Algorithm-TrunkClassifier
view release on metacpan or search on metacpan
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
grok_number() NEED_grok_number NEED_grok_number_GLOBAL
grok_numeric_radix() NEED_grok_numeric_radix NEED_grok_numeric_radix_GLOBAL
grok_oct() NEED_grok_oct NEED_grok_oct_GLOBAL
load_module() NEED_load_module NEED_load_module_GLOBAL
my_snprintf() NEED_my_snprintf NEED_my_snprintf_GLOBAL
my_strlcat() NEED_my_strlcat NEED_my_strlcat_GLOBAL
my_strlcpy() NEED_my_strlcpy NEED_my_strlcpy_GLOBAL
newCONSTSUB() NEED_newCONSTSUB NEED_newCONSTSUB_GLOBAL
newRV_noinc() NEED_newRV_noinc NEED_newRV_noinc_GLOBAL
newSVpvn_share() NEED_newSVpvn_share NEED_newSVpvn_share_GLOBAL
sv_2pv_flags() NEED_sv_2pv_flags NEED_sv_2pv_flags_GLOBAL
sv_2pvbyte() NEED_sv_2pvbyte NEED_sv_2pvbyte_GLOBAL
sv_catpvf_mg() NEED_sv_catpvf_mg NEED_sv_catpvf_mg_GLOBAL
sv_catpvf_mg_nocontext() NEED_sv_catpvf_mg_nocontext NEED_sv_catpvf_mg_nocontext_GLOBAL
sv_pvn_force_flags() NEED_sv_pvn_force_flags NEED_sv_pvn_force_flags_GLOBAL
sv_setpvf_mg() NEED_sv_setpvf_mg NEED_sv_setpvf_mg_GLOBAL
sv_setpvf_mg_nocontext() NEED_sv_setpvf_mg_nocontext NEED_sv_setpvf_mg_nocontext_GLOBAL
vload_module() NEED_vload_module NEED_vload_module_GLOBAL
vnewSVpvf() NEED_vnewSVpvf NEED_vnewSVpvf_GLOBAL
warner() NEED_warner NEED_warner_GLOBAL
To avoid namespace conflicts, you can change the namespace of the
explicitly exported functions / variables using the C<DPPP_NAMESPACE>
macro. Just C<#define> the macro before including C<ppport.h>:
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
SvPOK_off|||
SvPOK_only_UTF8||5.006000|
SvPOK_only|||
SvPOK_on|||
SvPOKp|||
SvPOK|||
SvPVX_const|5.009003||p
SvPVX_mutable|5.009003||p
SvPVX|||
SvPV_const|5.009003||p
SvPV_flags_const_nolen|5.009003||p
SvPV_flags_const|5.009003||p
SvPV_flags_mutable|5.009003||p
SvPV_flags|5.007002||p
SvPV_force_flags_mutable|5.009003||p
SvPV_force_flags_nolen|5.009003||p
SvPV_force_flags|5.007002||p
SvPV_force_mutable|5.009003||p
SvPV_force_nolen|5.009003||p
SvPV_force_nomg_nolen|5.009003||p
SvPV_force_nomg|5.007002||p
SvPV_force|||p
SvPV_mutable|5.009003||p
SvPV_nolen_const|5.009003||p
SvPV_nolen|5.006000||p
SvPV_nomg_const_nolen|5.009003||p
SvPV_nomg_const|5.009003||p
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
form||5.004000|v
fp_dup|||
fprintf_nocontext|||vn
free_global_struct|||
free_tied_hv_pool|||
free_tmps|||
gen_constant_list|||
get_arena|||
get_av|5.006000||p
get_context||5.006000|n
get_cvn_flags||5.009005|
get_cv|5.006000||p
get_db_sub|||
get_debug_opts|||
get_hash_seed|||
get_hv|5.006000||p
get_mstats|||
get_no_modify|||
get_num|||
get_op_descs||5.005000|
get_op_names||5.005000|
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
gv_IOadd|||
gv_SVadd|||
gv_autoload4||5.004000|
gv_check|||
gv_const_sv||5.009003|
gv_dump||5.006000|
gv_efullname3||5.004000|
gv_efullname4||5.006001|
gv_efullname|||
gv_ename|||
gv_fetchfile_flags||5.009005|
gv_fetchfile|||
gv_fetchmeth_autoload||5.007003|
gv_fetchmethod_autoload||5.004000|
gv_fetchmethod|||
gv_fetchmeth|||
gv_fetchpvn_flags||5.009002|
gv_fetchpv|||
gv_fetchsv||5.009002|
gv_fullname3||5.004000|
gv_fullname4||5.006001|
gv_fullname|||
gv_handler||5.007001|
gv_init_sv|||
gv_init|||
gv_name_set||5.009004|
gv_stashpvn|5.004000||p
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
hv_exists_ent||5.004000|
hv_exists|||
hv_fetch_common|||
hv_fetch_ent||5.004000|
hv_fetchs|5.009003||p
hv_fetch|||
hv_free_ent||5.004000|
hv_iterinit|||
hv_iterkeysv||5.004000|
