BioPerl
view release on metacpan or search on metacpan
Bio/DB/SeqFeature/Store/LoadHelper.pm view on Meta::CPAN
}
return wantarray ? @children: \@children;
}
# this acts like each() and returns each parent id and an array ref of children
sub each_family {
my $self = shift;
my $db = tied(%{$self->{Parent2Child}});
if ($self->{_cursordone}) {
undef $self->{_cursordone};
undef $self->{_parent};
undef $self->{_child};
return;
}
# do a slightly tricky cursor search
unless (defined $self->{_parent}) {
return unless $db->seq($self->{_parent},$self->{_child},R_FIRST) == 0;
}
my $parent = $self->{_parent};
my @children = $self->{_child};
my $status;
while (($status = $db->seq($self->{_parent},$self->{_child},R_NEXT)) == 0
&& $self->{_parent} eq $parent
) {
push @children,$self->{_child};
}
$self->{_cursordone}++ if $status != 0;
return ($parent,\@children);
}
sub local_ids {
my $self = shift;
my @ids = keys %{$self->{Local2Global}}
if $self->{Local2Global};
return \@ids;
}
Bio/SeqFeature/Tools/TypeMapper.pm view on Meta::CPAN
"misc_feature" => ["region", undef],
"misc_recomb" => ["recombination_feature", "so:0000298"],
"misc_signal" => ["regulatory_region", "so:0005836"],
"misc_structure" => ["sequence_secondary_structure", "so:0000002"],
"modified_base" => ["modified_base_site", "so:0000305"],
"old_sequence" => ["undefined", ""],
"operon" => ["operon", "so:0000178"],
"oriT" => ["origin_of_transfer", "so:0000724"],
"polya_signal" => ["polyA_signal_sequence", "so:0000551"],
"polya_site" => ["polyA_site", "so:0000553"],
"precursor_RNA" => ["primary_transcript", "so:0000185"],
"prim_transcript" => ["primary_transcript", "so:0000185"],
"primer_bind" => ["primer_binding_site", "so:0005850"],
"promoter" => ["promoter", "so:0000167"],
"protein_bind" => ["protein_binding_site", "so:0000410"],
"rRNA" => ["rRNA", "so:0000252"],
"repeat_region" => ["repeat_region", "so:0000657"],
"repeat_unit" => ["repeat_unit", "so:0000726"],
"satellite" => ["satellite_dna", "so:0000005"],
"scRNA" => ["scRNA", "so:0000013"],
"sig_peptide" => ["signal_peptide", "so:0000418"],
Bio/SeqFeature/Tools/TypeMapper.pm view on Meta::CPAN
#"misc_feature" => "region",
#"misc_recomb" => "recombination_feature",
#"misc_signal" => "regulatory_region",
#"misc_structure" => "sequence_secondary_structure",
#"modified_base" => "modified_base_site",
#"old_sequence" => "undefined",
#"operon" => "operon",
#"oriT" => "origin_of_transfer",
#"polyA_signal" => "polyA_signal_sequence",
#"polyA_site" => "polyA_site",
#"precursor_RNA" => "primary_transcript",
#"prim_transcript" => "primary_transcript",
#"primer_bind" => "primer_binding_site",
#"promoter" => "promoter",
#"protein_bind" => "protein_binding_site",
#"rRNA" => "rRNA",
#"repeat_region" => "repeat_region",
#"repeat_unit" => "repeat_unit",
#"satellite" => "satellite_DNA",
#"scRNA" => "scRNA",
#"sig_peptide" => "signal_peptide",
Bio/SimpleAlign.pm view on Meta::CPAN
sub cigar_line {
my $self = shift;
my $thr=shift||100;
my %cigars;
my @consensus = split "",($self->consensus_string($thr));
my $len = $self->length;
my $gapchar = $self->gap_char;
# create a precursor, something like (1,4,5,6,7,33,45),
# where each number corresponds to a conserved position
foreach my $seq ( $self->each_seq ) {
my @seq = split "", uc ($seq->seq);
my $pos = 1;
for (my $x = 0 ; $x < $len ; $x++ ) {
if ($seq[$x] eq $consensus[$x]) {
push @{$cigars{$seq->get_nse}},$pos;
$pos++;
} elsif ($seq[$x] ne $gapchar) {
$pos++;
t/data/AF032047.gbk view on Meta::CPAN
LOCUS ALSEB2MP1 291 bp DNA linear PRI 30-JUN-1998
DEFINITION Alouatta seniculus beta-2-microglobulin precursor, gene, exon 1.
ACCESSION AF032047
VERSION AF032047.1 GI:3264957
KEYWORDS .
SEGMENT 1 of 2
SOURCE Alouatta seniculus (howler monkey)
ORGANISM Alouatta seniculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Primates; Platyrrhini; Cebidae; Alouattinae;
Alouatta.
REFERENCE 1 (bases 1 to 291)
t/data/AF032047.gbk view on Meta::CPAN
TITLE Direct Submission
JOURNAL Submitted (31-OCT-1997) Structural Biology, Stanford University,
Fairchild Building, Campus West Dr., Room #D-100, Stanford, CA
94305-5126, USA
FEATURES Location/Qualifiers
source 1..291
/organism="Alouatta seniculus"
/mol_type="genomic DNA"
/db_xref="taxon:9503"
mRNA join(<136..202,AF032048.1:67..345,AF032048.1:1162..1189)
/product="beta-2-microglobulin precursor"
sig_peptide 136..195
CDS join(136..202,AF032048.1:67..345,AF032048.1:1162..1175)
/codon_start=1
/product="beta-2-microglobulin precursor"
/protein_id="AAC52091.1"
/db_xref="GI:3264961"
/translation="MARFVVVALLALLSLSGLEAIQHAPKIQVYSRHPAENGKPNFLN
CYVSGFHPSDIEVDLLKNGKKIEKVEHSDLSFSKDWSFYLLYYTEFTPNEKDEYACRV
SHVTFPTPKTVKWDRTM"
sig_peptide 136..195
exon <136..202
/number=1
intron 203..>291
/number=1
t/data/ATF14F8.gbk view on Meta::CPAN
/gene="F14F8_130"
/number=4
exon 58702..58968
/gene="F14F8_140"
/number=1
gene 58702..59507
/gene="F14F8_140"
CDS join(58702..58968,59223..59507)
/gene="F14F8_140"
/note="strong similarity to plastid-specific ribosomal
protein 3 precursor - Spinacia oleracea, EMBL:AF239218"
/codon_start=1
/product="ribosomal protein 3 precursor-like protein"
/protein_id="CAC01775.1"
/db_xref="GI:9755621"
/translation="MAVQANQSASFGFRTASPSQKLSSKPIAHISLSTKLKPSSRPSL
SCSTWNQGQIPARHSCINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKP
KVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELH
RVFLLNQATDIINLWQSSGGDLS"
intron 58969..59222
/gene="F14F8_140"
/number=1
exon 59223..59507
t/data/BOSS_DROME.FASTP_v35_04 view on Meta::CPAN
# fasta35 -E 1 -H BOSS_DROME.fa wormpep190
FASTA searches a protein or DNA sequence data bank
version 35.04 Aug. 28, 2008
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: BOSS_DROME.fa
1>>>BOSS_DROME Protein bride of sevenless precursor. - 896 aa
Library: wormpep190 10449259 residues in 23771 sequences
10449259 residues in 23771 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6522+/-0.000443; mu= 12.7762+/- 0.026
mean_var=109.3856+/-23.016, 0's: 1 Z-trim: 2 B-trim: 0 in 0/59
Lambda= 0.122629
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: BL50 matrix (15:-5) ktup: 2
join: 38, opt: 26, open/ext: -10/-2, width: 16
Scan time: 2.980
t/data/D10483.gbk view on Meta::CPAN
AUTHORS Roa,B.B., Connolly,D.M. and Winkler,M.E.
TITLE Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH
operon of Escherichia coli K-12
JOURNAL J. Bacteriol. 171 (9), 4767-4777 (1989)
MEDLINE 89359108
PUBMED 2670894
REFERENCE 36
AUTHORS Matsubara,Y., Indo,Y., Naito,E., Ozasa,H., Glassberg,R.,
Vockley,J., Ikeda,Y., Kraus,J. and Tanaka,K.
TITLE Molecular cloning and nucleotide sequence of cDNAs encoding the
precursors of rat long chain acyl-coenzyme A, short chain
acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases. Sequence
homology of four enzymes of the acyl-CoA dehydrogenase family
JOURNAL J. Biol. Chem. 264 (27), 16321-16331 (1989)
MEDLINE 89380240
PUBMED 2777793
REFERENCE 37
AUTHORS Minami-Ishii,N., Taketani,S., Osumi,T. and Hashimoto,T.
TITLE Molecular cloning and sequence analysis of the cDNA for rat
mitochondrial enoyl-CoA hydratase. Structural and evolutionary
relationships linked to the bifunctional enzyme of the peroxisomal
t/data/D10483.gbk view on Meta::CPAN
AAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELL
DTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN"
gene complement(53840..54361)
/gene="surA"
CDS complement(53840..54361)
/gene="surA"
/note="ORF_ID:o106#4
similar to PIR Accession Number S40574"
/codon_start=1
/transl_table=11
/product="Survival protein SurA precursor (peptidyl-prolyl
cis-trans isomerase SurA) (EC 5.2.1.8) (PPiase) (rotamase
C)."
/protein_id="BAB96621.1"
/db_xref="GI:21321934"
/translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN
IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQKSNPW
RSRWVTKTTPALS"
gene complement(54414..56768)
/gene="imp"
/note="synonym: ostA"
CDS complement(54414..56768)
/gene="imp"
/note="ORF_ID:o106#5
similar to SwissProt Accession Number P31554"
/codon_start=1
/transl_table=11
/product="Organic solvent tolerance protein precursor."
/protein_id="BAB96622.1"
/db_xref="GI:21321935"
/translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ
GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVR
TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKV
SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP
QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE
t/data/D10483.gbk view on Meta::CPAN
EKLQMQTC"
gene 91074..92840
/gene="ftsI"
/note="synonym: pbpB"
CDS 91074..92840
/gene="ftsI"
/note="ORF_ID:o110#2
similar to PIR Accession Number A93123"
/codon_start=1
/transl_table=11
/product="Penicillin-binding protein 3 precursor."
/protein_id="BAB96652.1"
/db_xref="GI:21321965"
/translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW
LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY
RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
t/data/ECAPAH02.embl view on Meta::CPAN
RX MEDLINE; 89359108.
RA Roa B.B., Connolly D.M., Winkler M.E.;
RT "Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH operon of
RT Escherichia coli K-12";
RL J. Bacteriol. 171:4767-4777(1989).
XX
RN [38]
RX MEDLINE; 89380240.
RA Matsubara Y., Indo Y., Naito E., Ozasa H., Glassberg R., Vockley J.,
RA Ikeda Y., Kraus J., Tanaka K.;
RT "Molecular cloning and nucleotide sequence of cDNAs encoding the precursors
RT of rat long chain acyl-coenzyme A, short chain acyl-coenzyme A, and
RT isovaleryl-coenzyme A dehydrogenases. Sequence homology of four enzymes of
RT the acyl-CoA dehydrogenase famil";
RL J. Biol. Chem. 264:16321-16331(1989).
XX
RN [39]
RA Stragier P.;
RT ;
RL Unpublished.
XX
t/data/ECAPAH02.embl view on Meta::CPAN
FT /translation="MGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARN
FT GADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHI
FT LKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAK
FT EFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN
FT VDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN"
FT CDS complement(53840..54361)
FT /note="ORF_ID:o106#4"
FT /note="similar to PIR Accession Number S40574"
FT /transl_table=11
FT /gene="surA"
FT /product="Survival protein SurA precursor (peptidyl-prolyl
FT cis-trans isomerase SurA) (EC 5.2.1.8) (PPiase) (rotamase
FT C)."
FT /protein_id="BAB96621.1"
FT /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGL
FT MQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIA
FT KQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQKSNPWRSR
FT WVTKTTPALS"
FT CDS complement(54414..56768)
FT /note="ORF_ID:o106#5"
FT /note="similar to SwissProt Accession Number P31554"
FT /transl_table=11
FT /gene="imp"
FT /gene="ostA"
FT /product="Organic solvent tolerance protein precursor."
FT /protein_id="BAB96622.1"
FT /translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQG
FT DTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTV
FT DALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYT
FT ILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGD
FT KRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQ
FT AGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYF
FT NDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYY
FT QNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHY
FT QQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYV
t/data/ECAPAH02.embl view on Meta::CPAN
FT /protein_id="BAB96651.1"
FT /translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFIC
FT IILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIATEK
FT LQMQTC"
FT CDS 91074..92840
FT /note="ORF_ID:o110#2"
FT /note="similar to PIR Accession Number A93123"
FT /transl_table=11
FT /gene="ftsI"
FT /gene="pbpB"
FT /product="Penicillin-binding protein 3 precursor."
FT /protein_id="BAB96652.1"
FT /translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAWL
FT QVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGI
FT SVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLRE
FT ESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDIS
FT STDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSY
FT NPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHE
FT IKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSG
FT LYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERV
FT FPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAG
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
4198080..4198183,4201418..4201488,4213854..4213989,
4215407..4215466,4218117..4218218,4245511..4245626,
4247731..4247917,4249657..4249794,4259741..4259902,
4260871..4260996,4272887..4273051,4277279..4277416,
4281425..4281545,4285308..4285437,4304756..4305016)
/gene="SDK1"
/gene_synonym="FLJ31425"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="protein sidekick-1 precursor"
/protein_id="NP_689957.3"
/db_xref="GI:119220552"
/db_xref="CCDS:CCDS34590.1"
/db_xref="GeneID:221935"
/db_xref="HGNC:19307"
/db_xref="HPRD:07388"
/db_xref="MIM:607216"
gene 3377717..3378258
/gene="RPL21P72"
/gene_synonym="RPL21_28_779"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
7514232..7514300,7516743..7516811,7529020..7529088,
7530209..7530277,7545645..7545698,7546748..7546792,
7550722..7550766,7555445..7555471,7557427..7557468,
7559693..7559746,7561536..7561592,7563860..7563880,
7570979..7571535,7572383..7572506))
/gene="COL28A1"
/gene_synonym="COL28"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="collagen alpha-1(XXVIII) chain precursor"
/protein_id="NP_001032852.2"
/db_xref="GI:154759255"
/db_xref="CCDS:CCDS43553.1"
/db_xref="GeneID:340267"
/db_xref="HGNC:22442"
/db_xref="MIM:609996"
gene 7606616..7647112
/gene="MIOS"
/gene_synonym="FLJ20323"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:30010"
/db_xref="HGNC:20693"
/db_xref="HPRD:06867"
/db_xref="MIM:604639"
CDS join(8475344..8475397,8790638..8791399)
/gene="NXPH1"
/gene_synonym="Nbla00697; NPH1"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="neurexophilin-1 precursor"
/protein_id="NP_689958.1"
/db_xref="GI:23097338"
/db_xref="CCDS:CCDS47540.1"
/db_xref="GeneID:30010"
/db_xref="HGNC:20693"
/db_xref="HPRD:06867"
/db_xref="MIM:604639"
gene 8978401..8979084
/gene="RPL9P19"
/gene_synonym="RPL9_4_783"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
11500289..11500392,11501638..11501770,11509506..11509621,
11513961..11514195,11521415..11521609,11581046..11581258,
11582589..11582744,11630087..11630268,11632881..11633129,
11675757..11676588,11871383..11871572))
/gene="THSD7A"
/gene_synonym="KIAA0960"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="thrombospondin type-1 domain-containing protein
7A precursor"
/protein_id="NP_056019.1"
/db_xref="GI:150170672"
/db_xref="CCDS:CCDS47543.1"
/db_xref="GeneID:221981"
/db_xref="HGNC:22207"
/db_xref="MIM:612249"
gene complement(11859946..11860926)
/gene="LOC100421595"
/note="Derived by automated computational analysis using
gene prediction method: Curated Genomic."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
12409171..12410135,12410282..12410490,12412603..12412873,
12414315..12414388,12414636..12414853,12417402..12417546,
12419103..12419192,12420112..12420359,12423162..12423227,
12428753..12428984,12433220..12433404,12443285..12443342))
/gene="VWDE"
/gene_synonym="FLJ14712"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="von Willebrand factor D and EGF
domain-containing protein precursor"
/protein_id="NP_001129396.1"
/db_xref="GI:209571555"
/db_xref="CCDS:CCDS47544.1"
/db_xref="GeneID:221806"
/db_xref="HGNC:21897"
gene complement(12479045..12480036)
/gene="LOC100419641"
/note="Derived by automated computational analysis using
gene prediction method: Curated Genomic."
