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t/data/refweak.tsv  view on Meta::CPAN

CBWF01	Klebsiella	pneumoniae			IS22  Too many proteins	
CCBJ01	Salmonella	enterica	SUBSP. ENTERICA SEROVAR MANHATTAN	ENA SAMEA3158455	40 times bigger than a normal Salmonella	
CCCD01	Escherichia	coli			Fragmented and genome much larger than expected	
CCCH01	Escherichia	coli			Fragmented and genome much larger than expected	
CCCJ01	Escherichia	coli			Fragmented and genome much larger than expected	
CCCK01	Escherichia	coli			Fragmented and genome much larger than expected	
CDQN01	Escherichia	coli			Fragmented and genome much larger than expected	
CDQS01	Escherichia	coli			Fragmented and genome much larger than expected	
CDQW01	Escherichia	coli			Fragmented and genome much larger than expected	
CDRO01	Escherichia	coli			Fragmented and genome much larger than expected	
CFAX01	Streptococcus	pneumoniae			Too fragmented	
CFDG01	Streptococcus	pneumoniae	 		Too small	
CFDO01	Streptococcus	pneumoniae	 		Too small	
CFEQ01	Streptococcus	pneumoniae	 		Too big	
CFFF01	Streptococcus	pneumoniae	 		Too big	
CFFU01	Streptococcus	pneumoniae	 		Too small	
CFFY01	Streptococcus	pneumoniae	 		Too big	
CFGZ01	Streptococcus	pneumoniae			Too fragmented	
CFYQ01	Bordetella	pertussis			Too fragmented	
CFYS01	Staphylococcus	aureus			Too many contigs	
CFZH01	Bordetella	pertussis			Too fragmented	
CGCX01	Mycobacterium	tuberculosis			Too fragmented	
CGDO01	Mycobacterium	tuberculosis			Too fragmented	
CGFZ01	Bordetella	pertussis			Too fragmented	
CGWE01	Streptococcus	pneumoniae			Too fragmented	
CGWL01	Streptococcus	pneumoniae	 		Too big	
CGXO01	Streptococcus	pneumoniae	 		Too big	
CHCS01	Streptococcus	pneumoniae			Too fragmented	
CHCU01	Streptococcus	pneumoniae			Too fragmented	
CHDS01	Mycobacterium	tuberculosis			Too fragmented	
CHED01	Mycobacterium	tuberculosis			Too fragmented	
CHEE01	Mycobacterium	tuberculosis			Too fragmented	
CHHQ01	Streptococcus	pneumoniae	 		Too small	
CHIQ01	Streptococcus	pneumoniae	 		Too small	
CHKU01	Bordetella	pertussis			Too fragmented	
CHKZ01	Bordetella	pertussis			Too fragmented	
CHOP01	Streptococcus	pneumoniae	 		Too small	
CHQU01	Streptococcus	pneumoniae			Too fragmented	
CHRW01	Streptococcus	pneumoniae	 		Too big	
CHTU01	Streptococcus	pneumoniae	 		Too big	
CHVB01	Streptococcus	pneumoniae	 		Too big	
CHVD01	Streptococcus	pneumoniae	 		Too big	
CHXN01	Streptococcus	pneumoniae	 		Too Fragmented	
CIBW01	Streptococcus	pneumoniae			Too fragmented	
CIDG01	Streptococcus	pneumoniae	 		Too big	
CIDK01	Streptococcus	pneumoniae	 		Too big	
CIGT01	Bordetella	pertussis			Too fragmented	
CIGY01	Bordetella	pertussis			Too fragmented	
CIIO01	Streptococcus	pneumoniae	 		Too big	
CKLU01	Streptococcus	pneumoniae			Too fragmented	
CKMB01	Streptococcus	pneumoniae			Too fragmented	
CKMC01	Streptococcus	pneumoniae			Too fragmented	
CKMD01	Streptococcus	pneumoniae			Too fragmented	
CKME01	Streptococcus	pneumoniae			Too fragmented	
CKMG01	Streptococcus	pneumoniae			Too fragmented	
CKML01	Streptococcus	pneumoniae			Too fragmented	
CKMN01	Streptococcus	pneumoniae			Too fragmented	
CLCA01	Streptococcus	pneumoniae			Too fragmented	
CLCF01	Streptococcus	pneumoniae			Too fragmented	
CLCT01	Streptococcus	pneumoniae			Too fragmented	
CLCV01	Streptococcus	pneumoniae			Too fragmented	
CLCW01	Streptococcus	pneumoniae			Too fragmented	
CLDM01	Streptococcus	pneumoniae			Too fragmented	
CLMB01	Streptococcus	pneumoniae			Too fragmented	
CMMW01	Streptococcus	pneumoniae			Too fragmented	
CMQU01	Streptococcus	pneumoniae			Too fragmented	
CMTL01	Streptococcus	pneumoniae			Too fragmented	
