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data/bladder_cancer_GEO.txt  view on Meta::CPAN

153. Gene expression data from MGH-U3 following FGFR3 knock-down using FGFR3 siRNAs
(Submitter supplied) To better understand the molecular mechanisms underlying altered-FGFR3 oncogenic activity in bladder carcinomas, we made use of  MGH-U3 cell lines, which were derived from a human bladder tumor and endogenously expressed a mutate...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15236 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84731/
Series		Accession: GSE84731	ID: 200084731

154. Next generation sequencing analysis of potential target genes of lncRNA BLACAT2
(Submitter supplied) Next generation sequencing analysis was performed to identify potential target genes of lncRNA BLACAT2.  Purified total RNA (3 μg) was used to deplete ribosomal RNA with Ribo-Zero rRNA Removal Kits (MRZMB126,Epicentre). Poly(A)+...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 3 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101287/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA393943
Series		Accession: GSE101287	ID: 200101287

155. Gene expression signatures for bladder cancer tissues and normal adjacent tissues.
(Submitter supplied) To identify aberrantly expressed long intergenic noncoding RNAs (lincRNAs) in muscle-invasive bladder cancer tissues compared with normal adjacent tissues, we have employed microarray expression profiling as a discovery platform ...
Organism:	Homo sapiens

data/bladder_cancer_GEO.txt  view on Meta::CPAN

200. Expression data from rat orthotopic bladder cancer
(Submitter supplied) In the development and progression of bladder cancer, there are many genetic changes. We established a SD rat orthotopic bladder cancer model through intravesical instillation of N-methyl-nitrosourea and pathologic diagnosis is b...
Organism:	Rattus norvegicus
Type:		Expression profiling by array
Platform: GPL1355 9 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76702/
Series		Accession: GSE76702	ID: 200076702

201. Cell-free DNA comprises an in vivo, genome-wide nucleosome footprint that informs its tissue(s)-of-origin
(Submitter supplied) Nucleosomes are the basic unit of packaging of eukaryotic chromatin, and nucleosome positioning can differ substantially between cell types. Here, we sequence 14.5 billion plasma-borne cell-free DNA (cfDNA) fragments (700-fold co...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL11154 60 Samples
FTP download: GEO (BB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71378/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA291063
Series		Accession: GSE71378	ID: 200071378

202. Expression data from UMUC3 cells transduced with non-targeted shRNA and shRNA specific to AGL
(Submitter supplied) Loss of Amylo-alpha-1-6-glucosidase-4-alpha-glucanotransferase (AGL) drives bladder cancer growth. Low AGL expression predicts poor patient outcome. Currently no specific therapeutically tractable targets/pathways exist that coul...
Organism:	Homo sapiens