/pseudo
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:21748"
/db_xref="HPRD:15417"
/db_xref="MIM:609675"
CDS complement(join(16502173..16502588,16505089..16505293))
/gene="SOSTDC1"
/gene_synonym="CDA019; DKFZp564D206; ECTODIN; USAG1"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="sclerostin domain-containing protein 1
precursor"
/protein_id="NP_056279.1"
/db_xref="GI:23943785"
/db_xref="CCDS:CCDS5360.1"
/db_xref="GeneID:25928"
/db_xref="HGNC:21748"
/db_xref="HPRD:15417"
/db_xref="MIM:609675"
gene 16566505..16621114
/gene="LOC100506049"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:05896"
/db_xref="MIM:606358"
CDS complement(join(16832532..16832581,16834560..16834643,
16837255..16837318,16839368..16839441,16840775..16840827,
16840944..16841007,16841282..16841420))
/gene="AGR2"
/gene_synonym="AG2; GOB-4; HAG-2; PDIA17; XAG-2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="anterior gradient protein 2 homolog precursor"
/protein_id="NP_006399.1"
/db_xref="GI:5453541"
/db_xref="CCDS:CCDS5364.1"
/db_xref="GeneID:10551"
/db_xref="HGNC:328"
/db_xref="HPRD:05896"
/db_xref="MIM:606358"
gene complement(16889636..16890425)
/gene="LOC100287613"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:16545"
/db_xref="MIM:609482"
CDS complement(join(16899206..16899255,16900124..16900207,
16901008..16901071,16901608..16901684,16902234..16902286,
16913404..16913467,16918134..16918242))
/gene="AGR3"
/gene_synonym="AG3; BCMP11; hAG-3; HAG3; PDIA18"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="anterior gradient protein 3 homolog precursor"
/protein_id="NP_789783.1"
/db_xref="GI:28827801"
/db_xref="CCDS:CCDS5365.1"
/db_xref="GeneID:155465"
/db_xref="HGNC:24167"
/db_xref="HPRD:16545"
/db_xref="MIM:609482"
gene complement(16903489..16906014)
/gene="RAD17P1"
/gene_synonym="HRAD17P1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:600253"
CDS join(17338889..17338953,17349560..17349747,
17362125..17362231,17367383..17367472,17369576..17369699,
17370380..17370510,17373536..17373738,17374511..17374620,
17375269..17375410,17378610..17379852,17382545..17382688)
/gene="AHR"
/gene_synonym="bHLHe76"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="aryl hydrocarbon receptor precursor"
/protein_id="NP_001612.1"
/db_xref="GI:4502003"
/db_xref="CCDS:CCDS5366.1"
/db_xref="GeneID:196"
/db_xref="HGNC:348"
/db_xref="HPRD:02596"
/db_xref="MIM:600253"
gene complement(17830385..17980131)
/gene="SNX13"
/gene_synonym="KIAA0713; RGS-PX1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:604160"
CDS join(20371430..20371556,20403260..20403345,
20406635..20406809,20418674..20418920,20420289..20420454,
20421350..20421508,20431026..20431121,20434519..20434608,
20438483..20438617,20441344..20441749,20444251..20444476,
20445685..20445794,20449238..20449401,20449498..20449620)
/gene="ITGB8"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="integrin beta-8 precursor"
/protein_id="NP_002205.1"
/db_xref="GI:4504779"
/db_xref="CCDS:CCDS5370.1"
/db_xref="GeneID:3696"
/db_xref="HGNC:6163"
/db_xref="HPRD:05001"
/db_xref="MIM:604160"
gene 20621702..20622833
/gene="EEF1A1P27"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:6018"
/db_xref="HPRD:00970"
/db_xref="MIM:147620"
CDS join(22766882..22766900,22767063..22767253,
22768312..22768425,22769133..22769279,22771025..22771192)
/gene="IL6"
/gene_synonym="BSF2; HGF; HSF; IFNB2; IL-6"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="interleukin-6 precursor"
/protein_id="NP_000591.1"
/db_xref="GI:10834984"
/db_xref="CCDS:CCDS5375.1"
/db_xref="GeneID:3569"
/db_xref="HGNC:6018"
/db_xref="HPRD:00970"
/db_xref="MIM:147620"
gene complement(22813189..22813638)
/gene="RPS26P32"
/gene_synonym="RPS26; RPS26_13_792"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:10457"
/db_xref="HGNC:4462"
/db_xref="HPRD:05081"
/db_xref="MIM:604368"
CDS join(23286477..23286546,23292926..23293078,
23293788..23293931,23296511..23296684,23299599..23299757,
23300075..23300392,23306100..23306234,23307505..23307607,
23309586..23309794,23313140..23313233,23313684..23313843)
/gene="GPNMB"
/gene_synonym="HGFIN; NMB"
/note="isoform a precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="transmembrane glycoprotein NMB isoform a
precursor"
/protein_id="NP_001005340.1"
/db_xref="GI:52694752"
/db_xref="CCDS:CCDS34610.1"
/db_xref="GeneID:10457"
/db_xref="HGNC:4462"
/db_xref="HPRD:05081"
/db_xref="MIM:604368"
CDS join(23286477..23286546,23292926..23293078,
23293788..23293931,23296511..23296684,23299599..23299757,
23300075..23300392,23306136..23306234,23307505..23307607,
23309586..23309794,23313140..23313233,23313684..23313843)
/gene="GPNMB"
/gene_synonym="HGFIN; NMB"
/note="isoform b precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="transmembrane glycoprotein NMB isoform b
precursor"
/protein_id="NP_002501.1"
/db_xref="GI:4505405"
/db_xref="CCDS:CCDS5380.1"
/db_xref="GeneID:10457"
/db_xref="HGNC:4462"
/db_xref="HPRD:05081"
/db_xref="MIM:604368"
gene 23338940..23349180
/gene="C7orf30"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:90693"
/db_xref="HGNC:22398"
/db_xref="HPRD:14278"
CDS join(23650935..23651172,23682550..23682734)
/gene="CCDC126"
/gene_synonym="FLJ23031; MGC104248"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="coiled-coil domain-containing protein 126
precursor"
/protein_id="NP_620126.2"
/db_xref="GI:40255029"
/db_xref="CCDS:CCDS5384.1"
/db_xref="GeneID:90693"
/db_xref="HGNC:22398"
/db_xref="HPRD:14278"
gene 23658952..23662442
/gene="LOC100422533"
/note="Derived by automated computational analysis using
gene prediction method: Curated Genomic."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/gene="NPVF"
/gene_synonym="C7orf9; RFRP"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/db_xref="GeneID:64111"
/db_xref="HGNC:13782"
mRNA complement(join(25264189..25264792,25266245..25266645,
25267921..25268105))
/gene="NPVF"
/gene_synonym="C7orf9; RFRP"
/product="neuropeptide VF precursor"
/exception="mismatches in transcription"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/transcript_id="NM_022150.3"
/db_xref="GI:93204874"
/db_xref="GeneID:64111"
/db_xref="HGNC:13782"
CDS complement(join(25264741..25264792,25266245..25266645,
25267921..25268058))
/gene="NPVF"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:608475"
CDS complement(join(27565833..27565991,27570811..27570967,
27577960..27578036,27582586..27582719,27668990..27669111,
27671955..27672064,27689092..27689252,27702317..27702407))
/gene="HIBADH"
/gene_synonym="MGC40361; NS5ATP1"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="3-hydroxyisobutyrate dehydrogenase,
mitochondrial precursor"
/protein_id="NP_689953.1"
/db_xref="GI:23308751"
/db_xref="CCDS:CCDS5414.1"
/db_xref="GeneID:11112"
/db_xref="HGNC:4907"
/db_xref="HPRD:12238"
/db_xref="MIM:608475"
gene 27778992..27869386
/gene="TAX1BP1"
/gene_synonym="CALCOCO3; T6BP; TXBP151"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:22200"
/db_xref="MIM:613356"
CDS complement(28995227..28997662)
/gene="TRIL"
/gene_synonym="KIAA0644"
/exception="unclassified translation discrepancy"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="TLR4 interactor with leucine rich repeats
precursor"
/protein_id="NP_055632.2"
/db_xref="GI:76880480"
/db_xref="GeneID:9865"
/db_xref="HGNC:22200"
/db_xref="MIM:613356"
gene 29019583..29052985
/gene="LOC100506497"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/db_xref="GeneID:100506497"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
CDS complement(join(29035388..29035498,29070193..29070375,
29103677..29103850,29105639..29105737,29111389..29111520,
29111917..29112039,29126100..29126166,29132239..29132318,
29134700..29134758,29135719..29135833,29152320..29152438,
29160509..29160677))
/gene="CPVL"
/gene_synonym="HVLP; MGC10029"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="probable serine carboxypeptidase CPVL precursor"
/protein_id="NP_112601.3"
/db_xref="GI:83641874"
/db_xref="CCDS:CCDS5419.1"
/db_xref="GeneID:54504"
/db_xref="HGNC:14399"
/db_xref="MIM:609780"
CDS complement(join(29035388..29035498,29070193..29070375,
29103677..29103850,29105639..29105737,29111389..29111520,
29111917..29112039,29126100..29126166,29132239..29132318,
29134700..29134758,29135719..29135833,29152320..29152438,
29160509..29160677))
/gene="CPVL"
/gene_synonym="HVLP; MGC10029"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="probable serine carboxypeptidase CPVL precursor"
/protein_id="NP_061902.2"
/db_xref="GI:83641876"
/db_xref="CCDS:CCDS5419.1"
/db_xref="GeneID:54504"
/db_xref="HGNC:14399"
/db_xref="MIM:609780"
gene 29234121..29553944
/gene="CHN2"
/gene_synonym="ARHGAP3; BCH; MGC138360; RHOGAP3"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:18625"
/db_xref="HPRD:16898"
CDS complement(join(30054351..30054509,30058612..30058739,
30062281..30062432,30065928..30066124))
/gene="FKBP14"
/gene_synonym="FKBP22; FLJ20731"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="peptidyl-prolyl cis-trans isomerase FKBP14
precursor"
/protein_id="NP_060416.1"
/db_xref="GI:8923659"
/db_xref="CCDS:CCDS5423.1"
/db_xref="GeneID:55033"
/db_xref="HGNC:18625"
/db_xref="HPRD:16898"
gene 30067977..30157961
/gene="PLEKHA8"
/gene_synonym="DKFZp313M1034; DKFZp686J09164; FAPP2;
MGC3358"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:2358"
/db_xref="MIM:602034"
/db_xref="HPRD:03614"
CDS complement(join(30693076..30693216,30694655..30694696,
30695196..30695331,30695543..30695628,30700189..30700261,
30701772..30701832,30702310..30702463,30704686..30704803,
30705146..30705255,30706844..30706929,30721531..30721656,
30728807..30728900,30739560..30739649))
/gene="CRHR2"
/gene_synonym="CRF2; CRFR2"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="corticotropin-releasing factor receptor 2
isoform 2 precursor"
/protein_id="NP_001189404.1"
/db_xref="GI:321117173"
/db_xref="GeneID:1395"
/db_xref="HGNC:2358"
/db_xref="MIM:602034"
/db_xref="HPRD:03614"
CDS complement(join(30693076..30693216,30694655..30694696,
30695196..30695331,30695543..30695628,30700189..30700261,
30701772..30701832,30702310..30702463,30704686..30704803,
30705146..30705255,30706844..30706929,30721531..30721656,
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:2358"
/db_xref="MIM:602034"
/db_xref="HPRD:03614"
CDS complement(join(30693076..30693216,30694655..30694696,
30695196..30695331,30695543..30695628,30700189..30700261,
30701772..30701832,30702310..30702463,30704686..30704803,
30705146..30705255,30706844..30706929,30721531..30721656,
30721794..30721896))
/gene="CRHR2"
/gene_synonym="CRF2; CRFR2"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="corticotropin-releasing factor receptor 2
isoform 1 precursor"
/protein_id="NP_001874.2"
/db_xref="GI:32307159"
/db_xref="CCDS:CCDS5429.1"
/db_xref="GeneID:1395"
/db_xref="HGNC:2358"
/db_xref="HPRD:03614"
/db_xref="MIM:602034"
CDS complement(join(30693076..30693216,30694655..30694696,
30695196..30695331,30695543..30695628,30700189..30700261,
30701772..30701832,30702310..30702463,30704686..30704803,
30705146..30705252,30706844..30706929,30721531..30721656,
30721794..30721896))
/gene="CRHR2"
/gene_synonym="CRF2; CRFR2"
/note="isoform 4 precursor is encoded by transcript
variant 4; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="corticotropin-releasing factor receptor 2
isoform 4 precursor"
/protein_id="NP_001189411.1"
/db_xref="GI:321117247"
/db_xref="GeneID:1395"
/db_xref="HGNC:2358"
/db_xref="MIM:602034"
/db_xref="HPRD:03614"
CDS complement(join(30694356..30694424,30694655..30694696,
30695196..30695331,30695543..30695628,30700189..30700261,
30701772..30701832,30702310..30702463,30704686..30704803,
30705146..30705255,30706844..30706929,30721531..30721656,
30721794..30721896))
/gene="CRHR2"
/gene_synonym="CRF2; CRFR2"
/note="isoform 5 precursor is encoded by transcript
variant 5; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="corticotropin-releasing factor receptor 2
isoform 5 precursor"
/protein_id="NP_001189412.1"
/db_xref="GI:321117257"
/db_xref="GeneID:1395"
/db_xref="HGNC:2358"
/db_xref="MIM:602034"
/db_xref="HPRD:03614"
gene 30791751..30932002
/gene="INMT-FAM188B"
/gene_synonym="FLJ98803"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
31008678..31008785,31009482..31009579,31010734..31010831,
31011578..31011710,31013600..31013753,31014044..31014104,
31014586..31014655,31015392..31015483,31016044..31016173,
31016896..31016937,31018734..31018859)
/gene="GHRHR"
/gene_synonym="GHRFR; GRFR; IGHD1B"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="growth hormone-releasing hormone receptor
precursor"
/protein_id="NP_000814.2"
/db_xref="GI:58530851"
/db_xref="CCDS:CCDS5432.1"
/db_xref="GeneID:2692"
/db_xref="HGNC:4266"
/db_xref="HPRD:00748"
/db_xref="MIM:139191"
gene 31092076..31151093
/gene="ADCYAP1R1"
/gene_synonym="PAC1; PACAPR; PACAPRI"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:242"
/db_xref="MIM:102981"
CDS join(31102881..31102931,31104447..31104552,
31117606..31117713,31120228..31120248,31121328..31121369,
31123756..31123865,31124352..31124449,31124925..31125057,
31125998..31126151,31126557..31126617,31127241..31127310,
31132258..31132349,31139741..31139824,31142851..31142980,
31144482..31144523,31146110..31146298)
/gene="ADCYAP1R1"
/gene_synonym="PAC1; PACAPR; PACAPRI"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="pituitary adenylate cyclase-activating
polypeptide type I receptor isoform 1 precursor"
/protein_id="NP_001186564.1"
/db_xref="GI:313851018"
/db_xref="GeneID:117"
/db_xref="HGNC:242"
/db_xref="MIM:102981"
CDS join(31102881..31102931,31104447..31104552,
31117606..31117713,31120228..31120248,31121328..31121369,
31123756..31123865,31124352..31124449,31124925..31125057,
31125998..31126151,31126557..31126617,31127241..31127310,
31132258..31132349,31139744..31139824,31142851..31142980,
31144482..31144523,31146110..31146298)
/gene="ADCYAP1R1"
/gene_synonym="PAC1; PACAPR; PACAPRI"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="pituitary adenylate cyclase-activating
polypeptide type I receptor isoform 2 precursor"
/protein_id="NP_001186565.1"
/db_xref="GI:313851020"
/db_xref="GeneID:117"
/db_xref="HGNC:242"
/db_xref="MIM:102981"
CDS join(31102881..31102931,31104447..31104552,
31117606..31117713,31120228..31120248,31121328..31121369,
31123756..31123865,31124352..31124449,31124925..31125057,
31125998..31126151,31126557..31126617,31127241..31127310,
31132258..31132349,31142851..31142980,31144482..31144523,
31146110..31146298)
/gene="ADCYAP1R1"
/gene_synonym="PAC1; PACAPR; PACAPRI"
/note="isoform 3 precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="pituitary adenylate cyclase-activating
polypeptide type I receptor isoform 3 precursor"
/protein_id="NP_001109.2"
/db_xref="GI:29171759"
/db_xref="CCDS:CCDS5433.1"
/db_xref="GeneID:117"
/db_xref="HGNC:242"
/db_xref="MIM:102981"
CDS join(31102881..31102931,31104447..31104552,
31117606..31117713,31123756..31123865,31124352..31124449,
31124925..31125057,31125998..31126151,31126557..31126617,
31127241..31127310,31132258..31132349,31142851..31142980,
31144482..31144523,31146110..31146298)
/gene="ADCYAP1R1"
/gene_synonym="PAC1; PACAPR; PACAPRI"
/note="isoform 4 precursor is encoded by transcript
variant 4; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="pituitary adenylate cyclase-activating
polypeptide type I receptor isoform 4 precursor"
/protein_id="NP_001186566.1"
/db_xref="GI:313851023"
/db_xref="GeneID:117"
/db_xref="HGNC:242"
/db_xref="MIM:102981"
gene complement(31377079..31380538)
/gene="NEUROD6"
/gene_synonym="Atoh2; bHLHa2; Math-2; MATH2; NEX1M"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
33014794..33014983,33015966..33016111,33019976..33020165,
33028119..33028264,33035775..33035961,33039727..33039872,
33042288..33042451,33044787..33044963)
/gene="FKBP9"
/gene_synonym="DKFZp586B1723; FKBP60; FKBP63; MGC126772;
MGC138258; PPIase"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="peptidyl-prolyl cis-trans isomerase FKBP9
precursor"
/protein_id="NP_009201.2"
/db_xref="GI:33469985"
/db_xref="CCDS:CCDS5439.1"
/db_xref="GeneID:11328"
/db_xref="HGNC:3725"
/db_xref="HPRD:06510"
gene complement(33053742..33102409)
/gene="NT5C3"
/gene_synonym="cN-III; MGC27337; MGC87109; MGC87828;
P5'N-1; PN-I; PSN1; UMPH; UMPH1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
34014314..34014396,34085918..34086017,34091473..34091582,
34094775..34094915,34097671..34097775,34101614..34101659,
34118469..34118798,34125368..34125704,34182842..34182972,
34192704..34192885)
/gene="BMPER"
/gene_synonym="CRIM3; CV-2; CV2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="BMP-binding endothelial regulator protein
precursor"
/protein_id="NP_597725.1"
/db_xref="GI:37693519"
/db_xref="CCDS:CCDS5442.1"
/db_xref="GeneID:168667"
/db_xref="HGNC:24154"
/db_xref="HPRD:16368"
/db_xref="MIM:608699"
gene complement(34386124..34873943)
/gene="AAA1"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:07357"
/db_xref="MIM:606570"
CDS complement(join(37947081..37947266,37949219..37949282,
37951721..37951919,37953815..37953880,37953975..37954055,
37955695..37956139))
/gene="SFRP4"
/gene_synonym="FRP-4; FRPHE; MGC26498"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="secreted frizzled-related protein 4 precursor"
/protein_id="NP_003005.2"
/db_xref="GI:170784838"
/db_xref="CCDS:CCDS5453.1"
/db_xref="GeneID:6424"
/db_xref="HGNC:10778"
/db_xref="HPRD:07357"
/db_xref="MIM:606570"
gene 37960163..37991543
/gene="EPDR1"
/gene_synonym="EPDR; MERP-1; MERP1; UCC1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:17572"
/db_xref="HPRD:16865"
CDS join(37960182..37960810,37988442..37988650,
37989802..37989998)
/gene="EPDR1"
/gene_synonym="EPDR; MERP-1; MERP1; UCC1"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="mammalian ependymin-related protein 1 isoform 1
precursor"
/protein_id="NP_060019.1"
/db_xref="GI:24475586"
/db_xref="CCDS:CCDS5454.1"
/db_xref="GeneID:54749"
/db_xref="HGNC:17572"
/db_xref="HPRD:16865"
gene 38217933..38270270
/gene="STARD3NL"
/gene_synonym="MENTHO; MGC3251"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:9839"
/db_xref="HPRD:01549"
/db_xref="MIM:179550"
CDS join(39726267..39726380,39729981..39730189,
39736284..39736458,39745722..39745844)
/gene="RALA"
/gene_synonym="MGC48949; RAL"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="ras-related protein Ral-A precursor"
/protein_id="NP_005393.2"
/db_xref="GI:33946329"
/db_xref="CCDS:CCDS5460.1"
/db_xref="GeneID:5898"
/db_xref="HGNC:9839"
/db_xref="HPRD:01549"
/db_xref="MIM:179550"
gene 39773167..39834222
/gene="NCRNA00265"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:3624"
/db_xref="HGNC:6066"
/db_xref="HPRD:00929"
/db_xref="MIM:147290"
CDS complement(join(41729248..41730140,41739585..41739972))
/gene="INHBA"
/gene_synonym="EDF; FRP"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="inhibin beta A chain precursor"
/protein_id="NP_002183.1"
/db_xref="GI:4504699"
/db_xref="CCDS:CCDS5464.1"
/db_xref="GeneID:3624"
/db_xref="HGNC:6066"
/db_xref="HPRD:00929"
/db_xref="MIM:147290"
gene 41733514..41818976
/gene="LOC285954"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:14752"
/db_xref="MIM:611839"
CDS join(42971986..42972115,42974554..42974735,
42976921..42977175)
/gene="MRPL32"
/gene_synonym="bMRP-59b; HSPC283; L32mt; MRP-L32"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="39S ribosomal protein L32, mitochondrial
precursor"
/protein_id="NP_114109.1"
/db_xref="GI:13994261"
/db_xref="CCDS:CCDS5468.1"
/db_xref="GeneID:64983"
/db_xref="HGNC:14035"
/db_xref="HPRD:14752"
/db_xref="MIM:611839"
gene 43152198..43602938
/gene="HECW1"
/gene_synonym="KIAA0322; NEDL1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:11229"
/db_xref="MIM:109750"
CDS join(43810758..43810769,43827503..43827624,
43830848..43830967,43832314..43832411,43840064..43840171,
43843275..43843446,43846576..43846834)
/gene="BLVRA"
/gene_synonym="BLVR; BVR; BVRA"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="biliverdin reductase A precursor"
/protein_id="NP_000703.2"
/db_xref="GI:33589854"
/db_xref="CCDS:CCDS5472.1"
/db_xref="GeneID:644"
/db_xref="HGNC:1062"
/db_xref="HPRD:11229"
/db_xref="MIM:109750"
gene complement(43906157..43946231)
/gene="URGCP-MRPS24"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:17593"
/db_xref="MIM:611986"
CDS complement(join(43906298..43906581,43908562..43908673,
43908907..43908975,43909056..43909094))
/gene="MRPS24"
/gene_synonym="bMRP-47; bMRP47; HSPC335; MRP-S24; S24mt"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="28S ribosomal protein S24, mitochondrial
precursor"
/protein_id="NP_114403.1"
/db_xref="GI:15721937"
/db_xref="CCDS:CCDS5473.1"
/db_xref="GeneID:64951"