CNAO01	Streptococcus	pneumoniae			Too fragmented	
CNBX01	Mycobacterium	tuberculosis			Too fragmented	
CNCN01	Mycobacterium	tuberculosis			Too fragmented	
CNCO01	Mycobacterium	tuberculosis			Too fragmented	
CNDE01	Mycobacterium	tuberculosis			Too fragmented	
CNDG01	Mycobacterium	tuberculosis			Too fragmented	
CNFP01	Mycobacterium	tuberculosis			Too fragmented	
CNFQ01	Mycobacterium	tuberculosis			Too fragmented	
CNFR01	Mycobacterium	tuberculosis			Too fragmented	
CNFS01	Mycobacterium	tuberculosis			Too fragmented	
CNFT01	Mycobacterium	tuberculosis			Too fragmented	
CNFU01	Mycobacterium	tuberculosis			Too fragmented	
CNFV01	Mycobacterium	tuberculosis			Too fragmented	
CNFW01	Mycobacterium	tuberculosis			Too fragmented	
CNGE01	Mycobacterium	tuberculosis			Too fragmented	
CNGG01	Mycobacterium	tuberculosis			Too fragmented	
CNIS01	Mycobacterium	tuberculosis			Too fragmented	
CNMV01	Mycobacterium	tuberculosis			Too fragmented	
COIL01	Mycobacterium	tuberculosis			Too fragmented	
CP002797	Escherichia	coli	UPEC ST131		See PubMed 24706808 for discussion on the quality of this genome	
CP006958	Achromobacter	xylosoxidans	NBRC15126 ATCC27061	NCBI PRJNA209573	Illumina adapter contamination	NA
CPAQ01	Mycobacterium	tuberculosis			Too fragmented	
CPMC01	Streptococcus	pneumoniae			Too fragmented	
CPMI01	Streptococcus	pneumoniae			Too fragmented	
CPMN01	Streptococcus	pneumoniae			Too fragmented	
CPNM01	Streptococcus	pneumoniae			Too fragmented	
CPOJ01	Streptococcus	pneumoniae			Too fragmented	
CPPR01	Streptococcus	pneumoniae			Too fragmented	
CPQT01	Streptococcus	pneumoniae			Too fragmented	
CPRN01	Streptococcus	pneumoniae			Too fragmented	
CPSE01	Streptococcus	pneumoniae			Too fragmented	
CPSU01	Streptococcus	pneumoniae			Too fragmented	
CPUM01	Streptococcus	pneumoniae			Too fragmented	
CPWZ01	Mycobacterium	tuberculosis			Too fragmented	
CPZG01	Mycobacterium	tuberculosis			Too fragmented	
CQPL01	Mycobacterium	tuberculosis			Too fragmented	
CQPT01	Mycobacterium	tuberculosis			Too fragmented	
CQPW01	Mycobacterium	tuberculosis			Too fragmented	
CQQC01	Mycobacterium	tuberculosis			Too fragmented	
CQTO01	Mycobacterium	tuberculosis			Too fragmented	
CRBZ01	Streptococcus	pneumoniae			Too fragmented	
CRCI01	Streptococcus	pneumoniae			Too fragmented	
CRCN01	Streptococcus	pneumoniae			Too fragmented	
CRCO01	Streptococcus	pneumoniae			Too fragmented	
CRGB01	Streptococcus	pneumoniae			Too fragmented	
CRRN01	Streptococcus	pneumoniae			Too fragmented	
CRSC01	Streptococcus	pneumoniae			Too fragmented	
CSAU01	Mycobacterium	tuberculosis			Too fragmented	
CSAV01	Mycobacterium	tuberculosis			Too fragmented	
CSAY01	Mycobacterium	tuberculosis			Too fragmented	
CSBI01	Mycobacterium	tuberculosis			Too fragmented	
CSBK01	Mycobacterium	tuberculosis			Too fragmented	
CSLY01	Bordetella	pertussis			Too fragmented	
CSMT01	Staphylococcus	aureus			Too fragmented	
CSNC01	Staphylococcus	aureus			Too fragmented	
CSPC01	Staphylococcus	haemolyticus			Too fragmented	
CSPN01	Staphylococcus	aureus			Too fragmented	
CSQX01	Bordetella	pertussis			Too fragmented	
CSST01	Staphylococcus	aureus			Too fragmented	
CSTN01	Chlamydia	trachomatis			Too fragmented	
CSTQ01	Chlamydia	trachomatis			Too fragmented	
CSTU01	Mycobacterium	abscessus			Too fragmented	
CSVM01	Mycobacterium	abscessus			Too fragmented	
CSVS01	Mycobacterium	abscessus			Too fragmented	
CSZG01	Mycobacterium	abscessus			Too fragmented	
CSZP01	Mycobacterium	abscessus			Too fragmented	
CSZS01	Mycobacterium	abscessus			Too fragmented	
CSZT01	Mycobacterium	abscessus			Too fragmented	
CTBL01	Chlamydia	trachomatis			Too fragmented	
CTRE01	Yersinia	enterocolitica			Too fragmented	