hv_iterkey|||
hv_iternext_flags||5.008000|
hv_iternextsv|||
hv_iternext|||
hv_iterval|||
hv_kill_backrefs|||
hv_ksplit||5.004000|
hv_magic_check|||n
hv_magic_uvar_xkey|||
hv_magic|||
hv_name_set||5.009003|
hv_notallowed|||
hv_placeholders_get||5.009003|
hv_placeholders_p||5.009003|
hv_placeholders_set||5.009003|
hv_riter_p||5.009003|
hv_riter_set||5.009003|
hv_scalar||5.009001|
hv_store_ent||5.004000|
hv_store_flags||5.008000|
hv_stores|5.009004||p
hv_store|||
hv_undef|||
ibcmp_locale||5.004000|
ibcmp_utf8||5.007003|
ibcmp|||
incl_perldb|||
incline|||
incpush_if_exists|||
incpush|||
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
newSVpvs|5.009003||p
newSVpv|||
newSVrv|||
newSVsv|||
newSVuv|5.006000||p
newSV|||
newTOKEN|||
newUNOP|||
newWHENOP||5.009003|
newWHILEOP||5.009003|
newXS_flags||5.009004|
newXSproto||5.006000|
newXS||5.006000|
new_collate||5.006000|
new_constant|||
new_ctype||5.006000|
new_he|||
new_logop|||
new_numeric||5.006000|
new_stackinfo||5.005000|
new_version||5.009000|
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
perl_alloc|||n
perl_clone_using|||n
perl_clone|||n
perl_construct|||n
perl_destruct||5.007003|n
perl_free|||n
perl_parse||5.006000|n
perl_run|||n
pidgone|||
pm_description|||
pmflag|||
pmop_dump||5.006000|
pmop_xmldump|||
pmruntime|||
pmtrans|||
pop_scope|||
pregcomp||5.009005|
pregexec|||
pregfree|||
prepend_elem|||
prepend_madprops|||
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
reg_stringify||5.009005|
reg_temp_copy|||
reganode|||
regatom|||
regbranch|||
regclass_swash||5.009004|
regclass|||
regcppop|||
regcppush|||
regcurly|||n
regdump_extflags|||
regdump||5.005000|
regdupe_internal|||
regexec_flags||5.005000|
regfree_internal||5.009005|
reghop3|||n
reghop4|||n
reghopmaybe3|||n
reginclass|||
reginitcolors||5.006000|
reginsert|||
regmatch|||
regnext||5.005000|
regpiece|||
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
save_delete|||
save_destructor_x||5.006000|
save_destructor||5.006000|
save_freeop|||
save_freepv|||
save_freesv|||
save_generic_pvref||5.006001|
save_generic_svref||5.005030|
save_gp||5.004000|
save_hash|||
save_hek_flags|||n
save_helem||5.004050|
save_hints||5.005000|
save_hptr|||
save_int|||
save_item|||
save_iv||5.005000|
save_lines|||
save_list|||
save_long|||
save_magic|||
save_mortalizesv||5.007001|
save_nogv|||
save_op|||
save_padsv||5.007001|
save_pptr|||
save_re_context||5.006000|
save_scalar_at|||
save_scalar|||
save_set_svflags||5.009000|
save_shared_pvref||5.007003|
save_sptr|||
save_svref|||
save_vptr||5.006000|
savepvn|||
savepvs||5.009003|
savepv|||
savesharedpvn||5.009005|
savesharedpv||5.007003|
savestack_grow_cnt||5.008001|
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
sequence_num|||
sequence_tail|||
sequence|||
set_context||5.006000|n
set_csh|||
set_numeric_local||5.006000|
set_numeric_radix||5.006000|
set_numeric_standard||5.006000|
setdefout|||
setenv_getix|||
share_hek_flags|||
share_hek||5.004000|
si_dup|||
sighandler|||n
simplify_sort|||
skipspace0|||
skipspace1|||
skipspace2|||
skipspace|||
softref2xv|||
sortcv_stacked|||
sortcv_xsub|||
sortcv|||
sortsv_flags||5.009003|
sortsv||5.007003|
space_join_names_mortal|||
ss_dup|||
stack_grow|||
start_force|||
start_glob|||
start_subparse||5.004000|
stashpv_hvname_match||5.009005|
stdize_locale|||
strEQ|||
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
study_chunk|||
sub_crush_depth|||
sublex_done|||
sublex_push|||
sublex_start|||
sv_2bool|||
sv_2cv|||
sv_2io|||
sv_2iuv_common|||
sv_2iuv_non_preserve|||