/db_xref="HGNC:14510"
/db_xref="HPRD:17593"
/db_xref="MIM:611986"
CDS complement(join(43908585..43908673,43908907..43908975,
43921258..43921296,43921506..43921556,43927014..43927084,
43946161..43946174))
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
44148887..44148940,44149614..44149723,44149806..44149945,
44150324..44150408,44150512..44150656,44150753..44150838,
44151106..44151229,44151453..44151649,44151741..44151920,
44152157..44152508,44152590..44152729,44152851..44152950,
44153193..44153860)
/gene="AEBP1"
/gene_synonym="ACLP; FLJ33612"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="adipocyte enhancer-binding protein 1 precursor"
/protein_id="NP_001120.3"
/db_xref="GI:53692189"
/db_xref="CCDS:CCDS5476.1"
/db_xref="GeneID:165"
/db_xref="HGNC:303"
/db_xref="HPRD:04281"
/db_xref="MIM:602981"
gene 44150441..44150523
/gene="MIR4649"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:09725"
CDS complement(join(44553046..44553248,44555402..44555564,
44555683..44555796,44556302..44556533,44556806..44556956,
44558185..44558265,44560364..44560419,44560591..44560717,
44561311..44561435,44561651..44561841,44571354..44571443,
44571679..44571816,44573030..44573157,44573338..44573452,
44574046..44574228,44575439..44575567,44575855..44576027,
44576441..44576541,44578416..44579941,44580805..44580858))
/gene="NPC1L1"
/gene_synonym="NPC11L1"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="Niemann-Pick C1-like protein 1 isoform 1
precursor"
/protein_id="NP_037521.2"
/db_xref="GI:156231351"
/db_xref="CCDS:CCDS5491.1"
/db_xref="GeneID:29881"
/db_xref="HGNC:7898"
/db_xref="HPRD:09725"
/db_xref="MIM:608010"
CDS complement(join(44553046..44553248,44555402..44555564,
44555683..44555796,44556302..44556533,44556806..44556956,
44560364..44560419,44560591..44560717,44561311..44561435,
44561651..44561841,44571354..44571443,44571679..44571816,
44573030..44573157,44573338..44573452,44574046..44574228,
44575439..44575567,44575855..44576027,44576441..44576541,
44578416..44579941,44580805..44580858))
/gene="NPC1L1"
/gene_synonym="NPC11L1"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="Niemann-Pick C1-like protein 1 isoform 2
precursor"
/protein_id="NP_001095118.1"
/db_xref="GI:156231353"
/db_xref="CCDS:CCDS43575.1"
/db_xref="GeneID:29881"
/db_xref="HGNC:7898"
/db_xref="HPRD:09725"
/db_xref="MIM:608010"
gene complement(44605403..44614137)
/gene="DDX56"
/gene_synonym="DDX21; DDX26; NOH61"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:13666"
/db_xref="MIM:612038"
CDS complement(join(44619078..44619227,44620692..44620838,
44621048..44621173,44621322..44621422,44621646..44621805))
/gene="TMED4"
/gene_synonym="ERS25; HNLF"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="transmembrane emp24 domain-containing protein 4
precursor"
/protein_id="NP_872353.2"
/db_xref="GI:33457308"
/db_xref="CCDS:CCDS5493.1"
/db_xref="GeneID:222068"
/db_xref="HGNC:22301"
/db_xref="HPRD:13666"
/db_xref="MIM:612038"
gene 44646121..44748669
/gene="OGDH"
/gene_synonym="AKGDH; E1k; OGDC"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
CDS join(44663943..44664164,44684926..44685117,
44687256..44687358,44706335..44706450,44713386..44713540,
44714010..44714156,44714777..44714867,44715569..44715748,
44721319..44721447,44733424..44733603,44734023..44734175,
44735624..44735726,44736028..44736156,44736513..44736663,
44736969..44737096,44737203..44737381,44737791..44737862,
44739740..44739868,44741142..44741214,44746824..44746987,
44747181..44747335,44747478..44747598)
/gene="OGDH"
/gene_synonym="AKGDH; E1k; OGDC"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="2-oxoglutarate dehydrogenase, mitochondrial
isoform 1 precursor"
/protein_id="NP_002532.2"
/db_xref="GI:51873036"
/db_xref="CCDS:CCDS34627.1"
/db_xref="GeneID:4967"
/db_xref="HGNC:8124"
/db_xref="HPRD:08938"
/db_xref="MIM:613022"
CDS join(44663943..44664164,44684926..44685117,
44687043..44687133,44706335..44706450,44713386..44713540,
44714010..44714156,44714777..44714867,44715569..44715748,
44721319..44721447,44733424..44733603,44734023..44734175,
44735624..44735726,44736028..44736156,44736513..44736663,
44736969..44737096,44737203..44737381,44737791..44737862,
44739740..44739868,44741142..44741214,44746824..44746987,
44747181..44747335,44747478..44747598)
/gene="OGDH"
/gene_synonym="AKGDH; E1k; OGDC"
/note="isoform 3 precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="2-oxoglutarate dehydrogenase, mitochondrial
isoform 3 precursor"
/protein_id="NP_001158508.1"
/db_xref="GI:259013553"
/db_xref="CCDS:CCDS55107.1"
/db_xref="GeneID:4967"
/db_xref="HGNC:8124"
/db_xref="HPRD:08938"
/db_xref="MIM:613022"
CDS join(44663943..44664164,44684926..44685117,
44687256..44687358,44706335..44706450,44713386..44713540,
44714010..44714156,44714777..44714867,44715569..44715826)
/gene="OGDH"
/gene_synonym="AKGDH; E1k; OGDC"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="2-oxoglutarate dehydrogenase, mitochondrial
isoform 2 precursor"
/protein_id="NP_001003941.1"
/db_xref="GI:51873038"
/db_xref="CCDS:CCDS47580.1"
/db_xref="GeneID:4967"
/db_xref="HGNC:8124"
/db_xref="HPRD:08938"
/db_xref="MIM:613022"
gene 44788530..44809480
/gene="ZMIZ2"
/gene_synonym="DKFZp761I2123; hZIMP7; KIAA1886; NET27;
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:10268"
/db_xref="HGNC:9845"
/db_xref="HPRD:05517"
/db_xref="MIM:605155"
CDS join(45197428..45197485,45216908..45217040,
45222756..45223011)
/gene="RAMP3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="receptor activity-modifying protein 3 precursor"
/protein_id="NP_005847.1"
/db_xref="GI:5032023"
/db_xref="CCDS:CCDS5503.1"
/db_xref="GeneID:10268"
/db_xref="HGNC:9845"
/db_xref="HPRD:05517"
/db_xref="MIM:605155"
gene 45343219..45343961
/gene="LOC100419775"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:00897"
/db_xref="MIM:146730"
CDS join(45928252..45928600,45930147..45930316,
45931531..45931659,45932559..45932690)
/gene="IGFBP1"
/gene_synonym="AFBP; hIGFBP-1; IBP1; IGF-BP25; PP12"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="insulin-like growth factor-binding protein 1
precursor"
/protein_id="NP_000587.1"
/db_xref="GI:4504615"
/db_xref="CCDS:CCDS5504.1"
/db_xref="GeneID:3484"
/db_xref="HGNC:5469"
/db_xref="HPRD:00897"
/db_xref="MIM:146730"
gene complement(45951844..45960871)
/gene="IGFBP3"
/gene_synonym="BP-53; IBP3"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/transcript_id="NM_000598.4"
/db_xref="GI:62243067"
/db_xref="GeneID:3486"
/db_xref="HGNC:5472"
/db_xref="HPRD:00899"
/db_xref="MIM:146732"
CDS complement(join(45954419..45954544,45956147..45956266,
45956812..45957038,45960319..45960739))
/gene="IGFBP3"
/gene_synonym="BP-53; IBP3"
/note="isoform a precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="insulin-like growth factor-binding protein 3
isoform a precursor"
/protein_id="NP_001013416.1"
/db_xref="GI:62243248"
/db_xref="CCDS:CCDS34632.1"
/db_xref="GeneID:3486"
/db_xref="HGNC:5472"
/db_xref="HPRD:00899"
/db_xref="MIM:146732"
CDS complement(join(45954419..45954544,45956147..45956266,
45956812..45957038,45960337..45960739))
/gene="IGFBP3"
/gene_synonym="BP-53; IBP3"
/note="isoform b precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="insulin-like growth factor-binding protein 3
isoform b precursor"
/protein_id="NP_000589.2"
/db_xref="GI:62243068"
/db_xref="CCDS:CCDS5505.1"
/db_xref="GeneID:3486"
/db_xref="HGNC:5472"
/db_xref="HPRD:00899"
/db_xref="MIM:146732"
gene complement(46037142..46037670)
/gene="FTLP15"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:80099"
/db_xref="HGNC:21911"
/db_xref="HPRD:08635"
CDS join(47834934..47835041,47857624..47857793,
47859105..47859195)
/gene="C7orf69"
/gene_synonym="FLJ21075"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="hypothetical protein LOC80099 precursor"
/protein_id="NP_079307.2"
/db_xref="GI:153251669"
/db_xref="CCDS:CCDS43581.1"
/db_xref="GeneID:80099"
/db_xref="HGNC:21911"
/db_xref="HPRD:08635"
gene complement(48002885..48019222)
/gene="HUS1"
/gene_synonym="hHUS1"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:30200"
/db_xref="HPRD:18271"
/db_xref="MIM:611108"
CDS join(49815032..49815727,49842307..49842436,
49951630..49951781)
/gene="VWC2"
/gene_synonym="MGC131845; PSST739; UNQ739"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="brorin precursor"
/protein_id="NP_940972.2"
/db_xref="GI:260654089"
/db_xref="CCDS:CCDS5508.1"
/db_xref="GeneID:375567"
/db_xref="HGNC:30200"
/db_xref="HPRD:18271"
/db_xref="MIM:611108"
gene complement(49977023..50132860)
/gene="ZPBP"
/gene_synonym="FLJ93221; ZPBP1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
55220239..55220357,55221704..55221845,55223523..55223639,
55224226..55224352,55224452..55224525,55225356..55225446,
55227832..55228031,55229192..55229324,55231426..55231516,
55232973..55233130,55238868..55238906,55240676..55240817,
55241614..55241736,55242415..55242513,55248986..55249171,
55259412..55259567,55260459..55260534,55266410..55266556,
55268009..55268106,55268881..55269048,55269428..55269475,
55270210..55270318,55272949..55273310)
/gene="EGFR"
/gene_synonym="ERBB; ERBB1; HER1; mENA; PIG61"
/note="isoform a precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="epidermal growth factor receptor isoform a
precursor"
/protein_id="NP_005219.2"
/db_xref="GI:29725609"
/db_xref="CCDS:CCDS5514.1"
/db_xref="GeneID:1956"
/db_xref="HGNC:3236"
/db_xref="HPRD:00579"
/db_xref="MIM:131550"
CDS join(55086971..55087058,55209979..55210130,
55210998..55211181,55214299..55214433,55218987..55219055,
55220239..55220357,55221704..55221845,55223523..55223639,
55224226..55224352,55224452..55224525,55225356..55225446,
55227832..55228031,55229192..55229324,55231426..55231516,
55232973..55233130,55238000..55238237)
/gene="EGFR"
/gene_synonym="ERBB; ERBB1; HER1; mENA; PIG61"
/note="isoform d precursor is encoded by transcript
variant 4; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="epidermal growth factor receptor isoform d
precursor"
/protein_id="NP_958441.1"
/db_xref="GI:41327736"
/db_xref="CCDS:CCDS5515.1"
/db_xref="GeneID:1956"
/db_xref="HGNC:3236"
/db_xref="HPRD:00579"
/db_xref="MIM:131550"
CDS join(55086971..55087058,55209979..55210130,
55210998..55211181,55214299..55214433,55218987..55219055,
55220239..55220357,55221704..55221845,55223523..55223639,
55224226..55224352,55224452..55224525,55225356..55225446,
55227832..55228031,55229192..55229324,55231426..55231516,
55232973..55233130,55236216..55236222)
/gene="EGFR"
/gene_synonym="ERBB; ERBB1; HER1; mENA; PIG61"
/note="isoform b precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="epidermal growth factor receptor isoform b
precursor"
/protein_id="NP_958439.1"
/db_xref="GI:41327732"
/db_xref="CCDS:CCDS5516.1"
/db_xref="GeneID:1956"
/db_xref="HGNC:3236"
/db_xref="HPRD:00579"
/db_xref="MIM:131550"
CDS join(55086971..55087058,55209979..55210130,
55210998..55211181,55214299..55214433,55218987..55219055,
55220239..55220357,55221704..55221845,55223523..55223639,
55224226..55224352,55224452..55224536)
/gene="EGFR"
/gene_synonym="ERBB; ERBB1; HER1; mENA; PIG61"
/note="isoform c precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="epidermal growth factor receptor isoform c
precursor"
/protein_id="NP_958440.1"
/db_xref="GI:41327734"
/db_xref="CCDS:CCDS47587.1"
/db_xref="GeneID:1956"
/db_xref="HGNC:3236"
/db_xref="HPRD:00579"
/db_xref="MIM:131550"
gene complement(55247443..55256648)
/gene="LOC100507500"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:14047"
/db_xref="HPRD:14779"
/db_xref="MIM:611980"
CDS join(56020889..56021011,56022602..56022871)
/gene="MRPS17"
/gene_synonym="HSPC011; MRP-S17; RPMS17"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="28S ribosomal protein S17, mitochondrial
precursor"
/protein_id="NP_057053.1"
/db_xref="GI:7705425"
/db_xref="CCDS:CCDS5520.1"
/db_xref="GeneID:51373"
/db_xref="HGNC:14047"
/db_xref="HPRD:14779"
/db_xref="MIM:611980"
gene 56032270..56067875
/gene="GBAS"
/gene_synonym="NIPSNAP2"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:20415"
/db_xref="MIM:607940"
/db_xref="HPRD:06400"
CDS join(56131948..56132071,56136175..56136331,
56140690..56140804,56141867..56141911,56142279..56142429,
56144527..56144582,56145795..56145879,56147221..56147564)
/gene="SUMF2"
/gene_synonym="DKFZp566I1024; DKFZp686I1024;
DKFZp686L17160; DKFZp781L1035; MGC99485; pFGE"
/exception="mismatches in translation"
/note="isoform e precursor is encoded by transcript
variant 5; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="sulfatase-modifying factor 2 isoform e
precursor"
/protein_id="NP_001123541.1"
/db_xref="GI:194248090"
/db_xref="CCDS:CCDS47589.1"
/db_xref="GeneID:25870"
/db_xref="HGNC:20415"
/db_xref="HPRD:06400"
/db_xref="MIM:607940"
CDS join(56131948..56132071,56136175..56136331,
56140690..56140804,56141867..56141911,56142279..56142429,
56144527..56144582,56145795..56145879,56146057..56146201,
56147221..56147305)
/gene="SUMF2"
/gene_synonym="DKFZp566I1024; DKFZp686I1024;
DKFZp686L17160; DKFZp781L1035; MGC99485; pFGE"
/exception="mismatches in translation"
/note="isoform b precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="sulfatase-modifying factor 2 isoform b
precursor"
/protein_id="NP_056226.2"
/db_xref="GI:194248088"
/db_xref="CCDS:CCDS5524.2"
/db_xref="GeneID:25870"
/db_xref="HGNC:20415"
/db_xref="HPRD:06400"
/db_xref="MIM:607940"
CDS join(56131948..56132071,56136175..56136331,
56140690..56140804,56142279..56142429,56144527..56144582,
56145795..56145879,56146057..56146201,56147221..56147305)
/gene="SUMF2"
/gene_synonym="DKFZp566I1024; DKFZp686I1024;
DKFZp686L17160; DKFZp781L1035; MGC99485; pFGE"
/exception="mismatches in translation"
/note="isoform c precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="sulfatase-modifying factor 2 isoform c
precursor"
/protein_id="NP_001035934.2"
/db_xref="GI:194248087"
/db_xref="CCDS:CCDS43588.2"
/db_xref="GeneID:25870"
/db_xref="HGNC:20415"
/db_xref="HPRD:06400"
/db_xref="MIM:607940"
CDS join(56131948..56132071,56136175..56136331,
56140690..56140804,56145795..56145879,56146057..56146201,
56147221..56147305)
/gene="SUMF2"
/gene_synonym="DKFZp566I1024; DKFZp686I1024;
DKFZp686L17160; DKFZp781L1035; MGC99485; pFGE"
/exception="mismatches in translation"
/note="isoform d precursor is encoded by transcript
variant 4; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="sulfatase-modifying factor 2 isoform d
precursor"
/protein_id="NP_001035935.2"
/db_xref="GI:194248084"
/db_xref="CCDS:CCDS43589.2"
/db_xref="GeneID:25870"
/db_xref="HGNC:20415"
/db_xref="HPRD:06400"
/db_xref="MIM:607940"
CDS join(56140730..56140804,56141867..56141911,
56142279..56142429,56144527..56144582,56145795..56145879,
56146057..56146201,56147221..56147305)
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:21645"
/db_xref="HPRD:09879"
CDS complement(join(56169544..56169554,56170560..56170704,
56171919..56172168,56174057..56174106))
/gene="CHCHD2"
/gene_synonym="C7orf17"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="coiled-coil-helix-coiled-coil-helix
domain-containing protein 2, mitochondrial precursor"
/protein_id="NP_057223.1"
/db_xref="GI:7705851"
/db_xref="CCDS:CCDS5526.1"
/db_xref="GeneID:51142"
/db_xref="HGNC:21645"
/db_xref="HPRD:09879"
gene complement(56182374..56184090)
/gene="LOC389493"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/gene="ERV3-1"
/gene_synonym="envR; ERV-R; ERV3; ERVR; FLJ23884; HERV-R;
HERVR"
/note="HERV-R_7q21.2 provirus ancestral Env polyprotein;
ERV-3 envelope protein; ERV-R envelope protein; HERV-R
envelope protein; endogenous retroviral sequence 3;
Derived by automated computational analysis using gene
prediction method: Curated Genomic."
/codon_start=1
/product="HERV-R_7q21.2 provirus ancestral Env polyprotein
precursor"
/protein_id="NP_001007254.2"
/db_xref="GI:145651814"
/db_xref="CCDS:CCDS47595.1"
/db_xref="GeneID:2086"
/db_xref="HGNC:3454"
/db_xref="MIM:131170"
gene 64498643..64498947
/gene="LOC441241"
/note="Derived by automated computational analysis using
gene prediction method: Curated Genomic."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
CDS complement(join(65425884..65426050,65429310..65429445,
65432718..65432894,65435269..65435353,65439282..65439428,
65439513..65439691,65439906..65440058,65441002..65441189,
65444386..65444528,65444714..65444898,65445211..65445396,
65446961..65447170))
/gene="GUSB"
/gene_synonym="BG; FLJ39445; MPS7"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="beta-glucuronidase precursor"
/protein_id="NP_000172.2"
/db_xref="GI:268834192"
/db_xref="CCDS:CCDS5530.1"
/db_xref="GeneID:2990"
/db_xref="HGNC:4696"
/db_xref="HPRD:02018"
/db_xref="MIM:611499"
gene complement(65490168..65493644)
/gene="LOC100419772"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:8326"
/db_xref="HGNC:4047"
/db_xref="HPRD:03460"
/db_xref="MIM:601766"
CDS 72848338..72850113
/gene="FZD9"
/gene_synonym="CD349; FZD3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="frizzled-9 precursor"
/protein_id="NP_003499.1"
/db_xref="GI:4503835"
/db_xref="CCDS:CCDS5548.1"
/db_xref="GeneID:8326"
/db_xref="HGNC:4047"
/db_xref="HPRD:03460"
/db_xref="MIM:601766"
gene complement(72854728..72936615)
/gene="BAZ1B"
/gene_synonym="WBSCR10; WBSCR9; WSTF"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
73461026..73461097,73462005..73462046,73462472..73462531,
73462833..73462886,73466080..73466169,73466254..73466313,
73467493..73467639,73469046..73469099,73470601..73470765,
73471002..73471043,73471970..73472026,73474216..73474377,
73474470..73474514,73474706..73474831,73475431..73475469,
73477483..73477554,73477640..73477699,73477951..73478025,
73480024..73480062,73480274..73480327,73481062..73481106,
73482987..73483030)
/gene="ELN"
/gene_synonym="FLJ38671; FLJ43523; SVAS; WBS; WS"
/note="isoform a precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="elastin isoform a precursor"
/protein_id="NP_000492.2"
/db_xref="GI:126352440"
/db_xref="CCDS:CCDS5562.2"
/db_xref="GeneID:2006"
/db_xref="HGNC:3327"
/db_xref="MIM:130160"
CDS join(73442518..73442599,73449694..73449744,
73452037..73452069,73455546..73455581,73456944..73457036,
73457314..73457364,73457448..73457498,73458209..73458250,
73459552..73459623,73460518..73460547,73461026..73461097,
73462005..73462046,73462472..73462531,73462833..73462886,
73466080..73466169,73466254..73466313,73467493..73467639,
73469046..73469099,73470601..73470765,73471002..73471043,
73474216..73474377,73474470..73474514,73474706..73474831,
73475431..73475469,73477483..73477554,73477640..73477699,
73477951..73478025,73480024..73480062,73481062..73481106,
73482987..73483030)
/gene="ELN"
/gene_synonym="FLJ38671; FLJ43523; SVAS; WBS; WS"
/note="isoform b precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="elastin isoform b precursor"
/protein_id="NP_001075221.1"
/db_xref="GI:126352700"
/db_xref="CCDS:CCDS43599.1"
/db_xref="GeneID:2006"
/db_xref="HGNC:3327"
/db_xref="MIM:130160"
CDS join(73442518..73442599,73449694..73449744,
73450885..73450914,73452037..73452069,73455546..73455581,
73456944..73457036,73457314..73457364,73457433..73457498,
73458209..73458250,73459552..73459623,73460518..73460547,
73461026..73461097,73462005..73462046,73462472..73462531,
73462833..73462886,73466080..73466169,73466254..73466313,
73467493..73467639,73469046..73469099,73470601..73470765,
73471002..73471043,73474216..73474377,73474470..73474514,
73474706..73474831,73475431..73475469,73477483..73477554,
73477640..73477699,73477951..73478025,73480024..73480062,
73481062..73481106,73482987..73483030)
/gene="ELN"
/gene_synonym="FLJ38671; FLJ43523; SVAS; WBS; WS"
/note="isoform c precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="elastin isoform c precursor"
/protein_id="NP_001075222.1"
/db_xref="GI:126352322"
/db_xref="CCDS:CCDS47611.1"
/db_xref="GeneID:2006"
/db_xref="HGNC:3327"
/db_xref="MIM:130160"
CDS join(73442518..73442599,73449694..73449744,
73450885..73450914,73452037..73452069,73455546..73455581,
73456944..73457036,73457314..73457364,73457433..73457498,
73458209..73458250,73459552..73459623,73460518..73460547,
73461026..73461097,73462005..73462046,73462472..73462531,
73462833..73462886,73466080..73466169,73466254..73466313,
73467493..73467639,73469046..73469099,73470601..73470765,
73471002..73471043,73471970..73472026,73474216..73474377,
73474470..73474514,73474706..73474831,73475431..73475469,
73477483..73477554,73477640..73477699,73477951..73478025,
73480024..73480062,73481062..73481106,73482987..73483030)
/gene="ELN"
/gene_synonym="FLJ38671; FLJ43523; SVAS; WBS; WS"
/note="isoform d precursor is encoded by transcript
variant 4; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="elastin isoform d precursor"
/protein_id="NP_001075223.1"