CTZB01	Staphylococcus	aureus			Too fragmented	
CTZD01	Staphylococcus	aureus			Too fragmented	
CUAH01	Staphylococcus	aureus			Too fragmented	
CUAL01	Staphylococcus	aureus			Too fragmented	
CUAN01	Staphylococcus	aureus			Too fragmented	
CUAQ01	Staphylococcus	aureus			Too fragmented	
CUBB01	Staphylococcus	aureus			Too fragmented	
CUCA01	Staphylococcus	aureus			Too fragmented	
CUCB01	Staphylococcus	aureus			Too fragmented	
CUDA01	Staphylococcus	aureus			Too fragmented	
CUDH01	Staphylococcus	aureus			Too fragmented	
CUDK01	Staphylococcus	aureus			Too fragmented	
CUEG01	Staphylococcus	aureus			Too fragmented	
CUEP01	Staphylococcus	aureus			Too fragmented	
CVKS01	Streptococcus	pneumoniae	 		Too small	
CVLR01	Streptococcus	pneumoniae			Too fragmented	
CVLS01	Streptococcus	pneumoniae	 		Too big	
CVNZ01	Chlamydia	trachomatis			More than 1 contig per expected gene	NA
CVOF01	Streptococcus	pneumoniae	 		Too big	
JPIO01	Salmonella	enterica	SUBSP. ENTERICA SEROVAR WELTEVREDEN		Too few proteins	
JSHN01	Escherichia	coli			Half expected size and highly fragmented	
JSIP01	Escherichia	coli			Half expected size and highly fragmented	
JSIZ01	Escherichia	coli			Half expected size and highly fragmented	
JSJC01	Escherichia	coli			Half expected size and highly fragmented	
JSJD01	Escherichia	coli			Half expected size and highly fragmented	
JSJH01	Escherichia	coli			Half expected size and highly fragmented	
JSJR01	Escherichia	coli			Half expected size and highly fragmented	
JSJU01	Escherichia	coli			Half expected size and highly fragmented	
JSJV01	Escherichia	coli			Half expected size and highly fragmented	
JSJY01	Escherichia	coli			Half expected size and highly fragmented	
JSKH01	Escherichia	coli			Half expected size and highly fragmented	
JSKQ01	Escherichia	coli			Half expected size and highly fragmented	
JSKV01	Escherichia	coli			Half expected size and highly fragmented	
JSKW01	Escherichia	coli			Half expected size and highly fragmented	
JSKY01	Escherichia	coli			Half expected size and highly fragmented	
JSLH01	Escherichia	coli			Half expected size and highly fragmented	
JSLM01	Escherichia	coli			Half expected size and highly fragmented	
JSLO01	Escherichia	coli			Half expected size and highly fragmented	
JSLS01	Escherichia	coli			Half expected size and highly fragmented	
JSME01	Escherichia	coli			Half expected size and highly fragmented	
JSMM01	Escherichia	coli			Half expected size and highly fragmented	
JSPL01	Escherichia	coli			Fragmented and genome much larger than expected	
JXSA01	Staphylococcus	aureus			Too many contigs	
JXSG01	Staphylococcus	aureus			Too many contigs	
JXSH01	Staphylococcus	aureus			Too many contigs	
NC_017644	Escherichia	coli	UPEC ST131		See PubMed 24706808 for discussion on the quality of this genome	
NZ_AEJH01	Salmonella	enterica	SUBSP. ENTERICA SEROVAR CHOLERAESUIS STR. SCSA50		Too many proteins	
NZ_AEJH01	Salmonella	enterica	SUBSP. ENTERICA SEROVAR CHOLERAESUIS STR. SCSA50		Number of proteins more than 50% greater than average for Salmonella enterica	
NZ_AEUK01	Salmonella	enterica	SUBSP. ENTERICA SEROVAR DUBLIN STR. SD3246		Too many proteins	
NZ_AEUL01	Salmonella	enterica	SUBSP. ENTERICA SEROVAR GALLINARUM STR. SG9		Too many proteins	
NZ_AEUL01	Salmonella	enterica	SUBSP. ENTERICA SEROVAR GALLINARUM STR. SG9		Number of proteins more than 50% greater than average for Salmonella enterica	

t/data/small_refweak.tsv  view on Meta::CPAN

accession	genus	species	sub_species_or_strain	bioproject_accession	comment	link_to_raw_data
CFAX01	Streptococcus	pneumoniae			Too fragmented	
#CFDG01	Streptococcus	pneumoniae	 		Too small		
CFEQ01	Streptococcus	pneumoniae	 		Too big