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contrib/GeneFinder/genefinder/gfcode.c  view on Meta::CPAN

static void lettsToNums (Sequence *sequence, GfTable *table) ;
static void countsToFreqs (GfTable *table, int selfSample) ;
static void cleanNucCounts (GfTable *table) ;
static void makeNucFreqs (GfTable *table, int selfSample) ;
static float tPower (float x) ;
static float lRatio (float nCounts, float nTotal, int selfSample) ;
static void makeClassNucFreqs (GfTable *table, int selfSample) ;
static void logDiffs (GfTable *table1, GfTable *table2) ;
static GfTable *readTableFile (char *tableFile, int initial, int selfSample) ;
static GfTable *initTable (void) ;
static void expandTable (GfTable *table) ;
static int **allocIntMat (GfTable *table) ;
static float **allocFloatMat (GfTable *table) ;
static int *makeConvTable (void) ;
static void aceFeatures (Sequence *seq, GfTableVec *tVec, float *fp) ;
static int aceSites (Sequence *sequence, GfTable *table, float cutoff, int type) ;
static void aceMaxSegs (double *cumVec, int start, int end) ;
 
/*****************************************************/

static void lettsToNums (Sequence *sequence, GfTable *table)