/db_xref="GI:126352446"
/db_xref="CCDS:CCDS43598.1"
/db_xref="GeneID:2006"
/db_xref="HGNC:3327"
/db_xref="MIM:130160"
CDS join(73442518..73442599,73449694..73449744,
73450885..73450914,73452037..73452069,73455546..73455581,
73456944..73457036,73457314..73457364,73457448..73457498,
73458209..73458250,73459552..73459623,73460518..73460547,
73461026..73461097,73462005..73462046,73462472..73462531,
73462833..73462886,73466080..73466169,73466254..73466313,
73467493..73467639,73469046..73469099,73470601..73470765,
73471002..73471043,73474216..73474377,73474470..73474514,
73474706..73474831,73475431..73475469,73477483..73477554,
73477640..73477699,73477951..73478025,73480024..73480062,
73480274..73480327,73481062..73481106,73482987..73483030)
/gene="ELN"
/gene_synonym="FLJ38671; FLJ43523; SVAS; WBS; WS"
/note="isoform e precursor is encoded by transcript
variant 5; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="elastin isoform e precursor"
/protein_id="NP_001075224.1"
/db_xref="GI:126352608"
/db_xref="CCDS:CCDS47612.1"
/db_xref="GeneID:2006"
/db_xref="HGNC:3327"
/db_xref="MIM:130160"
gene 73498107..73536855
/gene="LIMK1"
/gene_synonym="LIMK; LIMK-1"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:05262"
/db_xref="MIM:604697"
CDS complement(join(75399011..75399107,75401207..75401321,
75401422..75401494))
/gene="CCL26"
/gene_synonym="IMAC; MGC126714; MIP-4a; MIP-4alpha;
SCYA26; TSC-1"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="C-C motif chemokine 26 precursor"
/protein_id="NP_006063.1"
/db_xref="GI:5174671"
/db_xref="CCDS:CCDS5578.1"
/db_xref="GeneID:10344"
/db_xref="HGNC:10625"
/db_xref="HPRD:05262"
/db_xref="MIM:604697"
gene complement(75441114..75443033)
/gene="CCL24"
/gene_synonym="Ckb-6; MPIF-2; MPIF2; SCYA24"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:10623"
/db_xref="HPRD:03931"
/db_xref="MIM:602495"
CDS complement(join(75441114..75441282,75442624..75442741,
75442961..75443033))
/gene="CCL24"
/gene_synonym="Ckb-6; MPIF-2; MPIF2; SCYA24"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="C-C motif chemokine 24 precursor"
/protein_id="NP_002982.2"
/db_xref="GI:22165427"
/db_xref="CCDS:CCDS34670.1"
/db_xref="GeneID:6369"
/db_xref="HGNC:10623"
/db_xref="HPRD:03931"
/db_xref="MIM:602495"
gene 75464899..75465459
/gene="LOC100129130"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:154100"
CDS join(75677479..75677544,75684148..75684316,
75686728..75686811,75687287..75687396,75689691..75689816,
75692833..75692910,75693657..75693756,75694120..75694271,
75695597..75695728)
/gene="MDH2"
/gene_synonym="M-MDH; MDH; MGC:3559; MOR1"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="malate dehydrogenase, mitochondrial precursor"
/protein_id="NP_005909.2"
/db_xref="GI:21735621"
/db_xref="CCDS:CCDS5581.1"
/db_xref="GeneID:4191"
/db_xref="HGNC:6971"
/db_xref="HPRD:01099"
/db_xref="MIM:154100"
gene complement(75742228..75742753)
/gene="LOC645324"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
CDS complement(join(76019376..76019692,76021281..76021358,
76022722..76023033,76023147..76023221,76024570..76024647,
76026835..76027149,76028037..76028114,76029603..76029908,
76030325..76030360,76033624..76033756))
/gene="SRCRB4D"
/gene_synonym="S4D-SRCRB; SRCRB-S4D; SSC4D"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="scavenger receptor cysteine-rich
domain-containing group B protein precursor"
/protein_id="NP_542782.1"
/db_xref="GI:18152779"
/db_xref="CCDS:CCDS5585.1"
/db_xref="GeneID:136853"
/db_xref="HGNC:14461"
/db_xref="HPRD:06364"
/db_xref="MIM:607639"
gene 76026841..76071388
/gene="ZP3"
/gene_synonym="Zp-3; ZP3A; ZP3B; ZPC"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GI:160358849"
/db_xref="GeneID:7784"
/db_xref="HGNC:13189"
/db_xref="MIM:182889"
/db_xref="HPRD:01690"
CDS join(76054282..76054593,76058832..76058950,
76062244..76062347,76062787..76062964,76063355..76063472,
76069567..76069658,76069792..76069928,76071159..76071373)
/gene="ZP3"
/gene_synonym="Zp-3; ZP3A; ZP3B; ZPC"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="zona pellucida sperm-binding protein 3 isoform 1
precursor"
/protein_id="NP_001103824.1"
/db_xref="GI:160358850"
/db_xref="CCDS:CCDS47618.1"
/db_xref="GeneID:7784"
/db_xref="HGNC:13189"
/db_xref="HPRD:01690"
/db_xref="MIM:182889"
CDS join(76054435..76054593,76058832..76058950,
76062244..76062347,76062787..76062964,76063355..76063472,
76069567..76069658,76069792..76069928,76071159..76071373)
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:10875"
/db_xref="HGNC:3696"
/db_xref="HPRD:16098"
/db_xref="MIM:605351"
CDS complement(join(76825596..76826302,76828498..76829110))
/gene="FGL2"
/gene_synonym="pT49; T49"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="fibroleukin precursor"
/protein_id="NP_006673.1"
/db_xref="GI:5730075"
/db_xref="CCDS:CCDS5591.1"
/db_xref="GeneID:10875"
/db_xref="HGNC:3696"
/db_xref="HPRD:16098"
/db_xref="MIM:605351"
gene complement(76940068..77045717)
/gene="PION"
/gene_synonym="DKFZp667B242; GSAP; MGC126548"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
80380585..80380652,80387647..80387804,80390932..80390973,
80394471..80394559,80418622..80418844,80427408..80427552,
80430073..80430142,80431981..80432095,80433422..80433564,
80434955..80435074,80439927..80440017,80447615..80447734,
80456741..80456803,80457901..80458061,80545995..80546097))
/gene="SEMA3C"
/gene_synonym="SEMAE; SemE"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="semaphorin-3C precursor"
/protein_id="NP_006370.1"
/db_xref="GI:5454048"
/db_xref="CCDS:CCDS5596.1"
/db_xref="GeneID:10512"
/db_xref="HGNC:10725"
/db_xref="HPRD:04034"
/db_xref="MIM:602645"
gene 80820677..80821325
/gene="LOC100420647"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:142409"
CDS complement(join(81331897..81332073,81334706..81334851,
81334963..81335069,81335603..81335743,81336606..81336680,
81339463..81339559,81340797..81340835,81346548..81346681,
81350061..81350163,81355206..81355333,81358921..81359095,
81372669..81372787,81374316..81374436,81381436..81381563,
81386505..81386619,81388008..81388120,81392023..81392188,
81399200..81399287))
/gene="HGF"
/gene_synonym="DFNB39; F-TCF; HGFB; HPTA; SF"
/note="isoform 3 precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="hepatocyte growth factor isoform 3 precursor"
/protein_id="NP_001010932.1"
/db_xref="GI:58533170"
/db_xref="CCDS:CCDS47626.1"
/db_xref="GeneID:3082"
/db_xref="HGNC:4893"
/db_xref="HPRD:00799"
/db_xref="MIM:142409"
mRNA complement(join(81372007..81372265,81372669..81372787,
81374316..81374436,81381436..81381578,81386505..81386619,
81388008..81388120,81392023..81392188,81399200..81399452))
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GI:58533164"
/db_xref="GeneID:3082"
/db_xref="HGNC:4893"
/db_xref="HPRD:00799"
/db_xref="MIM:142409"
CDS complement(join(81372258..81372265,81372669..81372787,
81374316..81374436,81381436..81381578,81386505..81386619,
81388008..81388120,81392023..81392188,81399200..81399287))
/gene="HGF"
/gene_synonym="DFNB39; F-TCF; HGFB; HPTA; SF"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="hepatocyte growth factor isoform 2 precursor"
/protein_id="NP_001010931.1"
/db_xref="GI:58533163"
/db_xref="CCDS:CCDS47627.1"
/db_xref="GeneID:3082"
/db_xref="HGNC:4893"
/db_xref="HPRD:00799"
/db_xref="MIM:142409"
CDS complement(join(81372258..81372265,81372669..81372787,
81374316..81374436,81381436..81381563,81386505..81386619,
81388008..81388120,81392023..81392188,81399200..81399287))
/gene="HGF"
/gene_synonym="DFNB39; F-TCF; HGFB; HPTA; SF"
/note="isoform 4 precursor is encoded by transcript
variant 4; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="hepatocyte growth factor isoform 4 precursor"
/protein_id="NP_001010933.1"
/db_xref="GI:58533165"
/db_xref="CCDS:CCDS47628.1"
/db_xref="GeneID:3082"
/db_xref="HGNC:4893"
/db_xref="HPRD:00799"
/db_xref="MIM:142409"
mRNA complement(join(81380216..81381578,81386505..81386619,
81388008..81388120,81392023..81392188,81399200..81399452))
/gene="HGF"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/transcript_id="NM_001010934.1"
/db_xref="GI:58533166"
/db_xref="GeneID:3082"
/db_xref="HGNC:4893"
/db_xref="HPRD:00799"
/db_xref="MIM:142409"
CDS complement(join(81381428..81381578,81386505..81386619,
81388008..81388120,81392023..81392188,81399200..81399287))
/gene="HGF"
/gene_synonym="DFNB39; F-TCF; HGFB; HPTA; SF"
/note="isoform 5 precursor is encoded by transcript
variant 5; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="hepatocyte growth factor isoform 5 precursor"
/protein_id="NP_001010934.1"
/db_xref="GI:58533167"
/db_xref="CCDS:CCDS47629.1"
/db_xref="GeneID:3082"
/db_xref="HGNC:4893"
/db_xref="HPRD:00799"
/db_xref="MIM:142409"
gene complement(81579418..82073031)
/gene="CACNA2D1"
/gene_synonym="CACNA2; CACNL2A; CCHL2A"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:608166"
/db_xref="HPRD:11545"
CDS complement(join(82996902..82997354,83014610..83014749,
83016299..83016366,83021871..83022037,83023613..83023654,
83025954..83026045,83029344..83029566,83031948..83032092,
83034766..83034835,83035261..83035375,83036413..83036555,
83037684..83037803,83047706..83047799,83095798..83095917,
83098559..83098618,83119430..83119590,83277744..83277858))
/gene="SEMA3E"
/gene_synonym="coll-5; KIAA0331; M-SEMAH; M-SemaK; SEMAH"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="semaphorin-3E isoform 1 precursor"
/protein_id="NP_036563.1"
/db_xref="GI:6912650"
/db_xref="CCDS:CCDS34674.1"
/db_xref="GeneID:9723"
/db_xref="HGNC:10727"
/db_xref="HPRD:11545"
/db_xref="MIM:608166"
CDS complement(join(82996902..82997354,83014610..83014749,
83016299..83016366,83021871..83022037,83023613..83023654,
83025954..83026045,83029344..83029566,83031948..83032092,
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
83631271..83631362,83634655..83634874,83636669..83636813,
83640338..83640407,83640499..83640613,83643525..83643667,
83675640..83675759,83689781..83689874,83739786..83739905,
83758439..83758501,83764110..83764267,83823791..83823902))
/gene="SEMA3A"
/gene_synonym="coll-1; Hsema-I; Hsema-III; MGC133243;
SEMA1; SEMAD; SEMAIII; SEMAL; SemD"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="semaphorin-3A precursor"
/protein_id="NP_006071.1"
/db_xref="GI:5174673"
/db_xref="CCDS:CCDS5599.1"
/db_xref="GeneID:10371"
/db_xref="HGNC:10723"
/db_xref="HPRD:04908"
/db_xref="MIM:603961"
gene complement(84157433..84158146)
/gene="RPL7P30"
/gene_synonym="RPL7_13_818"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
84642098..84642162,84644375..84644532,84647568..84647609,
84649549..84649637,84651707..84651929,84666205..84666349,
84669989..84670058,84671487..84671601,84685033..84685175,
84694740..84694868,84697507..84697600,84702278..84702397,
84710833..84710895,84727121..84727281,84751057..84751207))
/gene="SEMA3D"
/gene_synonym="coll-2; MGC39708; Sema-Z2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="semaphorin-3D precursor"
/protein_id="NP_689967.2"
/db_xref="GI:41406086"
/db_xref="CCDS:CCDS34676.1"
/db_xref="GeneID:223117"
/db_xref="HGNC:10726"
/db_xref="HPRD:15321"
/db_xref="MIM:609907"
gene 84657067..84659197
/gene="LOC100289643"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:4595"
/db_xref="HPRD:03070"
/db_xref="MIM:601115"
CDS join(86394462..86394929,86415577..86416432,
86468155..86469221,86479686..86479860,86493598..86493671)
/gene="GRM3"
/gene_synonym="GLUR3; GPRC1C; mGlu3; MGLUR3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="metabotropic glutamate receptor 3 precursor"
/protein_id="NP_000831.2"
/db_xref="GI:46358417"
/db_xref="CCDS:CCDS5600.1"
/db_xref="GeneID:2913"
/db_xref="HGNC:4595"
/db_xref="HPRD:03070"
/db_xref="MIM:601115"
gene complement(86506222..86689014)
/gene="KIAA1324L"
/gene_synonym="EIG121L; FLJ31340"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:8321"
/db_xref="HGNC:4038"
/db_xref="HPRD:04558"
/db_xref="MIM:603408"
CDS 90894196..90896139
/gene="FZD1"
/gene_synonym="DKFZp564G072; FLJ95923"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="frizzled-1 precursor"
/protein_id="NP_003496.1"
/db_xref="GI:4503825"
/db_xref="CCDS:CCDS5620.1"
/db_xref="GeneID:8321"
/db_xref="HGNC:4038"
/db_xref="HPRD:04558"
/db_xref="MIM:603408"
gene complement(90949314..90950509)
/gene="NIPA2P1"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:21463"
/db_xref="HPRD:08373"
/db_xref="MIM:602318"
CDS complement(join(91502908..91504078,91509369..91509397))
/gene="MTERF"
/gene_synonym="MGC131634"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="transcription termination factor, mitochondrial
precursor"
/protein_id="NP_008911.1"
/db_xref="GI:5902010"
/db_xref="CCDS:CCDS5621.1"
/db_xref="GeneID:7978"
/db_xref="HGNC:21463"
/db_xref="HPRD:08373"
/db_xref="MIM:602318"
gene 91570189..91739987
/gene="AKAP9"
/gene_synonym="AKAP-9; AKAP350; AKAP450; CG-NAP; HYPERION;
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
glycoprotein; HERV-W_7q21.2 provirus ancestral Env
polyprotein; human endogenous retrovirus W envC7-1
envelope protein; syncytin A; envelope polyprotein gPr73;
syncytin-1; env-W; HERV-W envelope protein; endogenous
retroviral family W, env(C7), member 1; endogenous
retrovirus group W member 1; Derived by automated
computational analysis using gene prediction method:
Curated Genomic."
/codon_start=1
/product="HERV-W_7q21.2 provirus ancestral Env polyprotein
precursor"
/protein_id="NP_001124397.1"
/db_xref="GI:195963433"
/db_xref="CCDS:CCDS5626.1"
/db_xref="GeneID:30816"
/db_xref="HGNC:13525"
/db_xref="MIM:604659"
CDS complement(92098079..92099695)
/gene="ERVW-1"
/gene_synonym="ENV; ENVW; ERVWE1; HERV-7q; HERV-W-ENV;
HERV7Q; HERVW; HERVWENV"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
glycoprotein; HERV-W_7q21.2 provirus ancestral Env
polyprotein; human endogenous retrovirus W envC7-1
envelope protein; syncytin A; envelope polyprotein gPr73;
syncytin-1; env-W; HERV-W envelope protein; endogenous
retroviral family W, env(C7), member 1; endogenous
retrovirus group W member 1; Derived by automated
computational analysis using gene prediction method:
Curated Genomic."
/codon_start=1
/product="HERV-W_7q21.2 provirus ancestral Env polyprotein
precursor"
/protein_id="NP_055405.3"
/db_xref="GI:48949851"
/db_xref="CCDS:CCDS5626.1"
/db_xref="GeneID:30816"
/db_xref="HGNC:13525"
/db_xref="MIM:604659"
gene complement(92116337..92157845)
/gene="PEX1"
/gene_synonym="ZWS; ZWS1"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:1440"
/db_xref="HPRD:00239"
/db_xref="MIM:114131"
CDS complement(join(93055668..93055901,93063565..93063606,
93065264..93065482,93067372..93067438,93067522..93067582,
93072916..93073069,93090133..93090259,93098027..93098118,
93101687..93101799,93106870..93106980,93108666..93108819,
93116243..93116293))
/gene="CALCR"
/gene_synonym="CRT; CT-R; CTR; CTR1"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="calcitonin receptor isoform 2 precursor"
/protein_id="NP_001733.1"
/db_xref="GI:4502547"
/db_xref="CCDS:CCDS5631.1"
/db_xref="GeneID:799"
/db_xref="HGNC:1440"
/db_xref="HPRD:00239"
/db_xref="MIM:114131"
CDS complement(join(93055668..93055901,93063565..93063606,
93065264..93065482,93067372..93067438,93067522..93067582,
93072916..93073069,93090133..93090259,93098027..93098118,
93101687..93101799,93106870..93106980,93108666..93108819,
93116243..93116293))
/gene="CALCR"
/gene_synonym="CRT; CT-R; CTR; CTR1"
/note="isoform 2 precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="calcitonin receptor isoform 2 precursor"
/protein_id="NP_001158210.1"
/db_xref="GI:260064027"
/db_xref="CCDS:CCDS5631.1"
/db_xref="GeneID:799"
/db_xref="HGNC:1440"
/db_xref="HPRD:00239"
/db_xref="MIM:114131"
gene complement(93112072..93112167)
/gene="MIR653"
/gene_synonym="hsa-mir-653; MIRN653"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:11761"
/db_xref="HPRD:08962"
/db_xref="MIM:600033"
CDS complement(join(93516132..93516208,93516573..93516743,
93518347..93518535,93519449..93519631,93519903..93519990))
/gene="TFPI2"
/gene_synonym="FLJ21164; PP5; REF1; TFPI-2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="tissue factor pathway inhibitor 2 precursor"
/protein_id="NP_006519.1"
/db_xref="GI:5730091"
/db_xref="CCDS:CCDS5632.1"
/db_xref="GeneID:7980"
/db_xref="HGNC:11761"
/db_xref="HPRD:08962"
/db_xref="MIM:600033"
gene 93535820..93540485
/gene="GNGT1"
/gene_synonym="GNG1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:4411"
/db_xref="HPRD:01805"
/db_xref="MIM:189970"
CDS join(93536059..93536154,93540102..93540230)
/gene="GNGT1"
/gene_synonym="GNG1"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="guanine nucleotide-binding protein G(T) subunit
gamma-T1 precursor"
/protein_id="NP_068774.1"
/db_xref="GI:11386179"
/db_xref="CCDS:CCDS5633.1"
/db_xref="GeneID:2792"
/db_xref="HGNC:4411"
/db_xref="HPRD:01805"
/db_xref="MIM:189970"
gene 93551016..93555826
/gene="GNG11"
/gene_synonym="GNGT11"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:4403"
/db_xref="HPRD:11979"
/db_xref="MIM:604390"
CDS join(93551450..93551545,93555403..93555528)
/gene="GNG11"
/gene_synonym="GNGT11"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="guanine nucleotide-binding protein
G(I)/G(S)/G(O) subunit gamma-11 precursor"
/protein_id="NP_004117.1"
/db_xref="GI:4758448"
/db_xref="CCDS:CCDS5634.1"
/db_xref="GeneID:2791"
/db_xref="HGNC:4403"
/db_xref="HPRD:11979"
/db_xref="MIM:604390"
gene complement(93621000..93633690)
/gene="BET1"
/gene_synonym="DKFZp781C0425; HBET1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
94051211..94051264,94052269..94052430,94053648..94053755,
94054429..94054536,94054922..94054975,94055062..94055169,
94055310..94055363,94055735..94055842,94056320..94056373,
94056500..94056607,94056939..94057197,94057605..94057789,
94058500..94058742,94059559..94059705)
/gene="COL1A2"
/gene_synonym="OI4"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="collagen alpha-2(I) chain precursor"
/protein_id="NP_000080.2"
/db_xref="GI:48762934"
/db_xref="CCDS:CCDS34682.1"
/db_xref="GeneID:1278"
/db_xref="HGNC:2198"
/db_xref="HPRD:00363"
/db_xref="MIM:120160"
gene complement(94042445..94060553)
/gene="LOC100506027"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
94166784..94167206,94168279..94168368,94173723..94173842,
94174857..94175013,94176408..94176487,94178845..94178946,
94180650..94180790,94181662..94181739,94183795..94183887,
94184804..94185070)
/gene="CASD1"
/gene_synonym="C7orf12; FLJ21213; FLJ21879; FLJ41901;
NBLA04196"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="CAS1 domain-containing protein 1 precursor"
/protein_id="NP_075051.4"
/db_xref="GI:170784865"
/db_xref="CCDS:CCDS5636.1"
/db_xref="GeneID:64921"
/db_xref="HGNC:16014"
/db_xref="HPRD:13004"
/db_xref="MIM:611686"
gene complement(94214536..94285521)
/gene="SGCE"
/gene_synonym="DYT11; ESG"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:168820"
CDS complement(join(94928256..94928414,94931517..94931645,
94935597..94935678,94937323..94937523,94940763..94940889,
94944634..94944802,94946046..94946101,94947635..94947705,
94953714..94953787))
/gene="PON1"
/gene_synonym="ESA; MVCD5; PON"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="serum paraoxonase/arylesterase 1 precursor"
/protein_id="NP_000437.3"
/db_xref="GI:19923106"
/db_xref="CCDS:CCDS5638.1"
/db_xref="GeneID:5444"
/db_xref="HGNC:9204"
/db_xref="HPRD:01351"
/db_xref="MIM:168820"
gene 94979476..94981079
/gene="LOC100533722"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
CDS complement(join(95214953..95215093,95216322..95216435,
95216730..95216840,95217039..95217137,95218952..95219028,
95221300..95221377,95221823..95221909,95222072..95222256,
95223011..95223082,95224335..95224476,95225476..95225605))
/gene="PDK4"
/gene_synonym="FLJ40832"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="pyruvate dehydrogenase kinase, isozyme 4
precursor"
/protein_id="NP_002603.1"
/db_xref="GI:4505693"
/db_xref="CCDS:CCDS5643.1"
/db_xref="GeneID:5166"
/db_xref="HGNC:8812"
/db_xref="HPRD:03957"
/db_xref="MIM:602527"
gene 95401818..95727736
/gene="DYNC1I1"
/gene_synonym="DNCI1; DNCIC1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GI:187761338"
/db_xref="GeneID:57001"
/db_xref="HGNC:21752"
/db_xref="HPRD:16471"
CDS join(96747036..96747209,96810324..96810527)
/gene="ACN9"
/gene_synonym="DC11"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="protein ACN9 homolog, mitochondrial precursor"
/protein_id="NP_064571.1"
/db_xref="GI:9910180"
/db_xref="CCDS:CCDS5648.1"
/db_xref="GeneID:57001"
/db_xref="HGNC:21752"
/db_xref="HPRD:16471"
gene complement(96830134..96830782)
/gene="RPL7AP40"
/gene_synonym="RPL7A_18_822"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
gene prediction method: BestRefseq."