sv_2iv_flags||5.009001|
sv_2iv|||
sv_2mortal|||
sv_2nv|||
sv_2pv_flags|5.007002||p
sv_2pv_nolen|5.006000||p
sv_2pvbyte_nolen|5.006000||p
sv_2pvbyte|5.006000||p
sv_2pvutf8_nolen||5.006000|
sv_2pvutf8||5.006000|
sv_2pv|||
sv_2uv_flags||5.009001|
sv_2uv|5.004000||p
sv_add_arena|||
sv_add_backref|||
sv_backoff|||
sv_bless|||
sv_cat_decode||5.008001|
sv_catpv_mg|5.004050||p
sv_catpvf_mg_nocontext|||pvn
sv_catpvf_mg|5.006000|5.004000|pv
sv_catpvf_nocontext|||vn
sv_catpvf||5.004000|v
sv_catpvn_flags||5.007002|
sv_catpvn_mg|5.004050||p
sv_catpvn_nomg|5.007002||p
sv_catpvn|||
sv_catpvs|5.009003||p
sv_catpv|||
sv_catsv_flags||5.007002|
sv_catsv_mg|5.004050||p
sv_catsv_nomg|5.007002||p
sv_catsv|||
sv_catxmlpvn|||
sv_catxmlsv|||
sv_chop|||
sv_clean_all|||
sv_clean_objs|||
sv_clear|||
sv_cmp_locale||5.004000|
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
sv_compile_2op||5.008001|
sv_copypv||5.007003|
sv_dec|||
sv_del_backref|||
sv_derived_from||5.004000|
sv_does||5.009004|
sv_dump|||
sv_dup|||
sv_eq|||
sv_exp_grow|||
sv_force_normal_flags||5.007001|
sv_force_normal||5.006000|
sv_free2|||
sv_free_arenas|||
sv_free|||
sv_gets||5.004000|
sv_grow|||
sv_i_ncmp|||
sv_inc|||
sv_insert|||
sv_isa|||
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
sv_peek||5.005000|
sv_pos_b2u_midway|||
sv_pos_b2u||5.006000|
sv_pos_u2b_cached|||
sv_pos_u2b_forwards|||n
sv_pos_u2b_midway|||n
sv_pos_u2b||5.006000|
sv_pvbyten_force||5.006000|
sv_pvbyten||5.006000|
sv_pvbyte||5.006000|
sv_pvn_force_flags|5.007002||p
sv_pvn_force|||
sv_pvn_nomg|5.007003||p
sv_pvn|||
sv_pvutf8n_force||5.006000|
sv_pvutf8n||5.006000|
sv_pvutf8||5.006000|
sv_pv||5.006000|
sv_recode_to_utf8||5.007003|
sv_reftype|||
sv_release_COW|||
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
sv_setpvn_mg|5.004050||p
sv_setpvn|||
sv_setpvs|5.009004||p
sv_setpv|||
sv_setref_iv|||
sv_setref_nv|||
sv_setref_pvn|||
sv_setref_pv|||
sv_setref_uv||5.007001|
sv_setsv_cow|||
sv_setsv_flags||5.007002|
sv_setsv_mg|5.004050||p
sv_setsv_nomg|5.007002||p
sv_setsv|||
sv_setuv_mg|5.004050||p
sv_setuv|5.004000||p
sv_tainted||5.004000|
sv_taint||5.004000|
sv_true||5.005000|
sv_unglob|||
sv_uni_display||5.007003|
sv_unmagic|||
sv_unref_flags||5.007001|
sv_unref|||
sv_untaint||5.004000|
sv_upgrade|||
sv_usepvn_flags||5.009004|
sv_usepvn_mg|5.004050||p
sv_usepvn|||
sv_utf8_decode||5.006000|
sv_utf8_downgrade||5.006000|
sv_utf8_encode||5.006000|
sv_utf8_upgrade_flags||5.007002|
sv_utf8_upgrade||5.007001|
sv_uv|5.005000||p
sv_vcatpvf_mg|5.006000|5.004000|p
sv_vcatpvfn||5.004000|
sv_vcatpvf|5.006000|5.004000|p
sv_vsetpvf_mg|5.006000|5.004000|p
sv_vsetpvfn||5.004000|
sv_vsetpvf|5.006000|5.004000|p
sv_xmlpeek|||
svtype|||
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
utf8_distance||5.006000|
utf8_hop||5.006000|
utf8_length||5.007001|
utf8_mg_pos_cache_update|||
utf8_to_bytes||5.006001|
utf8_to_uvchr||5.007001|
utf8_to_uvuni||5.007001|
utf8n_to_uvchr|||
utf8n_to_uvuni||5.007001|
utilize|||
uvchr_to_utf8_flags||5.007003|
uvchr_to_utf8|||
uvuni_to_utf8_flags||5.007003|
uvuni_to_utf8||5.007001|
validate_suid|||
varname|||
vcmp||5.009000|
vcroak||5.006000|
vdeb||5.007003|
vdie_common|||
vdie_croak_common|||
vdie|||
vform||5.006000|
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
}
$count or print "Found no API matching '$opt{'api-info'}'.";
print "\n";
exit 0;
}
if (exists $opt{'list-provided'}) {
my $f;
for $f (sort { lc $a cmp lc $b } keys %API) {
next unless $API{$f}{provided};
my @flags;
push @flags, 'explicit' if exists $need{$f};
