Bio-SamTools
view release on metacpan - search on metacpan
view release on metacpan or search on metacpan
Version 1.12
* Fixed the padded_alignments() method to correct "method not found"
bug introduced in version 1.11.
Version 1.11
* Fixed the padded alignments returned for hard-clipped alignments.
Version 1.10
* Added a new Bio::DB::Bam method for caching remote files' indices in the
temp directory. This is used by default by high-level API.
* Fixed bug in soft and hard clipping code; query endpoints should be
correct now.
* Fixed bug in get_all_tags() which was choking on "Z" style tags and giving
scrambled results.
* $feature->query now reports the DNA query in canonical (ref)
coordinates; only $feature->target reverse complements the query
DNA to give the data actually read; cigar string is always in
canonical coordinates
Version 1.09
* Disabled checks for file readability when path is a remote BAM
view all matches for this distributionview release on metacpan - search on metacpan
( run in 0.605 second using v1.00-cache-2.02-grep-82fe00e-cpan-4673cadbf75 )