/db_xref="GeneID:6863"
/db_xref="HGNC:11517"
/db_xref="HPRD:08876"
/db_xref="MIM:162320"
mRNA join(97361271..97361507,97361916..97362047,
97363035..97363131,97363560..97363604,97364138..97364161,
97369186..97369784)
/gene="TAC1"
/gene_synonym="Hs.2563; NK2; NKNA; NPK; TAC2"
/product="tachykinin, precursor 1, transcript variant
alpha"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/transcript_id="NM_013996.2"
/db_xref="GI:166158920"
/db_xref="GeneID:6863"
/db_xref="HGNC:11517"
/db_xref="MIM:162320"
/db_xref="HPRD:08876"
mRNA join(97361271..97361507,97361916..97362047,
97363035..97363131,97363560..97363604,97364138..97364161,
97365611..97365664,97369186..97369784)
/gene="TAC1"
/gene_synonym="Hs.2563; NK2; NKNA; NPK; TAC2"
/product="tachykinin, precursor 1, transcript variant
beta"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/transcript_id="NM_003182.2"
/db_xref="GI:166158917"
/db_xref="GeneID:6863"
/db_xref="HGNC:11517"
/db_xref="HPRD:08876"
/db_xref="MIM:162320"
mRNA join(97361271..97361507,97361916..97362047,
97363035..97363131,97364138..97364161,97369186..97369784)
/gene="TAC1"
/gene_synonym="Hs.2563; NK2; NKNA; NPK; TAC2"
/product="tachykinin, precursor 1, transcript variant
delta"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/transcript_id="NM_013998.2"
/db_xref="GI:166158918"
/db_xref="GeneID:6863"
/db_xref="HGNC:11517"
/db_xref="MIM:162320"
/db_xref="HPRD:08876"
mRNA join(97361271..97361507,97361916..97362047,
97363035..97363131,97364138..97364161,97365611..97365664,
97369186..97369784)
/gene="TAC1"
/gene_synonym="Hs.2563; NK2; NKNA; NPK; TAC2"
/product="tachykinin, precursor 1, transcript variant
gamma"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/transcript_id="NM_013997.2"
/db_xref="GI:166158919"
/db_xref="GeneID:6863"
/db_xref="HGNC:11517"
/db_xref="MIM:162320"
/db_xref="HPRD:08876"
CDS join(97361925..97362047,97363035..97363131,
97363560..97363604,97364138..97364161,97369186..97369232)
/gene="TAC1"
/gene_synonym="Hs.2563; NK2; NKNA; NPK; TAC2"
/note="isoform alpha precursor is encoded by transcript
variant alpha; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="protachykinin-1 isoform alpha precursor"
/protein_id="NP_054702.1"
/db_xref="GI:7770075"
/db_xref="CCDS:CCDS5650.1"
/db_xref="GeneID:6863"
/db_xref="HGNC:11517"
/db_xref="HPRD:08876"
/db_xref="MIM:162320"
CDS join(97361925..97362047,97363035..97363131,
97363560..97363604,97364138..97364161,97365611..97365664,
97369186..97369232)
/gene="TAC1"
/gene_synonym="Hs.2563; NK2; NKNA; NPK; TAC2"
/note="isoform beta precursor is encoded by transcript
variant beta; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="protachykinin-1 isoform beta precursor"
/protein_id="NP_003173.1"
/db_xref="GI:4507341"
/db_xref="CCDS:CCDS5649.1"
/db_xref="GeneID:6863"
/db_xref="HGNC:11517"
/db_xref="HPRD:08876"
/db_xref="MIM:162320"
CDS join(97361925..97362047,97363035..97363131,
97364138..97364161,97369186..97369232)
/gene="TAC1"
/gene_synonym="Hs.2563; NK2; NKNA; NPK; TAC2"
/note="isoform delta precursor is encoded by transcript
variant delta; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="protachykinin-1 isoform delta precursor"
/protein_id="NP_054704.1"
/db_xref="GI:7770079"
/db_xref="GeneID:6863"
/db_xref="HGNC:11517"
/db_xref="MIM:162320"
/db_xref="HPRD:08876"
CDS join(97361925..97362047,97363035..97363131,
97364138..97364161,97365611..97365664,97369186..97369232)
/gene="TAC1"
/gene_synonym="Hs.2563; NK2; NKNA; NPK; TAC2"
/note="isoform gamma precursor is encoded by transcript
variant gamma; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="protachykinin-1 isoform gamma precursor"
/protein_id="NP_054703.1"
/db_xref="GI:7770077"
/db_xref="CCDS:CCDS5651.1"
/db_xref="GeneID:6863"
/db_xref="HGNC:11517"
/db_xref="HPRD:08876"
/db_xref="MIM:162320"
gene complement(97481429..97501854)
/gene="ASNS"
/gene_synonym="TS11"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
97770709..97770853,97780694..97780767,97784070..97784188,
97788650..97788737,97800853..97800986,97814363..97814447,
97816189..97816310,97820040..97820189,97820926..97823884,
97832886..97833018,97833256..97833498,97834776..97834804)
/gene="LMTK2"
/gene_synonym="AATYK2; BREK; cprk; FLJ46659; KIAA1079;
KPI-2; KPI2; LMR2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="serine/threonine-protein kinase LMTK2 precursor"
/protein_id="NP_055731.2"
/db_xref="GI:38016937"
/db_xref="CCDS:CCDS5654.1"
/db_xref="GeneID:22853"
/db_xref="HGNC:17880"
/db_xref="HPRD:13994"
/db_xref="MIM:610989"
gene 97841566..97842271
/gene="BHLHA15"
/gene_synonym="BHLHB8; MIST1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:7953"
/db_xref="HPRD:02853"
/db_xref="MIM:600750"
CDS join(98246774..98247199,98248955..98249171,
98254234..98254478,98256477..98256656,98257714..98257941)
/gene="NPTX2"
/gene_synonym="NARP; NP-II; NP2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="neuronal pentraxin-2 precursor"
/protein_id="NP_002514.1"
/db_xref="GI:28195384"
/db_xref="CCDS:CCDS5657.1"
/db_xref="GeneID:4885"
/db_xref="HGNC:7953"
/db_xref="HPRD:02853"
/db_xref="MIM:600750"
gene complement(98444111..98467673)
/gene="TMEM130"
/gene_synonym="DKFZp761L1417; FLJ42643"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:910"
/db_xref="HPRD:01910"
/db_xref="MIM:194460"
CDS complement(join(99564626..99564909,99565778..99566053,
99569369..99569629,99573568..99573643))
/gene="AZGP1"
/gene_synonym="ZA2G; ZAG"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="zinc-alpha-2-glycoprotein precursor"
/protein_id="NP_001176.1"
/db_xref="GI:4502337"
/db_xref="CCDS:CCDS5680.1"
/db_xref="GeneID:563"
/db_xref="HGNC:910"
/db_xref="HPRD:01910"
/db_xref="MIM:194460"
gene 99578385..99581860
/gene="AZGP1P1"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:14611"
/db_xref="MIM:610047"
CDS join(99717368..99717485,99719882..99720008,
99720104..99720200,99720407..99720529,99722137..99722254,
99722348..99722511)
/gene="CNPY4"
/gene_synonym="MGC40499; PRAT4B"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="protein canopy homolog 4 precursor"
/protein_id="NP_689968.1"
/db_xref="GI:22749479"
/db_xref="CCDS:CCDS34701.1"
/db_xref="GeneID:245812"
/db_xref="HGNC:28631"
/db_xref="HPRD:14611"
/db_xref="MIM:610047"
gene 99724317..99726121
/gene="MBLAC1"
/gene_synonym="MGC39819"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:17051"
CDS complement(join(99767853..99768106,99768884..99769059,
99769162..99769301,99769402..99769548,99769710..99769840,
99771458..99771620,99772308..99772388,99773195..99773517,
99773830..99773988,99774657..99774822))
/gene="GPC2"
/gene_synonym="DKFZp547M109; FLJ38962"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="glypican-2 precursor"
/protein_id="NP_689955.1"
/db_xref="GI:22749459"
/db_xref="CCDS:CCDS5689.1"
/db_xref="GeneID:221914"
/db_xref="HGNC:4450"
/db_xref="HPRD:17051"
gene 99775538..99812010
/gene="STAG3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:18297"
/db_xref="MIM:605342"
CDS join(99955926..99955989,99956313..99956702,
99956960..99957160,99964972..99965000)
/gene="PILRB"
/gene_synonym="FDFACT1; FDFACT2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="paired immunoglobulin-like type 2 receptor beta
precursor"
/protein_id="NP_839956.1"
/db_xref="GI:30179911"
/db_xref="CCDS:CCDS43622.1"
/db_xref="GeneID:29990"
/db_xref="HGNC:18297"
/db_xref="MIM:605342"
gene 99971068..99997722
/gene="PILRA"
/gene_synonym="FDF03"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/transcript_id="NM_178273.1"
/db_xref="GI:30179906"
/db_xref="GeneID:29992"
/db_xref="HGNC:20396"
/db_xref="MIM:605341"
CDS join(99971280..99971343,99971667..99972056,
99987511..99987729,99995502..99995535,99996914..99996963,
99997204..99997235,99997408..99997530)
/gene="PILRA"
/gene_synonym="FDF03"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="paired immunoglobulin-like type 2 receptor alpha
isoform 1 precursor"
/protein_id="NP_038467.2"
/db_xref="GI:30179909"
/db_xref="CCDS:CCDS5691.1"
/db_xref="GeneID:29992"
/db_xref="HGNC:20396"
/db_xref="MIM:605341"
CDS join(99971280..99971343,99971667..99972056,
99995502..99995535,99996914..99996963,99997204..99997235,
99997408..99997530)
/gene="PILRA"
/gene_synonym="FDF03"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="paired immunoglobulin-like type 2 receptor alpha
isoform 2 precursor"
/protein_id="NP_840056.1"
/db_xref="GI:30179905"
/db_xref="CCDS:CCDS5692.1"
/db_xref="GeneID:29992"
/db_xref="HGNC:20396"
/db_xref="MIM:605341"
CDS join(99971280..99971343,99971667..99972056,
99996914..99996963,99997204..99997227)
/gene="PILRA"
/gene_synonym="FDF03"
/note="isoform 3 precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="paired immunoglobulin-like type 2 receptor alpha
isoform 3 precursor"
/protein_id="NP_840057.1"
/db_xref="GI:30179907"
/db_xref="CCDS:CCDS47660.1"
/db_xref="GeneID:29992"
/db_xref="HGNC:20396"
/db_xref="MIM:605341"
gene complement(99998495..100026302)
/gene="ZCWPW1"
/gene_synonym="DKFZp434N0510; FLJ10057; ZCW1"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/gene_synonym="0610037N12Rik; RPP2; RPP20"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/db_xref="GeneID:10248"
/db_xref="HGNC:19949"
/db_xref="HPRD:09357"
/db_xref="MIM:606113"
mRNA join(100303676..100303927,100304444..100305123)
/gene="POP7"
/gene_synonym="0610037N12Rik; RPP2; RPP20"
/product="processing of precursor 7, ribonuclease P/MRP
subunit (S. cerevisiae)"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/transcript_id="NM_005837.2"
/db_xref="GI:153791430"
/db_xref="GeneID:10248"
/db_xref="HGNC:19949"
/db_xref="HPRD:09357"
/db_xref="MIM:606113"
CDS 100304454..100304876
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:00586"
/db_xref="MIM:133170"
CDS join(100318604..100318616,100319181..100319326,
100319585..100319671,100320287..100320466,
100320601..100320756)
/gene="EPO"
/gene_synonym="EP; MGC138142; MVCD2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="erythropoietin precursor"
/protein_id="NP_000790.2"
/db_xref="GI:62240997"
/db_xref="CCDS:CCDS5705.1"
/db_xref="GeneID:2056"
/db_xref="HGNC:3415"
/db_xref="HPRD:00586"
/db_xref="MIM:133170"
gene 100331249..100395419
/gene="ZAN"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
100411541..100411643,100414814..100414979,
100416142..100416266,100417179..100417511,
100417763..100417918,100419893..100420289,
100421266..100421553,100421825..100421895,
100424601..100424652))
/gene="EPHB4"
/gene_synonym="HTK; MYK1; TYRO11"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="ephrin type-B receptor 4 precursor"
/protein_id="NP_004435.3"
/db_xref="GI:32528301"
/db_xref="CCDS:CCDS5706.1"
/db_xref="GeneID:2050"
/db_xref="HGNC:3395"
/db_xref="HPRD:02481"
/db_xref="MIM:600011"
gene 100450358..100464634
/gene="SLC12A9"
/gene_synonym="CIP1; FLJ46905"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/transcript_id="NM_000665.3"
/db_xref="GI:88999567"
/db_xref="GeneID:43"
/db_xref="HGNC:108"
/db_xref="HPRD:00010"
/db_xref="MIM:100740"
CDS complement(join(100487835..100487956,100488790..100488959,
100489955..100490439,100490786..100491853))
/gene="ACHE"
/gene_synonym="ARACHE; N-ACHE; YT"
/note="isoform E4-E6 precursor is encoded by transcript
variant E4-E6; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="acetylcholinesterase isoform E4-E6 precursor"
/protein_id="NP_000656.1"
/db_xref="GI:4557239"
/db_xref="CCDS:CCDS5709.1"
/db_xref="GeneID:43"
/db_xref="HGNC:108"
/db_xref="HPRD:00010"
/db_xref="MIM:100740"
CDS complement(join(100488579..100488709,100488790..100488959,
100489955..100490439,100490786..100491853))
/gene="ACHE"
/gene_synonym="ARACHE; N-ACHE; YT"
/note="isoform E4-E5 precursor is encoded by transcript
variant E4-E5; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="acetylcholinesterase isoform E4-E5 precursor"
/protein_id="NP_056646.1"
/db_xref="GI:7710112"
/db_xref="CCDS:CCDS5710.1"
/db_xref="GeneID:43"
/db_xref="HGNC:108"
/db_xref="HPRD:00010"
/db_xref="MIM:100740"
gene 100525960..100526215
/gene="RPS29P15"
/gene_synonym="RPS29_10_826"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
100692126..100692253,100692605..100692663,
100693765..100693916,100694894..100694962,
100695084..100695243,100696267..100696428,
100696620..100696717,100699475..100699551,
100701284..100701325)
/gene="MUC17"
/gene_synonym="MUC3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="mucin-17 precursor"
/protein_id="NP_001035194.1"
/db_xref="GI:91982772"
/db_xref="CCDS:CCDS34711.1"
/db_xref="GeneID:140453"
/db_xref="HGNC:16800"
/db_xref="MIM:608424"
gene 100728786..100733909
/gene="TRIM56"
/gene_synonym="DKFZp667O116; FLJ35608; RNF109"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:5054"
/db_xref="HGNC:8583"
/db_xref="MIM:173360"
/db_xref="HPRD:01418"
CDS join(100771675..100771945,100773702..100773935,
100775156..100775350,100776976..100777174,
100778775..100778875,100778996..100779082,
100780282..100780365,100780686..100780723)
/gene="SERPINE1"
/gene_synonym="PAI; PAI-1; PAI1; PLANH1"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="plasminogen activator inhibitor 1 isoform 1
precursor"
/protein_id="NP_000593.1"
/db_xref="GI:10835159"
/db_xref="CCDS:CCDS5711.1"
/db_xref="GeneID:5054"
/db_xref="HGNC:8583"
/db_xref="HPRD:01418"
/db_xref="MIM:173360"
CDS join(100771675..100771764,100771810..100771945,
100773702..100773935,100775156..100775350,
100776976..100777174,100778775..100778875,
100778996..100779082,100780282..100780365,
100780686..100780723)
/gene="SERPINE1"
/gene_synonym="PAI; PAI-1; PAI1; PLANH1"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="plasminogen activator inhibitor 1 isoform 2
precursor"
/protein_id="NP_001158885.1"
/db_xref="GI:259155306"
/db_xref="CCDS:CCDS55140.1"
/db_xref="GeneID:5054"
/db_xref="HGNC:8583"
/db_xref="HPRD:01418"
/db_xref="MIM:173360"
gene 100797686..100804557
/gene="AP1S1"
/gene_synonym="AP19; CLAPS1; FLJ92436; SIGMA1A;
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GI:194688129"
/db_xref="GeneID:7425"
/db_xref="HGNC:12684"
/db_xref="HPRD:03717"
/db_xref="MIM:602186"
CDS complement(100806277..100808124)
/gene="VGF"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="neurosecretory protein VGF precursor"
/protein_id="NP_003369.2"
/db_xref="GI:17136078"
/db_xref="CCDS:CCDS5712.1"
/db_xref="GeneID:7425"
/db_xref="HGNC:12684"
/db_xref="HPRD:03717"
/db_xref="MIM:602186"
gene complement(100813774..100823557)
/gene="C7orf52"
/gene_synonym="DKFZp547K159; FLJ39237"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
100856388..100856485,100858370..100858433,
100859189..100859301,100859444..100859607,
100859691..100859827,100859976..100860067,
100860447..100860555))
/gene="PLOD3"
/gene_synonym="LH3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="procollagen-lysine,2-oxoglutarate 5-dioxygenase
3 precursor"
/protein_id="NP_001075.1"
/db_xref="GI:4505891"
/db_xref="CCDS:CCDS5715.1"
/db_xref="GeneID:8985"
/db_xref="HGNC:9083"
/db_xref="HPRD:04347"
/db_xref="MIM:603066"
gene 100860985..100867471
/gene="ZNHIT1"
/gene_synonym="CG1I; ZNFN4A1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
102948043..102948155,102949399..102949542,
102950762..102950922,102952090..102952175,
102952255..102952343,102952503..102952578,
102952654..102952718)
/gene="PMPCB"
/gene_synonym="Beta-MPP; MPP11; MPPB; MPPP52; P-52"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="mitochondrial-processing peptidase subunit beta
precursor"
/protein_id="NP_004270.2"
/db_xref="GI:94538354"
/db_xref="CCDS:CCDS5730.1"
/db_xref="GeneID:9512"
/db_xref="HGNC:9119"
/db_xref="HPRD:07539"
/db_xref="MIM:603131"
gene complement(102952921..102985320)
/gene="DNAJC2"
/gene_synonym="MPHOSPH11; MPP11; ZRF1; ZUO1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
105660819..105660990,105662644..105662894,
105664827..105665008,105667128..105667141,
105668997..105669028,105671238..105671286,
105672839..105673143)
/gene="CDHR3"
/gene_synonym="CDH28; FLJ23834; FLJ43271; MGC133292;
MGC133293"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="cadherin-related family member 3 precursor"
/protein_id="NP_689963.2"
/db_xref="GI:40255133"
/db_xref="CCDS:CCDS47684.1"
/db_xref="GeneID:222256"
/db_xref="HGNC:26308"
/db_xref="HPRD:08042"
gene complement(105730951..105753057)
/gene="SYPL1"
/gene_synonym="H-SP1; SYPL"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
105909600..105909758,105912976..105913104,
105915392..105915495,105917469..105917625,
105925274..105925330))
/gene="NAMPT"
/gene_synonym="1110035O14Rik; DKFZp666B131; MGC117256;
PBEF; PBEF1; VF; VISFATIN"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="nicotinamide phosphoribosyltransferase
precursor"
/protein_id="NP_005737.1"
/db_xref="GI:5031977"
/db_xref="CCDS:CCDS5737.1"
/db_xref="GeneID:10135"
/db_xref="HGNC:30092"
/db_xref="HPRD:09938"
/db_xref="MIM:608764"
gene complement(106297211..106301634)
/gene="FLJ36031"
/gene_synonym="FLJ11436; FLJ25556; MGC16181"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
107545806..107545949,107546712..107546813,
107555951..107556141,107557239..107557409,
107557718..107557907,107558369..107558506,
107559455..107559544,107559639..107559704)
/gene="DLD"
/gene_synonym="DLDH; E3; GCSL; LAD; PHE3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="dihydrolipoyl dehydrogenase, mitochondrial
precursor"
/protein_id="NP_000099.2"
/db_xref="GI:91199540"
/db_xref="CCDS:CCDS5749.1"
/db_xref="GeneID:1738"
/db_xref="HGNC:2898"
/db_xref="HPRD:02006"
/db_xref="MIM:238331"
gene complement(107564246..107643804)
/gene="LAMB1"
/gene_synonym="CLM; MGC142015"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
107616134..107616322,107618492..107618612,
107621054..107621256,107626467..107626530,
107626620..107626808,107635332..107635405,
107638802..107638937,107642003..107642178,
107643294..107643330))
/gene="LAMB1"
/gene_synonym="CLM; MGC142015"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="laminin subunit beta-1 precursor"
/protein_id="NP_002282.2"
/db_xref="GI:167614504"
/db_xref="CCDS:CCDS5750.1"
/db_xref="GeneID:3912"
/db_xref="HGNC:6486"
/db_xref="HPRD:01029"
/db_xref="MIM:150240"
gene complement(107663996..107770801)
/gene="LAMB4"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
107735673..107735782,107738848..107739027,
107743489..107743677,107744944..107745064,
107746262..107746476,107746954..107747017,
107748076..107748264,107749616..107749689,
107752256..107752391,107756449..107756606,
107763576..107763609))
/gene="LAMB4"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="laminin subunit beta-4 precursor"
/protein_id="NP_031382.2"
/db_xref="GI:143770880"
/db_xref="CCDS:CCDS34732.1"
/db_xref="GeneID:22798"
/db_xref="HGNC:6491"
/db_xref="HPRD:11224"
gene complement(107788071..108096841)
/gene="NRCAM"
/gene_synonym="KIAA0343; MGC138845; MGC138846"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
107831698..107831727,107832173..107832297,
107834468..107834615,107834706..107834872,
107836205..107836316,107838400..107838543,