push @flags, 'depend' if exists $depends{$f};
push @flags, 'hint' if exists $hints{$f};
push @flags, 'warning' if exists $warnings{$f};
my $flags = @flags ? ' ['.join(', ', @flags).']' : '';
print "$f$flags\n";
}
exit 0;
}
my @files;
my @srcext = qw( .xs .c .h .cc .cpp -c.inc -xs.inc );
my $srcext = join '|', map { quotemeta $_ } @srcext;
if (@ARGV) {
my %seen;
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
croak(SvPVx(GvSV(errgv), na));
return sv;
}
#endif
#endif
#ifndef vload_module
#if defined(NEED_vload_module)
static void DPPP_(my_vload_module)(U32 flags, SV *name, SV *ver, va_list *args);
static
#else
extern void DPPP_(my_vload_module)(U32 flags, SV *name, SV *ver, va_list *args);
#endif
#ifdef vload_module
# undef vload_module
#endif
#define vload_module(a,b,c,d) DPPP_(my_vload_module)(aTHX_ a,b,c,d)
#define Perl_vload_module DPPP_(my_vload_module)
#if defined(NEED_vload_module) || defined(NEED_vload_module_GLOBAL)
void
DPPP_(my_vload_module)(U32 flags, SV *name, SV *ver, va_list *args)
{
dTHR;
dVAR;
OP *veop, *imop;
OP * const modname = newSVOP(OP_CONST, 0, name);
/* 5.005 has a somewhat hacky force_normal that doesn't croak on
SvREADONLY() if PL_compling is true. Current perls take care in
ck_require() to correctly turn off SvREADONLY before calling
force_normal_flags(). This seems a better fix than fudging PL_compling
*/
SvREADONLY_off(((SVOP*)modname)->op_sv);
modname->op_private |= OPpCONST_BARE;
if (ver) {
veop = newSVOP(OP_CONST, 0, ver);
}
else
veop = NULL;
if (flags & PERL_LOADMOD_NOIMPORT) {
imop = sawparens(newNULLLIST());
}
else if (flags & PERL_LOADMOD_IMPORT_OPS) {
imop = va_arg(*args, OP*);
}
else {
SV *sv;
imop = NULL;
sv = va_arg(*args, SV*);
while (sv) {
imop = append_elem(OP_LIST, imop, newSVOP(OP_CONST, 0, sv));
sv = va_arg(*args, SV*);
}
}
{
const line_t ocopline = PL_copline;
COP * const ocurcop = PL_curcop;
const int oexpect = PL_expect;
#if (PERL_BCDVERSION >= 0x5004000)
utilize(!(flags & PERL_LOADMOD_DENY), start_subparse(FALSE, 0),
veop, modname, imop);
#else
utilize(!(flags & PERL_LOADMOD_DENY), start_subparse(),
modname, imop);
#endif
PL_expect = oexpect;
PL_copline = ocopline;
PL_curcop = ocurcop;
}
}
#endif
#endif
#ifndef load_module
#if defined(NEED_load_module)
static void DPPP_(my_load_module)(U32 flags, SV *name, SV *ver, ...);
static
#else
extern void DPPP_(my_load_module)(U32 flags, SV *name, SV *ver, ...);
#endif
#ifdef load_module
# undef load_module
#endif
#define load_module DPPP_(my_load_module)
#define Perl_load_module DPPP_(my_load_module)
#if defined(NEED_load_module) || defined(NEED_load_module_GLOBAL)
void
DPPP_(my_load_module)(U32 flags, SV *name, SV *ver, ...)
{
va_list args;
va_start(args, ver);
vload_module(flags, name, ver, &args);
va_end(args);
}
#endif
#endif
#ifndef newRV_inc
# define newRV_inc(sv) newRV(sv) /* Replace */
#endif
#ifndef newRV_noinc
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
#ifndef SvREFCNT_inc_void_NN
# define SvREFCNT_inc_void_NN(sv) (void)(++SvREFCNT((SV*)(sv)))
#endif
#ifndef SvREFCNT_inc_simple_void_NN
# define SvREFCNT_inc_simple_void_NN(sv) (void)(++SvREFCNT((SV*)(sv)))
#endif
/* Backwards compatibility stuff... :-( */
#if !defined(NEED_sv_2pv_flags) && defined(NEED_sv_2pv_nolen)
# define NEED_sv_2pv_flags
#endif
#if !defined(NEED_sv_2pv_flags_GLOBAL) && defined(NEED_sv_2pv_nolen_GLOBAL)
# define NEED_sv_2pv_flags_GLOBAL
#endif
/* Hint: sv_2pv_nolen
* Use the SvPV_nolen() or SvPV_nolen_const() macros instead of sv_2pv_nolen().
