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lib/GO/AnnotationProvider/AnnotationParser.pm  view on Meta::CPAN

 7.  An additional checker, that uses an AnnotationProvider in
     conjunction with an OntologyProvider, would be useful, that
     checks that some of the annotations themselves are valid, ie
     that no entities are annotated to the 'unknown' node in a
     particular aspect, and also to another node within that same
     aspect.  Can annotations be redundant? ie, if an entity is
     annotated to a node, and an ancestor of the node, is that
     annotation redundant?  Does it depend on the evidence codes and
     references.  Or are such annotations reinforcing?  These things
     are useful to consider when formulating the confidence which can
     be attributed to an annotation.

=cut

use strict;
use warnings;
use diagnostics;

use Storable qw (nstore);
use IO::File;