107847972..107848103,107849865..107850049,
107864169..107864280,107866089..107866145,
107866652..107866822,107871475..107871597,
107872770..107872966,107875027..107875132,
107878196..107878213,107880403..107880508))
/gene="NRCAM"
/gene_synonym="KIAA0343; MGC138845; MGC138846"
/note="isoform A precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="neuronal cell adhesion molecule isoform A
precursor"
/protein_id="NP_001032209.1"
/db_xref="GI:81158226"
/db_xref="CCDS:CCDS47686.1"
/db_xref="GeneID:4897"
/db_xref="HGNC:7994"
/db_xref="HPRD:07207"
/db_xref="MIM:601581"
CDS complement(join(107790355..107790592,107799908..107799986,
107800806..107800937,107816875..107817051,
107818435..107818557,107820667..107820871,
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
107830089..107830190,107832173..107832297,
107834468..107834615,107834706..107834872,
107836205..107836316,107838400..107838543,
107847972..107848103,107849865..107850049,
107864169..107864280,107866089..107866145,
107866652..107866822,107871475..107871597,
107872770..107872966,107875027..107875132,
107880403..107880508))
/gene="NRCAM"
/gene_synonym="KIAA0343; MGC138845; MGC138846"
/note="isoform B precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="neuronal cell adhesion molecule isoform B
precursor"
/protein_id="NP_005001.3"
/db_xref="GI:81158224"
/db_xref="CCDS:CCDS5751.1"
/db_xref="GeneID:4897"
/db_xref="HGNC:7994"
/db_xref="HPRD:07207"
/db_xref="MIM:601581"
CDS complement(join(107790355..107790592,107799908..107799986,
107800806..107800937,107815767..107815802,
107816875..107817051,107818435..107818557,
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
107831698..107831727,107832173..107832297,
107834468..107834615,107834706..107834872,
107836205..107836316,107838400..107838543,
107847972..107848103,107849865..107850049,
107864169..107864280,107866089..107866145,
107866652..107866822,107871475..107871597,
107872770..107872966,107875027..107875132,
107878196..107878213,107880403..107880508))
/gene="NRCAM"
/gene_synonym="KIAA0343; MGC138845; MGC138846"
/note="isoform D precursor is encoded by transcript
variant 4; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="neuronal cell adhesion molecule isoform D
precursor"
/protein_id="NP_001180511.1"
/db_xref="GI:302191647"
/db_xref="GeneID:4897"
/db_xref="HGNC:7994"
/db_xref="MIM:601581"
/db_xref="HPRD:07207"
CDS complement(join(107790355..107790592,107799908..107799986,
107800806..107800937,107815767..107815802,
107816875..107817051,107818435..107818557,
107820667..107820871,107822266..107822381,
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
107831698..107831727,107832173..107832297,
107834468..107834615,107834706..107834872,
107836205..107836316,107838400..107838543,
107847972..107848103,107849865..107850049,
107864169..107864280,107866652..107866822,
107871475..107871597,107872770..107872966,
107875027..107875132,107878196..107878213,
107880403..107880508))
/gene="NRCAM"
/gene_synonym="KIAA0343; MGC138845; MGC138846"
/note="isoform E precursor is encoded by transcript
variant 5; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="neuronal cell adhesion molecule isoform E
precursor"
/protein_id="NP_001180512.1"
/db_xref="GI:302191649"
/db_xref="CCDS:CCDS55153.1"
/db_xref="GeneID:4897"
/db_xref="HGNC:7994"
/db_xref="HPRD:07207"
/db_xref="MIM:601581"
CDS complement(join(107790355..107790592,107799908..107799986,
107800806..107800937,107816875..107817051,
107818435..107818557,107820667..107820871,
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
107830089..107830190,107831698..107831727,
107832173..107832297,107834468..107834615,
107834706..107834872,107836205..107836316,
107838400..107838543,107847972..107848103,
107849865..107850049,107864169..107864280,
107866652..107866822,107871475..107871597,
107872770..107872966,107875027..107875132,
107878196..107878213,107880403..107880508))
/gene="NRCAM"
/gene_synonym="KIAA0343; MGC138845; MGC138846"
/note="isoform F precursor is encoded by transcript
variant 6; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="neuronal cell adhesion molecule isoform F
precursor"
/protein_id="NP_001180513.1"
/db_xref="GI:302191651"
/db_xref="GeneID:4897"
/db_xref="HGNC:7994"
/db_xref="MIM:601581"
/db_xref="HPRD:07207"
gene complement(108112071..108166638)
/gene="PNPLA8"
/gene_synonym="IPLA2(GAMMA); IPLA2-2; IPLA2G"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:54674"
/db_xref="HGNC:17200"
/db_xref="HPRD:14321"
CDS 110762829..110764955
/gene="LRRN3"
/gene_synonym="FIGLER5; FLJ11129; NLRR-3; NLRR3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="leucine-rich repeat neuronal protein 3
precursor"
/protein_id="NP_001093130.1"
/db_xref="GI:153791507"
/db_xref="CCDS:CCDS5754.1"
/db_xref="GeneID:54674"
/db_xref="HGNC:17200"
CDS 110762829..110764955
/gene="LRRN3"
/gene_synonym="FIGLER5; FLJ11129; NLRR-3; NLRR3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="leucine-rich repeat neuronal protein 3
precursor"
/protein_id="NP_060804.3"
/db_xref="GI:153792227"
/db_xref="CCDS:CCDS5754.1"
/db_xref="GeneID:54674"
/db_xref="HGNC:17200"
CDS 110762829..110764955
/gene="LRRN3"
/gene_synonym="FIGLER5; FLJ11129; NLRR-3; NLRR3"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="leucine-rich repeat neuronal protein 3
precursor"
/protein_id="NP_001093128.1"
/db_xref="GI:153792651"
/db_xref="CCDS:CCDS5754.1"
/db_xref="GeneID:54674"
/db_xref="HGNC:17200"
gene 111051375..111051936
/gene="LOC100420226"
/note="Derived by automated computational analysis using
gene prediction method: Curated Genomic."
/pseudo
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
116395409..116395569,116397491..116397593,
116397692..116397828,116398513..116398674,
116399391..116399544,116403104..116403322,
116409699..116409845,116411552..116411708,
116411903..116412043,116414935..116415165,
116417443..116417523,116418830..116419011,
116422042..116422151,116423358..116423523,
116435709..116435845,116435941..116436178)
/gene="MET"
/gene_synonym="AUTS9; c-Met; HGFR; RCCP2"
/note="isoform a precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="hepatocyte growth factor receptor isoform a
precursor"
/protein_id="NP_001120972.1"
/db_xref="GI:188595716"
/db_xref="CCDS:CCDS47689.1"
/db_xref="GeneID:4233"
/db_xref="HGNC:7029"
/db_xref="MIM:164860"
CDS join(116339139..116340338,116371722..116371913,
116380004..116380138,116380906..116381079,
116395409..116395569,116397491..116397593,
116397692..116397828,116398513..116398674,
116399445..116399544,116403104..116403322,
116409699..116409845,116411552..116411708,
116411903..116412043,116414935..116415165,
116417443..116417523,116418830..116419011,
116422042..116422151,116423358..116423523,
116435709..116435845,116435941..116436178)
/gene="MET"
/gene_synonym="AUTS9; c-Met; HGFR; RCCP2"
/note="isoform b precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="hepatocyte growth factor receptor isoform b
precursor"
/protein_id="NP_000236.2"
/db_xref="GI:42741655"
/db_xref="CCDS:CCDS43636.1"
/db_xref="GeneID:4233"
/db_xref="HGNC:7029"
/db_xref="MIM:164860"
gene 116502563..116559313
/gene="CAPZA2"
/gene_synonym="CAPPA2; CAPZ"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:147870"
/db_xref="HPRD:00999"
CDS complement(join(116918209..116918438,116937666..116937930,
116955125..116955402,116960621..116960847,
116962961..116963043))
/gene="WNT2"
/gene_synonym="INT1L1; IRP"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="protein Wnt-2 precursor"
/protein_id="NP_003382.1"
/db_xref="GI:4507927"
/db_xref="CCDS:CCDS5771.1"
/db_xref="GeneID:7472"
/db_xref="HGNC:12780"
/db_xref="HPRD:00999"
/db_xref="MIM:147870"
gene complement(117003276..117067577)
/gene="ASZ1"
/gene_synonym="ALP1; ANKL1; C7orf7; CT1.19; GASZ;
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
gene prediction method: BestRefseq."
/transcript_id="NM_057168.1"
/db_xref="GI:17402915"
/db_xref="GeneID:51384"
/db_xref="HGNC:16267"
/db_xref="HPRD:05882"
/db_xref="MIM:606267"
CDS join(120969347..120969441,120969621..120969871,
120971732..120972018,120978935..120979399)
/gene="WNT16"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="protein Wnt-16 isoform 1 precursor"
/protein_id="NP_476509.1"
/db_xref="GI:17402916"
/db_xref="CCDS:CCDS5781.1"
/db_xref="GeneID:51384"
/db_xref="HGNC:16267"
/db_xref="MIM:606267"
gene complement(120988905..121036422)
/gene="FAM3C"
/gene_synonym="GS3786; ILEI"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
121000097..121000181,121002951..121003001,
121004184..121004242,121011354..121011477,
121012164..121012193,121018964..121019068,
121023011..121023023))
/gene="FAM3C"
/gene_synonym="GS3786; ILEI"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="family with sequence similarity 3, member C
precursor"
/protein_id="NP_055703.1"
/db_xref="GI:7661714"
/db_xref="CCDS:CCDS5782.1"
/db_xref="GeneID:10447"
/db_xref="HGNC:18664"
/db_xref="HPRD:12270"
/db_xref="MIM:608618"
CDS complement(join(120990515..120990604,120991197..120991323,
121000097..121000181,121002951..121003001,
121004184..121004242,121011354..121011477,
121012164..121012193,121018964..121019068,
121023011..121023023))
/gene="FAM3C"
/gene_synonym="GS3786; ILEI"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="family with sequence similarity 3, member C
precursor"
/protein_id="NP_001035109.1"
/db_xref="GI:91807125"
/db_xref="CCDS:CCDS5782.1"
/db_xref="GeneID:10447"
/db_xref="HGNC:18664"
/db_xref="HPRD:12270"
/db_xref="MIM:608618"
gene 121038508..121038824
/gene="CYCSP19"
/gene_synonym="HCP19"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
121674336..121674432,121676654..121676736,
121678809..121678943,121679508..121679642,
121680870..121681033,121682662..121682797,
121684476..121684622,121691482..121691575,
121691920..121691993,121693964..121694092,
121694995..121695141,121698854..121698996,
121699807..121699942,121701134..121701274)
/gene="PTPRZ1"
/gene_synonym="HPTPZ; HPTPzeta; phosphacan; PTP-ZETA;
PTP18; PTPRZ; PTPZ; RPTPB; RPTPbeta"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="receptor-type tyrosine-protein phosphatase zeta
isoform 1 precursor"
/protein_id="NP_002842.2"
/db_xref="GI:91208428"
/db_xref="CCDS:CCDS34740.1"
/db_xref="GeneID:5803"
/db_xref="HGNC:9685"
/db_xref="MIM:176891"
CDS join(121513554..121513611,121568210..121568275,
121608005..121608184,121612595..121612746,
121616227..121616322,121616839..121616905,
121623719..121623876,121624021..121624171,
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
121674336..121674432,121676654..121676736,
121678809..121678943,121679508..121679642,
121680870..121681033,121682662..121682797,
121684476..121684622,121691482..121691575,
121691920..121691993,121693964..121694092,
121694995..121695141,121698854..121698996,
121699807..121699942,121701134..121701274)
/gene="PTPRZ1"
/gene_synonym="HPTPZ; HPTPzeta; phosphacan; PTP-ZETA;
PTP18; PTPRZ; PTPZ; RPTPB; RPTPbeta"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="receptor-type tyrosine-protein phosphatase zeta
isoform 2 precursor"
/protein_id="NP_001193767.1"
/db_xref="GI:332205943"
/db_xref="GeneID:5803"
/db_xref="HGNC:9685"
/db_xref="MIM:176891"
CDS join(121513554..121513611,121568210..121568275,
121608005..121608184,121612595..121612746,
121616227..121616322,121616839..121616905,
121623719..121623876,121624021..121624171,
121636436..121636620,121637934..121638060,
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
121676654..121676736,121678809..121678943,
121679508..121679642,121680870..121681033,
121682662..121682797,121684476..121684622,
121691482..121691575,121691920..121691993,
121693964..121694092,121694995..121695141,
121698854..121698996,121699807..121699942,
121701134..121701274)
/gene="PTPRZ1"
/gene_synonym="HPTPZ; HPTPzeta; phosphacan; PTP-ZETA;
PTP18; PTPRZ; PTPZ; RPTPB; RPTPbeta"
/note="isoform 3 precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="receptor-type tyrosine-protein phosphatase zeta
isoform 3 precursor"
/protein_id="NP_001193768.1"
/db_xref="GI:332205945"
/db_xref="GeneID:5803"
/db_xref="HGNC:9685"
/db_xref="MIM:176891"
gene complement(121713598..121784344)
/gene="AASS"
/gene_synonym="LKR/SDH; LKRSDH; LORSDH"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
121756687..121756814,121756933..121757011,
121758361..121758507,121758617..121758684,
121766429..121766513,121769415..121769591,
121773571..121773780))
/gene="AASS"
/gene_synonym="LKR/SDH; LKRSDH; LORSDH"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="alpha-aminoadipic semialdehyde synthase,
mitochondrial precursor"
/protein_id="NP_005754.2"
/db_xref="GI:13027640"
/db_xref="CCDS:CCDS5783.1"
/db_xref="GeneID:10157"
/db_xref="HGNC:17366"
/db_xref="HPRD:05489"
/db_xref="MIM:605113"
gene 121799333..121802835
/gene="LOC100130618"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GI:37675276"
/db_xref="GeneID:378925"
/db_xref="HGNC:22411"
/db_xref="HPRD:11512"
CDS complement(122341887..122342804)
/gene="RNF148"
/gene_synonym="MGC35222"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="RING finger protein 148 precursor"
/protein_id="NP_932351.1"
/db_xref="GI:37675277"
/db_xref="CCDS:CCDS47692.1"
/db_xref="GeneID:378925"
/db_xref="HGNC:22411"
/db_xref="HPRD:11512"
gene 122489824..122490414
/gene="LOC100422456"
/note="Derived by automated computational analysis using
gene prediction method: Curated Genomic."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:03992"
/db_xref="MIM:602583"
CDS complement(join(124386579..124387397,
124404008..124405030))
/gene="GPR37"
/gene_synonym="EDNRBL; hET(B)R-LP; PAELR"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="probable G-protein coupled receptor 37
precursor"
/protein_id="NP_005293.1"
/db_xref="GI:4885323"
/db_xref="CCDS:CCDS5792.1"
/db_xref="GeneID:2861"
/db_xref="HGNC:4494"
/db_xref="HPRD:03992"
/db_xref="MIM:602583"
gene complement(124417346..124430864)
/gene="LOC154872"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:601116"
/db_xref="HPRD:03071"
CDS complement(join(126079173..126079222,126086180..126086426,
126173006..126173941,126249416..126249552,
126409919..126410119,126542596..126542733,
126544026..126544180,126544602..126544737,
126746550..126746766,126882749..126883258))
/gene="GRM8"
/gene_synonym="FLJ41058; GLUR8; GPRC1H; MGC126724; mGlu8;
MGLUR8"
/note="isoform a precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="metabotropic glutamate receptor 8 isoform a
precursor"
/protein_id="NP_000836.2"
/db_xref="GI:187960067"
/db_xref="CCDS:CCDS5794.1"
/db_xref="GeneID:2918"
/db_xref="HGNC:4600"
/db_xref="HPRD:03071"
/db_xref="MIM:601116"
CDS complement(join(126086130..126086426,126173006..126173941,
126249416..126249552,126409919..126410119,
126542596..126542733,126544026..126544180,
126544602..126544737,126746550..126746766,
126882749..126883258))
/gene="GRM8"
/gene_synonym="FLJ41058; GLUR8; GPRC1H; MGC126724; mGlu8;
MGLUR8"
/note="isoform b precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="metabotropic glutamate receptor 8 isoform b
precursor"
/protein_id="NP_001120795.1"
/db_xref="GI:187960069"
/db_xref="CCDS:CCDS47696.1"
/db_xref="GeneID:2918"
/db_xref="HGNC:4600"
/db_xref="HPRD:03071"
/db_xref="MIM:601116"
gene 126151192..126152850
/gene="LOC100422325"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:15586"
/db_xref="HPRD:10060"
/db_xref="MIM:610486"
CDS complement(127668732..127670693)
/gene="LRRC4"
/gene_synonym="MGC133342; MGC133343; NAG14; NGL-2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="leucine-rich repeat-containing protein 4
precursor"
/protein_id="NP_071426.1"
/db_xref="GI:15029530"
/db_xref="CCDS:CCDS5799.1"
/db_xref="GeneID:64101"
/db_xref="HGNC:15586"
/db_xref="HPRD:10060"
/db_xref="MIM:610486"
gene 127721913..127722012
/gene="MIR593"
/gene_synonym="hsa-mir-593; MIRN593"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:3952"
/db_xref="HGNC:6553"
/db_xref="HPRD:01249"
/db_xref="MIM:164160"
CDS join(127892072..127892215,127894457..127894816)
/gene="LEP"
/gene_synonym="FLJ94114; OB; OBS"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="leptin precursor"
/protein_id="NP_000221.1"
/db_xref="GI:4557715"
/db_xref="CCDS:CCDS5800.1"
/db_xref="GeneID:3952"
/db_xref="HGNC:6553"
/db_xref="HPRD:01249"
/db_xref="MIM:164160"
gene complement(127944170..127948588)
/gene="MGC27345"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:813"
/db_xref="HGNC:1458"
/db_xref="MIM:603420"
/db_xref="HPRD:04569"
CDS join(128388409..128388421,128388627..128388858,
128394316..128394509,128398925..128399091,
128399846..128399906,128407510..128407709,
128409117..128409221)
/gene="CALU"
/gene_synonym="FLJ90608"
/note="isoform c precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="calumenin isoform c precursor"
/protein_id="NP_001186600.1"
/db_xref="GI:314122177"
/db_xref="GeneID:813"
/db_xref="HGNC:1458"
/db_xref="MIM:603420"
/db_xref="HPRD:04569"
CDS join(128388409..128388421,128388627..128388858,
128394583..128394776,128398925..128399091,
128399846..128399906,128407510..128407709,
128409117..128409221)
/gene="CALU"
/gene_synonym="FLJ90608"
/note="isoform d precursor is encoded by transcript
variant 4; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="calumenin isoform d precursor"
/protein_id="NP_001186601.1"
/db_xref="GI:314122179"
/db_xref="GeneID:813"
/db_xref="HGNC:1458"
/db_xref="MIM:603420"
/db_xref="HPRD:04569"
CDS join(128388638..128388858,128394316..128394509,
128398925..128399091,128399846..128399906,
128407510..128407709,128409117..128409221)
/gene="CALU"
/gene_synonym="FLJ90608"
/note="isoform a precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="calumenin isoform a precursor"
/protein_id="NP_001210.1"
/db_xref="GI:4502551"
/db_xref="CCDS:CCDS5805.1"
/db_xref="GeneID:813"
/db_xref="HGNC:1458"
/db_xref="HPRD:04569"
/db_xref="MIM:603420"
CDS join(128388638..128388858,128394583..128394776,
128398925..128399091,128399846..128399906,
128407510..128407709,128409117..128409221)
/gene="CALU"
/gene_synonym="FLJ90608"
/note="isoform b precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="calumenin isoform b precursor"
/protein_id="NP_001124146.1"
/db_xref="GI:194578885"
/db_xref="CCDS:CCDS47703.1"
/db_xref="GeneID:813"
/db_xref="HGNC:1458"
/db_xref="HPRD:04569"
/db_xref="MIM:603420"
CDS join(128388638..128388858,128394316..128394509,
128398925..128399091,128399846..128399906,
128409117..128409148)
/gene="CALU"
/gene_synonym="FLJ90608"
/note="isoform e precursor is encoded by transcript
variant 5; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="calumenin isoform e precursor"
/protein_id="NP_001186602.1"
/db_xref="GI:314122181"
/db_xref="GeneID:813"
/db_xref="HGNC:1458"
/db_xref="MIM:603420"
/db_xref="HPRD:04569"
CDS join(128398963..128399091,128399846..128399906,
128407510..128407709,128409117..128409221)
/gene="CALU"
/gene_synonym="FLJ90608"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
128845044..128845253,128845451..128845623,
128845991..128846210,128846305..128846428,