*/
#ifndef sv_2pv_nolen
# define sv_2pv_nolen(sv) SvPV_nolen(sv)
#endif
#ifdef SvPVbyte
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
#ifndef SV_HAS_TRAILING_NUL
# define SV_HAS_TRAILING_NUL 0
#endif
#ifndef SV_COW_SHARED_HASH_KEYS
# define SV_COW_SHARED_HASH_KEYS 0
#endif
#if (PERL_BCDVERSION < 0x5007002)
#if defined(NEED_sv_2pv_flags)
static char * DPPP_(my_sv_2pv_flags)(pTHX_ SV * sv, STRLEN * lp, I32 flags);
static
#else
extern char * DPPP_(my_sv_2pv_flags)(pTHX_ SV * sv, STRLEN * lp, I32 flags);
#endif
#ifdef sv_2pv_flags
# undef sv_2pv_flags
#endif
#define sv_2pv_flags(a,b,c) DPPP_(my_sv_2pv_flags)(aTHX_ a,b,c)
#define Perl_sv_2pv_flags DPPP_(my_sv_2pv_flags)
#if defined(NEED_sv_2pv_flags) || defined(NEED_sv_2pv_flags_GLOBAL)
char *
DPPP_(my_sv_2pv_flags)(pTHX_ SV *sv, STRLEN *lp, I32 flags)
{
STRLEN n_a = (STRLEN) flags;
return sv_2pv(sv, lp ? lp : &n_a);
}
#endif
#if defined(NEED_sv_pvn_force_flags)
static char * DPPP_(my_sv_pvn_force_flags)(pTHX_ SV * sv, STRLEN * lp, I32 flags);
static
#else
extern char * DPPP_(my_sv_pvn_force_flags)(pTHX_ SV * sv, STRLEN * lp, I32 flags);
#endif
#ifdef sv_pvn_force_flags
# undef sv_pvn_force_flags
#endif
#define sv_pvn_force_flags(a,b,c) DPPP_(my_sv_pvn_force_flags)(aTHX_ a,b,c)
#define Perl_sv_pvn_force_flags DPPP_(my_sv_pvn_force_flags)
#if defined(NEED_sv_pvn_force_flags) || defined(NEED_sv_pvn_force_flags_GLOBAL)
char *
DPPP_(my_sv_pvn_force_flags)(pTHX_ SV *sv, STRLEN *lp, I32 flags)
{
STRLEN n_a = (STRLEN) flags;
return sv_pvn_force(sv, lp ? lp : &n_a);
}
#endif
#endif
#ifndef SvPV_const
# define SvPV_const(sv, lp) SvPV_flags_const(sv, lp, SV_GMAGIC)
#endif
#ifndef SvPV_mutable
# define SvPV_mutable(sv, lp) SvPV_flags_mutable(sv, lp, SV_GMAGIC)
#endif
#ifndef SvPV_flags
# define SvPV_flags(sv, lp, flags) \
((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \
? ((lp = SvCUR(sv)), SvPVX(sv)) : sv_2pv_flags(sv, &lp, flags))
#endif
#ifndef SvPV_flags_const
# define SvPV_flags_const(sv, lp, flags) \
((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \
? ((lp = SvCUR(sv)), SvPVX_const(sv)) : \
(const char*) sv_2pv_flags(sv, &lp, flags|SV_CONST_RETURN))
#endif
#ifndef SvPV_flags_const_nolen
# define SvPV_flags_const_nolen(sv, flags) \
((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \
? SvPVX_const(sv) : \
(const char*) sv_2pv_flags(sv, 0, flags|SV_CONST_RETURN))
#endif
#ifndef SvPV_flags_mutable
# define SvPV_flags_mutable(sv, lp, flags) \
((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \
? ((lp = SvCUR(sv)), SvPVX_mutable(sv)) : \
sv_2pv_flags(sv, &lp, flags|SV_MUTABLE_RETURN))
#endif
#ifndef SvPV_force
# define SvPV_force(sv, lp) SvPV_force_flags(sv, lp, SV_GMAGIC)
#endif
#ifndef SvPV_force_nolen
# define SvPV_force_nolen(sv) SvPV_force_flags_nolen(sv, SV_GMAGIC)
#endif
#ifndef SvPV_force_mutable
# define SvPV_force_mutable(sv, lp) SvPV_force_flags_mutable(sv, lp, SV_GMAGIC)
#endif
#ifndef SvPV_force_nomg
# define SvPV_force_nomg(sv, lp) SvPV_force_flags(sv, lp, 0)
#endif
#ifndef SvPV_force_nomg_nolen
# define SvPV_force_nomg_nolen(sv) SvPV_force_flags_nolen(sv, 0)
#endif
#ifndef SvPV_force_flags
# define SvPV_force_flags(sv, lp, flags) \
((SvFLAGS(sv) & (SVf_POK|SVf_THINKFIRST)) == SVf_POK \
? ((lp = SvCUR(sv)), SvPVX(sv)) : sv_pvn_force_flags(sv, &lp, flags))
#endif
#ifndef SvPV_force_flags_nolen
# define SvPV_force_flags_nolen(sv, flags) \
((SvFLAGS(sv) & (SVf_POK|SVf_THINKFIRST)) == SVf_POK \
? SvPVX(sv) : sv_pvn_force_flags(sv, 0, flags))
#endif
#ifndef SvPV_force_flags_mutable
# define SvPV_force_flags_mutable(sv, lp, flags) \
((SvFLAGS(sv) & (SVf_POK|SVf_THINKFIRST)) == SVf_POK \
? ((lp = SvCUR(sv)), SvPVX_mutable(sv)) \
: sv_pvn_force_flags(sv, &lp, flags|SV_MUTABLE_RETURN))
#endif
#ifndef SvPV_nolen
# define SvPV_nolen(sv) \
((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \
? SvPVX(sv) : sv_2pv_flags(sv, 0, SV_GMAGIC))
#endif
#ifndef SvPV_nolen_const
# define SvPV_nolen_const(sv) \
((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \
