VTCGLGGGTGTGAAPVVAEAAQEA--GALTIAVVTFPFSAEGAVRRANAEAGLERLRE-V
ADTVIVIPNDRLLEVVPNYPMQLAFKVADEILMRAVKGITELITK-----PALINLDFAD
VRTVMEK-GGVAMIGLGEAS----------------------------------GEDKAA
ESVRKALKSPL-LDVDVSGA--KAALVNVTGGPDM----TIEEAESVIEEIYSKVDPDAR
IIWGAMIDPELENTMRTLIIVTGV-KSPQILGRK--GY---PVT----------------
----------R---------KYGIDFVR----------------------
>sp|Q9HS71|FTSZ1_HALSA Cell division protein FtsZ 1 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=ftsZ1 PE=3 SV=1

test/seq_profiles2_clustal.fasta  view on Meta::CPAN

>sp|Q9V2S0|FTSZ1_PYRAB Cell division protein FtsZ 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ftsZ1 PE=3 SV=1
--MLKLVENVVE-RVSAEEQ------------------K-PQEIQ----VPQSSIDEELK
KIVEQIKARIYVVGVGGAGCNTVNRMMEVGVTGAK---------------IIAVNT---D
AQDLLKIKAHQKILIGKELTRGLGAGNDPKIGEEAAKESERELREALEG------ADMVF
VTCGLGGGTGTGAAPVIAEMAKKMG--ALTVSVVTLPFTMEGIRRAKNAEYGLKRLAK-A
SDTVIVIPNDKLLEVAPKLPIQMAFKVADEILVQAVKGITELITK-----PGLVNLDFND
VRAVMKD-GGVAMIGIGESD----------------------------------SEKRAL
EAAEQALNS-----PLLDVDISGA--KGALISISG-ADV----KLEEAQQIIEYVTRNVD
PKAQVIWGIQLEPELEKTIRVMVIVTGVTS-RY-ITFQE-ET---PEP------------
------SEEEVPPVK------ID-IPEL-----------------------
>sp|O29715|FTSZ1_ARCFU Cell division protein FtsZ 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ftsZ1 PE=3 SV=1
MFMKSIVEEALA----RAEREK------------------KERIEG---RGFEDVEDEIL
QVLHELKTVIKVIGVGGGGCNTITRMYEEGIEGAE---------------LIALNT---D
VQHLYYTKANRRILIGKRRTRGLGAGSLPQVGEEAARESEDEIKKLVEG------SDMVF
VTCGLGGGTGTGAAPVVAEAAQEAG--ALTIAVVTFPFSAEGAVRRANAEAGLERLRE-V
ADTVIVIPNDRLLEVVPNYPMQLAFKVADEILMRAVKGITELITK-----PALINLDFAD
VRTVMEK-GGVAMIGLGEAS----------------------------------GEDKAA
ESVRKALKS-----PLLDVDVSGA--KAALVNVTGGPDM----TIEEAESVIEEIYSKVD
PDARIIWGAMIDPELENTMRTLIIVTGVKS-PQILGRK--GY---PVT------------
--------------R------KYGIDFVR----------------------
>sp|Q9HS71|FTSZ1_HALSA Cell division protein FtsZ 1 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=ftsZ1 PE=3 SV=1

test/seq_profiles_mafft.fasta  view on Meta::CPAN

>sp|Q9V2S0|FTSZ1_PYRAB Cell division protein FtsZ 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ftsZ1 PE=3 SV=1
--MLKLVENVVE-RVSAEEQ------------------K-PQEIQ----VPQSSIDEELK
KIVEQIKARIYVVGVGGAGCNTVNRMMEVGVTGAKI---------------IAVNT---D
AQDLLKIKAHQKILIGKELTRGLGAGNDPKIGEEAAKESERELREALEG------ADMVF
VTCGLGGGTGTGAAPVIAEMAKKM--GALTVSVVTLPFTMEGIRRAKNAEYGLKRLAK-A
SDTVIVIPNDKLLEVAPKLPIQMAFKVADEILVQAVKGITELITK-----PGLVNLDFND
VRAVMKD-GGVAMIGIGES-------------------------------D---SEKRAL
EAAEQALNSP-----LLDVDISGA--KGALISISG-ADV----KLEEAQQIIEYVTRNVD
PKAQVIWGIQLEPELEKTIRVMVIVTGV-TSRY-ITFQE-ET---PEP------------
------SEEEVPPVK----------ID-IPEL-----------------------
>sp|O29715|FTSZ1_ARCFU Cell division protein FtsZ 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ftsZ1 PE=3 SV=1
MFMKSIVEEALA----RAEREK------------------KERIEG---RGFEDVEDEIL
QVLHELKTVIKVIGVGGGGCNTITRMYEEGIEGAEL---------------IALNT---D
VQHLYYTKANRRILIGKRRTRGLGAGSLPQVGEEAARESEDEIKKLVEG------SDMVF
VTCGLGGGTGTGAAPVVAEAAQEA--GALTIAVVTFPFSAEGAVRRANAEAGLERLRE-V
ADTVIVIPNDRLLEVVPNYPMQLAFKVADEILMRAVKGITELITK-----PALINLDFAD
VRTVMEK-GGVAMIGLGEA-------------------------------S---GEDKAA
ESVRKALKSP-----LLDVDVSGA--KAALVNVTGGPDM----TIEEAESVIEEIYSKVD
PDARIIWGAMIDPELENTMRTLIIVTGV-KSPQILGRK--GY---PVT------------
--------------R----------KYGIDFVR----------------------
>sp|Q9HS71|FTSZ1_HALSA Cell division protein FtsZ 1 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=ftsZ1 PE=3 SV=1