128848600..128848692,128849130..128849238,
128850204..128850389,128850806..128850954,
128851477..128851611,128851865..128852292)
/gene="SMO"
/gene_synonym="FZD11; Gx; SMOH"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="smoothened homolog precursor"
/protein_id="NP_005622.1"
/db_xref="GI:5032099"
/db_xref="CCDS:CCDS5811.1"
/db_xref="GeneID:6608"
/db_xref="HGNC:11119"
/db_xref="HPRD:03294"
/db_xref="MIM:601500"
gene 128864855..129070052
/gene="AHCYL2"
/gene_synonym="ADOHCYASE3; FLJ21719; KIAA0828"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
CDS join(129906722..129906792,129908769..129908850,
129909509..129909643,129910533..129910628,
129912916..129913017,129914989..129915087,
129916468..129916578,129917666..129917756,
129919303..129919502,129921944..129922028,
129929400..129929587)
/gene="CPA2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="carboxypeptidase A2 precursor"
/protein_id="NP_001860.2"
/db_xref="GI:217416390"
/db_xref="CCDS:CCDS5817.2"
/db_xref="GeneID:1358"
/db_xref="HGNC:2297"
/db_xref="HPRD:02821"
/db_xref="MIM:600688"
gene 129932974..129964020
/gene="CPA4"
/gene_synonym="CPA3"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
CDS join(130020362..130020426,130020939..130021020,
130021471..130021704,130021949..130022050,
130023232..130023333,130023525..130023635,
130024377..130024467,130024987..130025186,
130025680..130025764,130027665..130027852)
/gene="CPA1"
/gene_synonym="CPA"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="carboxypeptidase A1 precursor"
/protein_id="NP_001859.1"
/db_xref="GI:4502997"
/db_xref="CCDS:CCDS5820.1"
/db_xref="GeneID:1357"
/db_xref="HGNC:2296"
/db_xref="HPRD:00269"
/db_xref="MIM:114850"
gene complement(130036375..130080854)
/gene="TSGA14"
/gene_synonym="Cep41; DKFZp762H1311"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:9171"
/db_xref="HPRD:04025"
/db_xref="MIM:602632"
CDS complement(join(131189070..131189267,131190627..131190794,
131191019..131191080,131191338..131191485,
131193710..131193787,131194124..131194344,
131194995..131195090,131195587..131196192,
131241019..131241118))
/gene="PODXL"
/gene_synonym="Gp200; MGC138240; PC; PCLP; PCLP-1"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="podocalyxin isoform 1 precursor"
/protein_id="NP_001018121.1"
/db_xref="GI:66277202"
/db_xref="CCDS:CCDS34755.1"
/db_xref="GeneID:5420"
/db_xref="HGNC:9171"
/db_xref="MIM:602632"
CDS complement(join(131189070..131189267,131190627..131190794,
131191019..131191080,131191338..131191485,
131193710..131193787,131194124..131194344,
131195587..131196192,131241019..131241118))
/gene="PODXL"
/gene_synonym="Gp200; MGC138240; PC; PCLP; PCLP-1"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="podocalyxin isoform 2 precursor"
/protein_id="NP_005388.2"
/db_xref="GI:33598950"
/db_xref="CCDS:CCDS47714.1"
/db_xref="GeneID:5420"
/db_xref="HGNC:9171"
/db_xref="MIM:602632"
gene 131204873..131205305
/gene="RPL31P36"
/gene_synonym="RPL31_19_846"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
CDS complement(join(132470398..132470421,132481203..132481338,
132523159..132523229,132570422..132570505,
132659929..132660046,132709306..132709387,
132754902..132754989,132766617..132766697))
/gene="CHCHD3"
/gene_synonym="FLJ20420"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="coiled-coil-helix-coiled-coil-helix
domain-containing protein 3, mitochondrial precursor"
/protein_id="NP_060282.1"
/db_xref="GI:8923390"
/db_xref="CCDS:CCDS5828.1"
/db_xref="GeneID:54927"
/db_xref="HGNC:21906"
/db_xref="HPRD:13044"
/db_xref="MIM:613748"
gene complement(132719275..132720700)
/gene="LOC729998"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:389558"
/db_xref="HGNC:33773"
/db_xref="HPRD:15613"
CDS complement(join(135418723..135419067,135421847..135421947,
135433253..135433328))
/gene="FAM180A"
/gene_synonym="UNQ1940"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="hypothetical protein LOC389558 precursor"
/protein_id="NP_995327.1"
/db_xref="GI:45504351"
/db_xref="CCDS:CCDS5841.1"
/db_xref="GeneID:389558"
/db_xref="HGNC:33773"
/db_xref="HPRD:15613"
gene 135611203..135617629
/gene="LOC100506957"
/note="Derived by automated computational analysis using
gene prediction method: GNOMON. Supporting evidence
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:11953"
/db_xref="MIM:603838"
CDS join(140396545..140396642,140402666..140402810,
140404660..140404734)
/gene="NDUFB2"
/gene_synonym="AGGG; CI-AGGG; MGC70788"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="NADH dehydrogenase [ubiquinone] 1 beta
subcomplex subunit 2, mitochondrial precursor"
/protein_id="NP_004537.1"
/db_xref="GI:4758778"
/db_xref="CCDS:CCDS5862.1"
/db_xref="GeneID:4708"
/db_xref="HGNC:7697"
/db_xref="HPRD:11953"
/db_xref="MIM:603838"
gene complement(140433812..140624564)
/gene="BRAF"
/gene_synonym="B-RAF1; BRAF1; FLJ95109; MGC126806;
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
141315271..141315365,141321532..141321601,
141333701..141333780,141336760..141336817,
141341048..141341198,141341611..141341708,
141349063..141349133,141351325..141351409,
141352587..141352724)
/gene="AGK"
/gene_synonym="FLJ10842; MULK"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="acylglycerol kinase, mitochondrial precursor"
/protein_id="NP_060708.1"
/db_xref="GI:8922701"
/db_xref="CCDS:CCDS5865.1"
/db_xref="GeneID:55750"
/db_xref="HGNC:21869"
/db_xref="HPRD:08554"
/db_xref="MIM:610345"
gene complement(141356528..141401953)
/gene="KIAA1147"
/gene_synonym="LCHN; PRO2561"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:600439"
CDS join(141438967..141438990,141441969..141442029,
141443361..141443501,141443702..141443789,
141445296..141445384,141450111..141450154)
/gene="SSBP1"
/gene_synonym="Mt-SSB; mtSSB; SOSS-B1; SSBP"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="single-stranded DNA-binding protein,
mitochondrial precursor"
/protein_id="NP_003134.1"
/db_xref="GI:4507231"
/db_xref="CCDS:CCDS5866.1"
/db_xref="GeneID:6742"
/db_xref="HGNC:11317"
/db_xref="HPRD:02703"
/db_xref="MIM:600439"
gene 141463897..141464997
/gene="TAS2R3"
/gene_synonym="T2R3"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/transcript_id="NM_001171951.1"
/db_xref="GI:285394226"
/db_xref="GeneID:136242"
/db_xref="HGNC:29211"
/db_xref="HPRD:17297"
CDS complement(join(141536195..141536335,141536912..141537048,
141537660..141537913,141539138..141539279,
141540816..141540849))
/gene="PRSS37"
/gene_synonym="TRYX2"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="probable inactive serine protease 37 isoform 1
precursor"
/protein_id="NP_001008271.2"
/db_xref="GI:285394164"
/db_xref="CCDS:CCDS34764.1"
/db_xref="GeneID:136242"
/db_xref="HGNC:29211"
/db_xref="HPRD:17297"
CDS complement(join(141536195..141536335,141536912..141537048,
141537663..141537913,141539138..141539279,
141540816..141540849))
/gene="PRSS37"
/gene_synonym="TRYX2"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="probable inactive serine protease 37 isoform 2
precursor"
/protein_id="NP_001165422.1"
/db_xref="GI:285394227"
/db_xref="GeneID:136242"
/db_xref="HGNC:29211"
/db_xref="HPRD:17297"
gene 141562659..141563618
/gene="OR9A3P"
/gene_synonym="OR9A6P"
/note="Derived by automated computational analysis using
gene prediction method: Curated Genomic."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
141954875..141955131,141955355..141955493,
141957488..141957527))
/gene="PRSS58"
/gene_synonym="FLJ16649; MGC35022; PRSS1; TRY1; TRYX3;
UNQ2540"
/EC_number="3.4.21.4"
/note="trypsin-X3; trypsin X3; serine protease 58; Derived
by automated computational analysis using gene prediction
method: Curated Genomic."
/codon_start=1
/product="serine protease 58 precursor"
/protein_id="NP_001001317.1"
/db_xref="GI:48255915"
/db_xref="CCDS:CCDS5871.1"
/db_xref="GeneID:136541"
/db_xref="HGNC:39125"
gene complement(141965647..141971117)
/gene="TRY2P"
/note="Derived by automated computational analysis using
gene prediction method: Curated Genomic."
/pseudo
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
142564661..142564823,142565363..142565477,
142565752..142565804,142565996..142566115,
142566247..142566494,142566727..142566900,
142567570..142567719,142567967..142568160,
142568283..142568438,142568549..142568657)
/gene="EPHB6"
/gene_synonym="HEP; MGC129910; MGC129911"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="ephrin type-B receptor 6 precursor"
/protein_id="NP_004436.2"
/db_xref="GI:194097332"
/db_xref="CCDS:CCDS5873.2"
/db_xref="GeneID:2051"
/db_xref="HGNC:3396"
/db_xref="HPRD:04133"
/db_xref="MIM:602757"
gene complement(142568960..142583477)
/gene="TRPV6"
/gene_synonym="ABP/ZF; CAT1; CATL; ECAC2; HSA277909;
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HGNC:8993"
/db_xref="HPRD:07179"
/db_xref="MIM:176720"
CDS join(142829210..142829304,142832287..142832392,
142836168..142836282,142836611..142836735)
/gene="PIP"
/gene_synonym="GCDFP-15; GCDFP15; GPIP4"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="prolactin-inducible protein precursor"
/protein_id="NP_002643.1"
/db_xref="GI:4505821"
/db_xref="CCDS:CCDS34768.1"
/db_xref="GeneID:5304"
/db_xref="HGNC:8993"
/db_xref="HPRD:07179"
/db_xref="MIM:176720"
gene 142880512..142881528
/gene="TAS2R39"
/gene_synonym="T2R39; T2R57"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/product="transmembrane protein 139, transcript variant 7"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/transcript_id="NR_040003.1"
/db_xref="GI:338221719"
/db_xref="GeneID:135932"
/db_xref="HGNC:22058"
CDS join(142983051..142983295,142983517..142983922)
/gene="TMEM139"
/gene_synonym="FLJ90586"
/note="isoform a precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="transmembrane protein 139 isoform a precursor"
/protein_id="NP_699176.1"
/db_xref="GI:23503271"
/db_xref="CCDS:CCDS5878.1"
/db_xref="GeneID:135932"
/db_xref="HGNC:22058"
CDS join(142983051..142983295,142983517..142983922)
/gene="TMEM139"
/gene_synonym="FLJ90586"
/note="isoform a precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="transmembrane protein 139 isoform a precursor"
/protein_id="NP_001229702.1"
/db_xref="GI:338221712"
/db_xref="GeneID:135932"
/db_xref="HGNC:22058"
CDS join(142983051..142983295,142983517..142983922)
/gene="TMEM139"
/gene_synonym="FLJ90586"
/note="isoform a precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="transmembrane protein 139 isoform a precursor"
/protein_id="NP_001229703.1"
/db_xref="GI:338221714"
/db_xref="GeneID:135932"
/db_xref="HGNC:22058"
CDS join(142983051..142983295,142983517..142983922)
/gene="TMEM139"
/gene_synonym="FLJ90586"
/note="isoform a precursor is encoded by transcript
variant 4; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="transmembrane protein 139 isoform a precursor"
/protein_id="NP_001229704.1"
/db_xref="GI:338221716"
/db_xref="GeneID:135932"
/db_xref="HGNC:22058"
CDS 142983701..142983922
/gene="TMEM139"
/gene_synonym="FLJ90586"
/note="isoform b is encoded by transcript variant 5;
Derived by automated computational analysis using gene
prediction method: BestRefseq."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
143094397..143094455,143094654..143094750,
143095013..143095163,143095414..143095541,
143095694..143096038,143096351..143096506,
143096744..143097146,143098417..143098698,
143104704..143104771,143105817..143105898))
/gene="EPHA1"
/gene_synonym="EPH; EPHT; EPHT1; MGC163163"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="ephrin type-A receptor 1 precursor"
/protein_id="NP_005223.4"
/db_xref="GI:221316650"
/db_xref="CCDS:CCDS5884.1"
/db_xref="GeneID:2041"
/db_xref="HGNC:3385"
/db_xref="HPRD:01554"
/db_xref="MIM:179610"
gene 143104906..143220542
/gene="LOC285965"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
147844583..147844801,147869334..147869570,
147914380..147914616,147926738..147926871,
147964125..147964218,148080741..148080980,
148106483..148106563,148112509..148112708)
/gene="CNTNAP2"
/gene_synonym="AUTS15; CASPR2; CDFE; DKFZp781D1846; NRXN4;
PTHSL1"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="contactin-associated protein-like 2 precursor"
/protein_id="NP_054860.1"
/db_xref="GI:7662350"
/db_xref="CCDS:CCDS5889.1"
/db_xref="GeneID:26047"
/db_xref="HGNC:13830"
/db_xref="HPRD:05197"
/db_xref="MIM:604569"
gene 146289110..146289752
/gene="LOC100420074"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
CDS complement(join(148700886..148701301,148702233..148702466,
148702989..148703145,148705251..148705402,
148708938..148709096,148709247..148709452,
148711996..148712134,148716084..148716289,
148718059..148718239,148725413..148725500))
/gene="PDIA4"
/gene_synonym="ERp-72; ERP70; ERP72"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="protein disulfide-isomerase A4 precursor"
/protein_id="NP_004902.1"
/db_xref="GI:4758304"
/db_xref="CCDS:CCDS5893.1"
/db_xref="GeneID:9601"
/db_xref="HGNC:30167"
/db_xref="HPRD:06501"
gene 148750959..148751399
/gene="COX6B1P1"
/gene_synonym="COX6BP-1; COX6BP1"
/note="Derived by automated computational analysis using
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
149524002..149524048,149524860..149525074,
149525727..149525822,149526025..149526085,
149528224..149528354,149529857..149530012,
149530901..149530918)
/gene="SSPO"
/gene_synonym="FLJ36112; FLJ45737; KIAA2036; SCO-spondin"
/exception="unclassified translation discrepancy"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="SCO-spondin precursor"
/protein_id="NP_940857.2"
/db_xref="GI:134031945"
/db_xref="GeneID:23145"
/db_xref="HGNC:21998"
gene 149535509..149564568
/gene="ZNF862"
/gene_synonym="FLJ30362; KIAA0543"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/db_xref="GeneID:643641"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="GeneID:653857"
/db_xref="HGNC:37282"
CDS complement(join(149946075..149946143,149981842..149981934,
149983456..149983629,149986539..149986682,
149990401..149990508,149992341..149992385))
/gene="ACTR3C"
/gene_synonym="ARP11"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="actin-related protein 3C precursor"
/protein_id="NP_001157930.1"
/db_xref="GI:256574835"
/db_xref="CCDS:CCDS47744.1"
/db_xref="GeneID:653857"
/db_xref="HGNC:37282"
CDS complement(join(149946075..149946143,149981842..149981934,
149983456..149983629,149986539..149986682,
149990401..149990508,149992341..149992385))
/gene="ACTR3C"
/gene_synonym="ARP11"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="actin-related protein 3C precursor"
/protein_id="NP_001157931.1"
/db_xref="GI:256574837"
/db_xref="CCDS:CCDS47744.1"
/db_xref="GeneID:653857"
/db_xref="HGNC:37282"
gene 150020296..150035245
/gene="LRRC61"
/gene_synonym="FLJ22216; FLJ31392; HSPC295; MGC3036"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:03577"
/db_xref="MIM:601973"
CDS complement(join(150035714..150035830,150036075..150036170,
150037189..150037293,150037525..150037698))
/gene="RARRES2"
/gene_synonym="HP10433; TIG2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="retinoic acid receptor responder protein 2
precursor"
/protein_id="NP_002880.1"
/db_xref="GI:4506427"
/db_xref="CCDS:CCDS5902.1"
/db_xref="GeneID:5919"
/db_xref="HGNC:9868"
/db_xref="HPRD:03577"
/db_xref="MIM:601973"
gene 150065879..150071133
/gene="REPIN1"
/gene_synonym="AP4; RIP60; Zfp464; ZNF464"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="HPRD:00088"
/db_xref="MIM:104610"
CDS join(150553559..150555128,150555851..150556136,
150557589..150557721,150558031..150558297)
/gene="ABP1"
/gene_synonym="ABP; AOC1; DAO; DAO1; KAO"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="amiloride-sensitive amine oxidase
[copper-containing] precursor"
/protein_id="NP_001082.2"
/db_xref="GI:73486661"
/db_xref="CCDS:CCDS43679.1"
/db_xref="GeneID:26"
/db_xref="HGNC:80"
/db_xref="HPRD:00088"
/db_xref="MIM:104610"
gene complement(150642044..150675402)
/gene="KCNH2"
/gene_synonym="ERG1; HERG; HERG1; Kv11.1; LQT2; SQT1"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
/db_xref="MIM:601293"
CDS complement(join(151164205..151164297,151167657..151167738,
151168480..151168527,151168635..151168691,
151174419..151174501,151181823..151181890,
151188029..151188100,151216546..151216597))
/gene="RHEB"
/gene_synonym="MGC111559; RHEB2"
/note="Derived by automated computational analysis using
gene prediction method: BestRefseq."
/codon_start=1
/product="GTP-binding protein Rheb precursor"
/protein_id="NP_005605.1"
/db_xref="GI:5032041"
/db_xref="CCDS:CCDS5927.1"
/db_xref="GeneID:6009"
/db_xref="HGNC:10011"
/db_xref="HPRD:03188"
/db_xref="MIM:601293"
gene 151198918..151201398
/gene="ETF1P2"
/gene_synonym="SUP45L3"
t/data/NC_000007-ribosomal-slippage.gb view on Meta::CPAN
157414054..157414201,157449049..157449243,
157475417..157475629,157691365..157691429,
157873990..157874069,157903521..157903607,
157926369..157926751,157929347..157929387,
157930986..157931207,157959623..157959983,
157985019..157985187,157997863..157997965,
158109511..158109624,158282427..158282477,
158380250..158380361))
/gene="PTPRN2"
/gene_synonym="IA-2beta; IAR; ICAAR; PTPRP; R-PTP-N2"
/note="isoform 1 precursor is encoded by transcript
variant 1; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="receptor-type tyrosine-protein phosphatase N2
isoform 1 precursor"
/protein_id="NP_002838.2"
/db_xref="GI:194097440"
/db_xref="CCDS:CCDS5947.1"
/db_xref="GeneID:5799"
/db_xref="HGNC:9677"
/db_xref="MIM:601698"
CDS complement(join(157333408..157333479,157341640..157341713,
157361594..157361658,157364132..157364185,
157369305..157369471,157370713..157370832,
157387930..157388007,157396694..157396767,
157414054..157414201,157449049..157449243,
157475417..157475629,157691365..157691429,
157873990..157874069,157903521..157903607,
157926369..157926751,157929347..157929387,
157930986..157931207,157959623..157959983,
157985019..157985187,157997863..157997965,
158109511..158109624,158380250..158380361))
/gene="PTPRN2"
/gene_synonym="IA-2beta; IAR; ICAAR; PTPRP; R-PTP-N2"
/note="isoform 2 precursor is encoded by transcript
variant 2; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="receptor-type tyrosine-protein phosphatase N2
isoform 2 precursor"
/protein_id="NP_570857.2"
/db_xref="GI:194097438"
/db_xref="CCDS:CCDS5948.1"
/db_xref="GeneID:5799"
/db_xref="HGNC:9677"
/db_xref="MIM:601698"
CDS complement(join(157333408..157333479,157341640..157341713,
157361594..157361658,157364132..157364185,
157369305..157369471,157370713..157370832,
157387930..157388007,157396694..157396767,
157414054..157414201,157449049..157449243,
157475417..157475629,157691365..157691429,
157873990..157874069,157926369..157926751,
157929347..157929387,157930986..157931207,
157959623..157959983,157985019..157985187,
157997863..157997965,158109511..158109624,
158282427..158282477,158380250..158380361))
/gene="PTPRN2"
/gene_synonym="IA-2beta; IAR; ICAAR; PTPRP; R-PTP-N2"
/note="isoform 3 precursor is encoded by transcript
variant 3; Derived by automated computational analysis
using gene prediction method: BestRefseq."