? SvPVX_const(sv) : sv_2pv_flags(sv, 0, SV_GMAGIC|SV_CONST_RETURN))
#endif
#ifndef SvPV_nomg
# define SvPV_nomg(sv, lp) SvPV_flags(sv, lp, 0)
#endif
#ifndef SvPV_nomg_const
# define SvPV_nomg_const(sv, lp) SvPV_flags_const(sv, lp, 0)
#endif
#ifndef SvPV_nomg_const_nolen
# define SvPV_nomg_const_nolen(sv) SvPV_flags_const_nolen(sv, 0)
#endif
#ifndef SvMAGIC_set
# define SvMAGIC_set(sv, val) \
STMT_START { assert(SvTYPE(sv) >= SVt_PVMG); \
(((XPVMG*) SvANY(sv))->xmg_magic = (val)); } STMT_END
#endif
#if (PERL_BCDVERSION < 0x5009003)
#ifndef SvPVX_const
# define SvPVX_const(sv) ((const char*) (0 + SvPVX(sv)))
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
if (sawinf) {
numtype &= IS_NUMBER_NEG; /* Keep track of sign */
numtype |= IS_NUMBER_INFINITY | IS_NUMBER_NOT_INT;
} else if (sawnan) {
numtype &= IS_NUMBER_NEG; /* Keep track of sign */
numtype |= IS_NUMBER_NAN | IS_NUMBER_NOT_INT;
} else if (s < send) {
/* we can have an optional exponent part */
if (*s == 'e' || *s == 'E') {
/* The only flag we keep is sign. Blow away any "it's UV" */
numtype &= IS_NUMBER_NEG;
numtype |= IS_NUMBER_NOT_INT;
s++;
if (s < send && (*s == '-' || *s == '+'))
s++;
if (s < send && isDIGIT(*s)) {
do {
s++;
} while (s < send && isDIGIT(*s));
}
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
#endif
/*
* The grok_* routines have been modified to use warn() instead of
* Perl_warner(). Also, 'hexdigit' was the former name of PL_hexdigit,
* which is why the stack variable has been renamed to 'xdigit'.
*/
#ifndef grok_bin
#if defined(NEED_grok_bin)
static UV DPPP_(my_grok_bin)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result);
static
#else
extern UV DPPP_(my_grok_bin)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result);
#endif
#ifdef grok_bin
# undef grok_bin
#endif
#define grok_bin(a,b,c,d) DPPP_(my_grok_bin)(aTHX_ a,b,c,d)
#define Perl_grok_bin DPPP_(my_grok_bin)
#if defined(NEED_grok_bin) || defined(NEED_grok_bin_GLOBAL)
UV
DPPP_(my_grok_bin)(pTHX_ const char *start, STRLEN *len_p, I32 *flags, NV *result)
{
const char *s = start;
STRLEN len = *len_p;
UV value = 0;
NV value_nv = 0;
const UV max_div_2 = UV_MAX / 2;
bool allow_underscores = *flags & PERL_SCAN_ALLOW_UNDERSCORES;
bool overflowed = FALSE;
if (!(*flags & PERL_SCAN_DISALLOW_PREFIX)) {
/* strip off leading b or 0b.
for compatibility silently suffer "b" and "0b" as valid binary
numbers. */
if (len >= 1) {
if (s[0] == 'b') {
s++;
len--;
}
else if (len >= 2 && s[0] == '0' && s[1] == 'b') {
s+=2;
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
value_nv += (NV)(bit - '0');
continue;
}
if (bit == '_' && len && allow_underscores && (bit = s[1])
&& (bit == '0' || bit == '1'))
{
--len;
++s;
goto redo;
}
if (!(*flags & PERL_SCAN_SILENT_ILLDIGIT))
warn("Illegal binary digit '%c' ignored", *s);
break;
}
if ( ( overflowed && value_nv > 4294967295.0)
#if UVSIZE > 4
|| (!overflowed && value > 0xffffffff )
#endif
) {
warn("Binary number > 0b11111111111111111111111111111111 non-portable");
}
*len_p = s - start;
if (!overflowed) {
*flags = 0;
return value;
}
*flags = PERL_SCAN_GREATER_THAN_UV_MAX;
if (result)
*result = value_nv;
return UV_MAX;
}
#endif
#endif
#ifndef grok_hex
#if defined(NEED_grok_hex)
static UV DPPP_(my_grok_hex)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result);
static
#else
extern UV DPPP_(my_grok_hex)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result);
#endif
#ifdef grok_hex
# undef grok_hex
#endif
#define grok_hex(a,b,c,d) DPPP_(my_grok_hex)(aTHX_ a,b,c,d)
#define Perl_grok_hex DPPP_(my_grok_hex)
#if defined(NEED_grok_hex) || defined(NEED_grok_hex_GLOBAL)
UV
DPPP_(my_grok_hex)(pTHX_ const char *start, STRLEN *len_p, I32 *flags, NV *result)
{
const char *s = start;
STRLEN len = *len_p;
UV value = 0;
NV value_nv = 0;
const UV max_div_16 = UV_MAX / 16;
bool allow_underscores = *flags & PERL_SCAN_ALLOW_UNDERSCORES;
bool overflowed = FALSE;
const char *xdigit;
if (!(*flags & PERL_SCAN_DISALLOW_PREFIX)) {
/* strip off leading x or 0x.
for compatibility silently suffer "x" and "0x" as valid hex numbers.
