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lib/Bio/DB/EntrezGene.pm  view on Meta::CPAN

 Title   : get_request
 Usage   : my $url = $self->get_request
 Function: HTTP::Request
 Returns : 
 Args    : %qualifiers = a hash of qualifiers (ids, format, etc)

=head2 get_Stream_by_id

  Title   : get_Stream_by_id
  Usage   : $stream = $db->get_Stream_by_id( [$gid1, $gid2] );
  Function: Gets a series of Seq objects using Gene ids
  Returns : A Bio::SeqIO stream object
  Args    : A reference to an array of Gene ids

=head2 request_format

 Title   : request_format
 Usage   : my $format = $self->request_format;
           $self->request_format($format);
 Function: Get or set sequence format retrieval

lib/Bio/DB/Query/GenBank.pm  view on Meta::CPAN

 Title   : new
 Usage   : $db = Bio::DB::Query::GenBank->new(@args)
 Function: create new query object
 Returns : new query object
 Args    : -db       database (see below for allowable values)
           -query    query string
           -mindate  minimum date to retrieve from (YYYY/MM/DD)
           -maxdate  maximum date to retrieve from (YYYY/MM/DD)
           -reldate  relative date to retrieve from (days)
           -datetype date field to use ('edat' or 'mdat')
           -ids      array ref of gids (overrides query)
           -maxids   the maximum number of IDs you wish to collect
                     (defaults to 100)
           -email    Email address; required if you want to decrease
                     delay time between queries
           -delay    Delay time (in seconds).  Note NCBI policy requires 4
                     seconds between requests unless an email is provided

This method creates a new query object.  Typically you will specify a
-db and a -query argument, possibly modified by -mindate, -maxdate, or
-reldate.  -mindate and -maxdate specify minimum and maximum dates for