*/
if (len >= 1) {
if (s[0] == 'x') {
s++;
len--;
}
else if (len >= 2 && s[0] == '0' && s[1] == 'x') {
s+=2;
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
value_nv += (NV)((xdigit - PL_hexdigit) & 15);
continue;
}
if (*s == '_' && len && allow_underscores && s[1]
&& (xdigit = strchr((char *) PL_hexdigit, s[1])))
{
--len;
++s;
goto redo;
}
if (!(*flags & PERL_SCAN_SILENT_ILLDIGIT))
warn("Illegal hexadecimal digit '%c' ignored", *s);
break;
}
if ( ( overflowed && value_nv > 4294967295.0)
#if UVSIZE > 4
|| (!overflowed && value > 0xffffffff )
#endif
) {
warn("Hexadecimal number > 0xffffffff non-portable");
}
*len_p = s - start;
if (!overflowed) {
*flags = 0;
return value;
}
*flags = PERL_SCAN_GREATER_THAN_UV_MAX;
if (result)
*result = value_nv;
return UV_MAX;
}
#endif
#endif
#ifndef grok_oct
#if defined(NEED_grok_oct)
static UV DPPP_(my_grok_oct)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result);
static
#else
extern UV DPPP_(my_grok_oct)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result);
#endif
#ifdef grok_oct
# undef grok_oct
#endif
#define grok_oct(a,b,c,d) DPPP_(my_grok_oct)(aTHX_ a,b,c,d)
#define Perl_grok_oct DPPP_(my_grok_oct)
#if defined(NEED_grok_oct) || defined(NEED_grok_oct_GLOBAL)
UV
DPPP_(my_grok_oct)(pTHX_ const char *start, STRLEN *len_p, I32 *flags, NV *result)
{
const char *s = start;
STRLEN len = *len_p;
UV value = 0;
NV value_nv = 0;
const UV max_div_8 = UV_MAX / 8;
bool allow_underscores = *flags & PERL_SCAN_ALLOW_UNDERSCORES;
bool overflowed = FALSE;
for (; len-- && *s; s++) {
/* gcc 2.95 optimiser not smart enough to figure that this subtraction
out front allows slicker code. */
int digit = *s - '0';
if (digit >= 0 && digit <= 7) {
/* Write it in this wonky order with a goto to attempt to get the
compiler to make the common case integer-only loop pretty tight.
*/
Algorithm/TrunkClassifier/ppport.h view on Meta::CPAN
&& (digit = s[1] - '0') && (digit >= 0 && digit <= 7))
{
--len;
++s;
goto redo;
}
/* Allow \octal to work the DWIM way (that is, stop scanning
* as soon as non-octal characters are seen, complain only iff
* someone seems to want to use the digits eight and nine). */
if (digit == 8 || digit == 9) {
if (!(*flags & PERL_SCAN_SILENT_ILLDIGIT))
warn("Illegal octal digit '%c' ignored", *s);
}
break;
}
if ( ( overflowed && value_nv > 4294967295.0)
#if UVSIZE > 4
|| (!overflowed && value > 0xffffffff )
#endif
) {
warn("Octal number > 037777777777 non-portable");
}
*len_p = s - start;
if (!overflowed) {
*flags = 0;
return value;
}
*flags = PERL_SCAN_GREATER_THAN_UV_MAX;
if (result)
*result = value_nv;
return UV_MAX;
}
#endif
#endif
#if !defined(my_snprintf)
#if defined(NEED_my_snprintf)
static int DPPP_(my_my_snprintf)(char * buffer, const Size_t len, const char * format, ...);
lib/Algorithm/TrunkClassifier/Classification.pm view on Meta::CPAN
use Algorithm::TrunkClassifier::FeatureSelection;
use Algorithm::TrunkClassifier::DecisionTrunk;
use Algorithm::TrunkClassifier::Util;
use POSIX;
our $VERSION = "v1.0.1";
#Description: Function responsible for building decision trunks and classifying test samples using LOOCV
#Parameters: (1) Package, (2) input dataset, (3) test dataset, (4) classification procedure, (5) split percent,
# (6) testset data file name, (7) classification variable name, (8) output folder name,
# (9) number of levels, (10) verbose flag, (11) input data file name (12) useall flag
#Return value: None
sub trainAndClassify($ $ $ $ $ $ $ $ $ $ $ $ $){
shift(@_);
my ($dataWrapper, $testset, $CLASSIFY, $SPLITPERCENT, $TESTFILE, $CLASSNAME, $OUTPUT, $LEVELS, $VERBOSE, $DATAFILE, $USEALL) = @_;
#Create output files
if(!-e $OUTPUT && $OUTPUT ne "."){
system("mkdir $OUTPUT");
}
open(PERFORMANCE, ">$OUTPUT/performance.txt") or die "Error: Unable to create output file\n";
lib/Algorithm/TrunkClassifier/Classification.pm view on Meta::CPAN
close(CTS_TRUNKS);
close(REPORT);
close(LOG);
if($VERBOSE){
print("Trunk classifier: Job finished\n");
}
}
#Description: Wrapper for the trunk build loop
#Parameters: (1) Training dataset, (2) level limit, (3) sample index, (4) feature occurrence hash ref,
# (5) selected features hash ref, (6) level break flag ref, (7) verbose flag
#Return value: Decision trunk object
sub buildTrunk($ $ $ $ $ $ $){
my ($buildSet, $levelLimit, $sampleIndex, $featOccurRef, $selFeatRef, $levelBreakRef, $VERBOSE) = @_;
#Trunk build loop
my $decisionTrunk = Algorithm::TrunkClassifier::DecisionTrunk->new();
my $noSampleBreak = 0;
for(my $levelIndex = 1; $levelIndex <= $levelLimit; $levelIndex++){
#Perform feature selection
lib/Algorithm/TrunkClassifier/DataWrapper.pm view on Meta::CPAN
use POSIX;
our $VERSION = "v1.0.1";
my $NULL_CLASS = "#NA";
my $PROSPECT_SAMPLES = "samples";
my $PROSPECT_PROBES = "probes";
my $PROSPECT_CLASSES = "classes";
#Description: TrunkClassifier::DataWrapper constructor
#Parameters: (1) TrunkClassifier::DataWrapper, (2) classification variable name, (3) prospect flag,
# (4) supplementary file name, (5) input data file name, (6) verbose flag, (7) dataset type
#Return value: TrunkClassifier::DataWrapper object
sub new{
my ($class, $className, $prospect, $suppFileName, $dataFileName, $VERBOSE, $datasetType) = @_;
my $self = {
"colnames" => "",
"rownames" => "",
"data_matrix" => "",
"class_vector" => "",
"class_one" => "",
"class_two" => ""
lib/Algorithm/TrunkClassifier/DataWrapper.pm view on Meta::CPAN
}
$meta .= "\n";
}
print(DATA_FILE $meta . join("", @dataFile));
close(DATA_FILE);
return $dataFileName;
}
#Description: Reads input data file with expression values and meta data
#Parameters: (1) TrunkClassifier::DataWrapper object, (2) classification variable name
# (3) prospect flag, (4) input data file name, (5) dataset type
#Return value: None
sub readExpData($ $ $ $ $){
my ($self, $className, $prospect, $dataFileName, $datasetType) = @_;
$className = uc($className);
#Read input data file
if(!open(DATA_FILE, $dataFileName)){
die "Error: Unable to open $datasetType '$dataFileName'\n";
}
my @dataFile = <DATA_FILE>;
lib/Algorithm/TrunkClassifier/DataWrapper.pm view on Meta::CPAN
$cols[$index] =~ s/[^0-9]+//g;
}
if($cols[$index] !~ /\./){
$cols[$index] .= ".0";
}
push(@includedCols, $cols[$index] + 0);
}
push(@dataMatrix, \@includedCols);
}
#Check prospect flag
if($prospect){
if($prospect eq $PROSPECT_SAMPLES){
die "Number of samples with $className class\n$classOne: $classOneCount\n$classTwo: $classTwoCount\n";
}
elsif($prospect eq $PROSPECT_PROBES){
my $numProbes = scalar(@dataMatrix);
die "Number of probes in dataset: $numProbes\n";
}
elsif($prospect eq $PROSPECT_CLASSES){
my @classKeys = keys(%classes);
lib/Algorithm/TrunkClassifier/DecisionTrunk.pm view on Meta::CPAN
my ($self, $levelName, $lowerT, $higherT, $lowerC, $higherC) = @_;
push(@{$self->{"level_name"}}, $levelName);
push(@{$self->{"lower_threshold"}}, $lowerT);
push(@{$self->{"higher_threshold"}}, $higherT);
push(@{$self->{"lower_class"}}, $lowerC);
push(@{$self->{"higher_class"}}, $higherC);
}
#Description: Classifies the test set based on the thresholds in the trunk
#Parameters: (1) TrunkClassifier::DecisionTrunk object, (2) TrunkClassifier::DataWrapper object, (3) class one name, (4) class two name
# (5) class report array reference, (6) verbose flag
#Return value: Ratio of correct to total classification performance
sub classify($ $ $ $ $ $){
my ($self, $testSet, $ClassOne, $classTwo, $classReport, $VERBOSE) = @_;
my $class;
my @classification;
my $ratioCorrect = 0;
for(my $sampleIndex = 0; $sampleIndex < $testSet->getNumSamples(); $sampleIndex++){
$class = "";
for(my $levelIndex = 0; $levelIndex < scalar(@{$self->{"level_name"}}); $levelIndex++){
my $probeIndex = $testSet->getProbeIndex($self->{"level_name"}[$levelIndex]);
( run in 2.288 seconds using v1.01-cache-2.11-cpan-94b05bcf43c )