/codon_start=1
/product="receptor-type tyrosine-protein phosphatase N2
isoform 3 precursor"
/protein_id="NP_570858.2"
/db_xref="GI:194097442"
/db_xref="CCDS:CCDS5949.1"
/db_xref="GeneID:5799"
/db_xref="HGNC:9677"
/db_xref="MIM:601698"
gene complement(157367028..157367114)
/gene="MIR153-2"
/gene_synonym="MIRN153-2"
/note="Derived by automated computational analysis using
t/data/entrezgene.dat view on Meta::CPAN
strand minus ,
id
gi 51511728 } } } ,
seqs {
whole
gi 6226959 } ,
products {
{
type peptide ,
heading "Reference" ,
label "precursor" ,
accession "NP_000005" ,
version 1 ,
genomic-coords {
packed-int {
{
from 9111685 ,
to 9111701 ,
strand minus ,
id
gi 51511728 } ,
t/data/entrezgene.dat view on Meta::CPAN
strand minus ,
id
gi 37543832 } } } ,
seqs {
whole
gi 6226959 } ,
products {
{
type peptide ,
heading "Reference" ,
label "precursor" ,
accession "NP_000005" ,
version 1 ,
genomic-coords {
packed-int {
{
from 1979392 ,
to 1979408 ,
strand minus ,
id
gi 37543832 } ,
t/data/entrezgene.dat view on Meta::CPAN
strand minus ,
id
gi 51471135 } } } ,
seqs {
whole
gi 6226959 } ,
products {
{
type peptide ,
heading "Reference" ,
label "precursor" ,
accession "NP_000005" ,
version 1 ,
genomic-coords {
packed-int {
{
from 4173280 ,
to 4173296 ,
strand minus ,
id
gi 51471135 } ,
t/data/entrezgene.dat view on Meta::CPAN
heading "Product" ,
accession "NP_000005" ,
version 1 ,
source {
{
src {
db "Protein" ,
tag
id 4557225 } ,
anchor "NP_000005" ,
post-text "alpha-2-macroglobulin precursor" } } ,
seqs {
whole
gi 4557225 } ,
comment {
{
type other ,
heading "Conserved Domains" ,
version 0 ,
source {
{
t/data/entrezgene.dat view on Meta::CPAN
refs {
pmid 14506912 } ,
create-date
str "Oct 7 2003 12:00AM" ,
update-date
str "Jul 7 2004 1:36PM" } ,
{
type generif ,
text "There is a significant genetic association of the 5 bp deletion
and two novel polymorphisms in alpha-2-macroglobulin alpha-2-macroglobulin
precursor with AD" ,
version 0 ,
refs {
pmid 12966032 } ,
create-date
str "Jun 27 2004 5:41PM" ,
update-date
str "Jun 27 2004 6:18PM" } ,
{
type generif ,
text "Alpha2-macroglobulin is a substrate and an endogenous inhibitor
t/data/entrezgene.dat view on Meta::CPAN
str "Mar 4 2002 7:46AM" } ,
{
type generif ,
heading "HIV-1 protein interactions" ,
version 0 ,
comment {
{
type generif ,
text "Binding of HIV-1 Tat to LRP inhibits neuronal binding, uptake
and degradation of physiological ligands for LRP, including
alpha2-macroglobulin, apolipoprotein E4, amyloid precursor and amyloid
beta-protein" ,
version 0 ,
refs {
pmid 11100124 } ,
comment {
{
type comment ,
label "Tat" ,
accession "NP_057853" ,
version 1 ,
t/data/entrezgene.dat view on Meta::CPAN
strand plus ,
id
gi 51511730 } } } ,
seqs {
whole
gi 9665246 } ,
products {
{
type peptide ,
heading "Reference" ,
label "precursor" ,
accession "NP_001076" ,
version 1 ,
genomic-coords {
packed-int {
{
from 94150531 ,
to 94151173 ,
strand plus ,
id
gi 51511730 } ,
t/data/entrezgene.dat view on Meta::CPAN
strand plus ,
id
gi 51493278 } } } ,
seqs {
whole
gi 9665246 } ,
products {
{
type peptide ,
heading "Reference" ,
label "precursor" ,
accession "NP_001076" ,
version 1 ,
genomic-coords {
packed-int {
{
from 76080531 ,
to 76081173 ,
strand plus ,
id
gi 51493278 } ,
t/data/entrezgene.dat view on Meta::CPAN
strand plus ,
id
gi 51472322 } } } ,
seqs {
whole
gi 9665246 } ,
products {
{
type peptide ,
heading "Reference" ,
label "precursor" ,
accession "NP_001076" ,
version 1 ,
genomic-coords {
packed-int {
{
from 23153531 ,
to 23154173 ,
strand plus ,
id
gi 51472322 } ,
t/data/entrezgene.dat view on Meta::CPAN
accession "NP_001076" ,
version 2 ,
source {
{
src {
db "Protein" ,
tag
id 50659080 } ,
anchor "NP_001076" ,
post-text "serine (or cysteine) proteinase inhibitor, clade
A, member 3 precursor" } } ,
seqs {
whole
gi 50659080 } ,
comment {
{
type other ,
heading "Conserved Domains" ,
version 0 ,
source {
{
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
version 2,
source {
{
src {
db "CCDS",
tag str "CCDS14771.4"
},
anchor "CCDS14771.4"
}
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
version 2,
source {
{
src {
db "CCDS",
tag str "CCDS14771.4"
},
anchor "CCDS14771.4"
}
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
version 2,
source {
{
src {
db "CCDS",
tag str "CCDS14771.4"
},
anchor "CCDS14771.4"
}
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
version 2,
genomic-coords {
mix {
int {
from 155139041,
to 155139068,
strand plus,
id gi 528476524
},
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
},
seqs {
whole gi 29171681
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_002177",
version 2,
genomic-coords {
mix {
int {
from 143710354,
to 143710381,
strand plus,
id gi 157734237
},
t/data/entrezgene_bug3453.dat view on Meta::CPAN
heading "Product",
accession "NP_002177",
version 2,
source {
{
src {
db "Protein",
tag id 29171682
},
anchor "NP_002177",
post-text "interleukin-9 receptor isoform 1 precursor"
}
},
seqs {
whole gi 29171682
},
comment {
{
type other,
heading "Related",
source {
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
},
seqs {
whole gi 14196466
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_061740",
version 1,
source {
{
src {
db "CCDS",
tag str "CCDS58979.1"
},
anchor "CCDS58979.1"
}
t/data/entrezgene_bug3453.dat view on Meta::CPAN
id gi 50284693
}
},
seqs {
whole gi 523567549
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_061740",
version 2,
source {
{
src {
db "CCDS",
tag str "CCDS58979.1"
},
anchor "CCDS58979.1"
}
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
},
seqs {
whole gi 523567548
}
},
{
type peptide,
heading "Reference",
label "isoform 2 precursor",
accession "NP_114442",
version 2,
genomic-coords {
int {
from 65304,
to 67859,
strand plus,
id gi 50284693
}
},
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
},
seqs {
whole gi 14196466
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_061740",
version 1,
genomic-coords {
mix {
int {
from 140167974,
to 140170394,
strand plus,
id gi 528476642
},
t/data/entrezgene_bug3453.dat view on Meta::CPAN
}
}
},
seqs {
whole gi 14196466
},
products {
{
type peptide,
heading "Reference",
label "isoform 1 precursor",
accession "NP_061740",
version 1,
genomic-coords {
mix {
int {
from 135879842,
to 135882262,
strand plus,
id gi 157734151
},
t/data/entrezgene_bug3453.dat view on Meta::CPAN
heading "Product",
accession "NP_061740",
version 2,
source {
{
src {
db "Protein",
tag id 523567548
},
anchor "NP_061740",
post-text "protocadherin gamma-A4 isoform 1 precursor"
}
},
seqs {
whole gi 523567548
},
comment {
{
type other,
heading "Conserved Domains",
source {
t/data/entrezgene_bug3453.dat view on Meta::CPAN
heading "Product",
accession "NP_114442",
version 2,
source {
{
src {
db "Protein",
tag id 523567550
},
anchor "NP_114442",
post-text "protocadherin gamma-A4 isoform 2 precursor"
}
},
seqs {
whole gi 523567550
},
comment {
{
type other,
heading "Conserved Domains",
source {
t/data/hsinsulin.blastcl3.blastn view on Meta::CPAN
Sequences producing significant alignments: (bits) Value
gb|J00265.1|HUMINS01 Human insulin gene, complete cds 355 2e-95
emb|V00565.1|HSINSU Human gene for preproinsulin, from chromosom... 355 2e-95
gb|M10039.1|HUMINSPR Human alpha-type insulin gene and 5' flanki... 355 2e-95
gb|L15440.1|HUMINSTHIG Homo sapiens tyrosine hydroxylase (TH) ge... 355 2e-95
gb|AC132217.15| Homo sapiens chromosome 11, clone RP11-889I17, c... 347 4e-93
gb|AC130303.8| Homo sapiens chromosome 11, clone RP4-539G11, com... 347 4e-93
gb|AY138590.1|AY138589S2 Homo sapiens insulin (INS) gene, exons ... 347 4e-93
emb|AJ009655.1|HSA9655 Homo sapiens ins gene, partial 347 4e-93
gb|AY137497.1|AY137496S2 Pan troglodytes insulin precursor (INS)... 339 9e-91
emb|X61089.1|PTPPINS P.troglodytes gene for preproinsulin 315 1e-83
gb|AY137500.1|AY137498S3 Gorilla gorilla insulin precursor (INS)... 262 2e-67
gb|AY137503.1|AY137501S3 Pongo pygmaeus insulin precursor (INS) ... 222 1e-55
emb|X61092.1|CEPPINS C.aethiops gene for preproinsulin 129 2e-27
>gb|J00265.1|HUMINS01 Human insulin gene, complete cds
Length = 4044
Score = 355 bits (179), Expect = 2e-95
Identities = 179/179 (100%)
Strand = Plus / Plus
t/data/hsinsulin.blastcl3.blastn view on Meta::CPAN
Query: 61 gccccagctctgcagcagggaggacgtggctgggctcgtgaagcatgtgggggtgagccc 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gccccagctgtgcagcagggaggacgtggctgggctcgtgaagcatgtgggggtgagccc 125
Query: 121 aggggccccaaggcagggcacctggccttcagcctgcctcagccctgcctgtctcccag 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aggggccccaaggcagggcacctggccttcagcctgcctcagccctgcctgtctcccag 184
>gb|AY137497.1|AY137496S2 Pan troglodytes insulin precursor (INS) gene, complete cds
Length = 4124
Score = 339 bits (171), Expect = 9e-91
Identities = 177/179 (98%)
Strand = Plus / Plus
Query: 1 gtctgttccaagggcctttgcgtcaggtgggctcagggttccagggtggctggaccccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtctgttccaagggcctttgcgtcaggtgggctcagggttccagggtggctggaccccag 397
t/data/hsinsulin.blastcl3.blastn view on Meta::CPAN
Query: 61 gccccagctctgcagcagggaggacgtggctgggctcgtgaagcatgtgggggtgagccc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1088 gccccagctctgcagcagggaggacgtggctgggctcttgaagcatgtgggggtgagccc 1147
Query: 121 aggggccccaaggcagggcacctggccttcagcctgcctcagccctgcctgtctcccag 179
|||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 1148 aggggccccaaggcagggcagct-gccttcagccggcctcagccctgcctgtctcccag 1205
>gb|AY137500.1|AY137498S3 Gorilla gorilla insulin precursor (INS) gene, complete cds
Length = 4146
Score = 262 bits (132), Expect = 2e-67
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 36 gggttccagggtggctggaccccaggccccagctctgcagcagggaggacgtggctgggc 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gggttccagggtggctggaccccaggccccagctctgcagcagggaggacgtggctgggc 448
t/data/hsinsulin.blastcl3.blastn view on Meta::CPAN
Query: 96 tcgtgaagcatgtgggggtgagcccaggggccccaaggcagggcacctggccttcagcct 155
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 449 tcttgaagcatgtgggggtgagcccaggggccccaaggcagggcaactggccttcagccg 508
Query: 156 gcctcagccctgcctgtctcccag 179
||||||||||||||||||||||||
Sbjct: 509 gcctcagccctgcctgtctcccag 532
>gb|AY137503.1|AY137501S3 Pongo pygmaeus insulin precursor (INS) gene, complete cds
Length = 4126
Score = 222 bits (112), Expect = 1e-55
Identities = 136/144 (94%)
Strand = Plus / Plus
Query: 36 gggttccagggtggctggaccccaggccccagctctgcagcagggaggacgtggctgggc 95
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 384 gggttccagggtggctggaccccaggctccagctctgcagctgggaggacgtggctgggc 443
t/data/interpro.xml view on Meta::CPAN
<taxon_data name="Metazoa" proteins_count="243"/>
<taxon_data name="Plastid Group" proteins_count="4"/>
<taxon_data name="Plastid Group" proteins_count="14"/>
<taxon_data name="Other Eukaryotes" proteins_count="6"/>
<taxon_data name="Other Eukaryotes" proteins_count="4"/>
</taxonomy_distribution>
</interpro>
<interpro id="IPR000010" protein_count="956" short_name="Prot_inh_cystat" type="Domain">
<name>Proteinase inhibitor I25, cystatin</name>
<abstract>
<p>Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a lar...
<p>The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [<cite idref="PUB00003412"/>, <cite idref="PUB00014312"/>, <cite idref="PUB00001614"/>]. They mainly inhibit peptidases belonging to peptidase famil...
<ul>
<li>
The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither...
<li>The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. </li>
<li>The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, <db_xref db="INTERPRO" dbkey="IPR002395"/>) and L- (lo...
<li>Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 ...
</ul>
<p>All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intr...
</abstract>
t/data/interpro_relationship.xml view on Meta::CPAN
<taxon_data name="Metazoa" proteins_count="243"/>
<taxon_data name="Plastid Group" proteins_count="4"/>
<taxon_data name="Plastid Group" proteins_count="14"/>
<taxon_data name="Other Eukaryotes" proteins_count="6"/>
<taxon_data name="Other Eukaryotes" proteins_count="4"/>
</taxonomy_distribution>
</interpro>
<interpro id="IPR000010" protein_count="956" short_name="Prot_inh_cystat" type="Domain">
<name>Proteinase inhibitor I25, cystatin</name>
<abstract>
<p>Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a lar...
<p>The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [<cite idref="PUB00003412"/>, <cite idref="PUB00014312"/>, <cite idref="PUB00001614"/>]. They mainly inhibit peptidases belonging to peptidase famil...
<ul>
<li>
The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither...
<li>The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. </li>
<li>The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, <db_xref db="INTERPRO" dbkey="IPR002395"/>) and L- (lo...
<li>Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 ...
</ul>
<p>All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intr...
</abstract>
t/data/interpro_relationship.xml view on Meta::CPAN
<publication id="PUB00000798">
<author_list>Yamamoto T, Davis CG, Brown MS, Schneider WJ, Casey ML, Goldstein JL, Russell DW.</author_list>
<title>The human LDL receptor: a cysteine-rich protein with multiple Alu sequences in its mRNA.</title>
<db_xref db="PUBMED" dbkey="6091915"/>
<journal>Cell</journal>
<location issue="1" pages="27-38" volume="39"/>
<year>1984</year>
</publication>
<publication id="PUB00003391">
<author_list>Springer TA.</author_list>
<title>An extracellular beta-propeller module predicted in lipoprotein and scavenger receptors, tyrosine kinases, epidermal growth factor precursor, and extracellular matrix components.</title>
<db_xref db="PUBMED" dbkey="9790844"/>
<journal>J. Mol. Biol.</journal>
<location issue="4" pages="837-62" volume="283"/>
<year>1998</year>
</publication>
<publication id="PUB00004868">
<author_list>Daly NL, Scanlon MJ, Djordjevic JT, Kroon PA, Smith R.</author_list>
<title>Three-dimensional structure of a cysteine-rich repeat from the low-density lipoprotein receptor.</title>
<db_xref db="PUBMED" dbkey="7603991"/>
<journal>Proc. Natl. Acad. Sci. U.S.A.</journal>
t/data/interpro_relationship.xml view on Meta::CPAN
<p>In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold:</p>
<ul>
<li>Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and...
<li>Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine pepti...
</ul>
<p>In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. </p>
<p>Aspartic endopeptidases <db_xref db="EC" dbkey="3.4.23."/> of vertebrate, fungal and retroviral origin have been characterised [<cite idref="PUB00006548"/>]. More recently, aspartic endopeptidases associated with the processing of bacterial type ...
<p>Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a g...
All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure.</p>
<p>This group of aspartic endopeptidases belong to MEROPS peptidase family A24 (type IV prepilin peptidase family, clan AD), subfamily A24A.</p>
<p>Bacteria produce a number of protein precursors that undergo post-translational methylation and proteolysis prior to secretion as active
proteins. Type IV prepilin leader peptidases are enzymes that mediate this type of post-translational modification. Type IV pilin is a protein found on the surface of <taxon tax_id="287">Pseudomonas aeruginosa</taxon>, <taxon tax_id="485">Neisseria g...
pathogens. Pilin subunits attach the infecting organism to the surface of
host epithelial cells. They are synthesised as prepilin subunits, which
differ from mature pilin by virtue of containing a 6-8 residue leader
peptide consisting of charged amino acids. Mature type IV pilins also
contain a methylated N-terminal phenylalanine residue.</p>
<p> The bifunctional enzyme prepilin peptidase (PilD) from <taxon tax_id="287">Pseudomonas aeruginosa</taxon> is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl tra...
</abstract>
<class_list>
<classification id="GO:0004190" class_type="GO">
<category>Molecular Function</category>
<description>aspartic-type endopeptidase activity</description>
</classification>
<classification id="GO:0016020" class_type="GO">
<category>Cellular Component</category>
<description>membrane</description>
</classification>
t/data/interpro_relationship.xml view on Meta::CPAN
</taxonomy_distribution>
<sec_list>
<sec_ac acc="IPR014505"/>
<sec_ac acc="IPR018094"/>
</sec_list>
</interpro>
<interpro id="IPR000064" protein_count="4879" short_name="NLP_P60" type="Domain">
<name>NLP/P60</name>
<abstract>
<p>The <taxon tax_id="562">Escherichia coli</taxon> NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the ...
<p>The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from <taxon tax_id="1421">Bacillus sphaer...
</p>
</abstract>
<example_list>
<example>
<db_xref db="SWISSPROT" dbkey="P03729"/>
</example>
<example>
<db_xref db="SWISSPROT" dbkey="P0AFV4"/>
</example>
</example_list>
t/data/interpro_relationship.xml view on Meta::CPAN
<taxon_data name="Metazoa" proteins_count="101"/>
</taxonomy_distribution>
<sec_list>
<sec_ac acc="IPR015531"/>
</sec_list>
</interpro>
<interpro id="IPR000069" protein_count="3797" short_name="Env_glycoprot_M_flavivir" type="Domain">
<name>Envelope glycoprotein M, flavivirus</name>
<abstract>
<p>Flaviviruses are small enveloped viruses with virions comprised of
three proteins called C, M and E [<cite idref="PUB00003522"/>, <cite idref="PUB00000171"/>, <cite idref="PUB00003500"/>]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for t...
</abstract>
<class_list>
<classification id="GO:0019028" class_type="GO">
<category>Cellular Component</category>
<description>viral capsid</description>
</classification>
<classification id="GO:0019058" class_type="GO">
<category>Biological Process</category>
<description>viral infectious cycle</description>
</classification>
t/data/interpro_relationship.xml view on Meta::CPAN
<taxon_data name="Fungi" proteins_count="84"/>
<taxon_data name="Arthropoda" proteins_count="1"/>
<taxon_data name="Plastid Group" proteins_count="690"/>
<taxon_data name="Green Plants" proteins_count="690"/>
<taxon_data name="Metazoa" proteins_count="85"/>
</taxonomy_distribution>
</interpro>
<interpro id="IPR000071" protein_count="24951" short_name="Lentvrl_matrix_N" type="Domain">
<name>Immunodeficiency lentiviral matrix, N-terminal</name>
<abstract>
<p>Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes [<cite idref="PUB00014063"/>]. Matrix proteins are produced ...
<p>This entry represents matrix proteins from immunodeficiency lentiviruses, such as <taxon tax_id="12721">Human immunodeficiency virus</taxon> (HIV) and <taxon tax_id="11723">Simian immunodeficiency virus</taxon> (SIV-cpz) [<cite idref="PUB00016321"...
</abstract>
<class_list>
<classification id="GO:0005198" class_type="GO">
<category>Molecular Function</category>
<description>structural molecule activity</description>
</classification>
</class_list>
<example_list>
<example>
t/data/interpro_short.xml view on Meta::CPAN
<publication id="PUB00000355">
<author_list>Friezner Degen S.J., Stuart L.A., Han S., Jamison C.S.</author_list>
<title>Characterization of the mouse cDNA and gene coding for a hepatocyte growth factor-like protein: expression during development.</title>
<db_xref db="MEDLINE" dbkey="92002017"/>
<journal>Biochemistry</journal>
<location firstpage="9781" lastpage="9791" volume="30"/>
<year>1991</year>
</publication>
<publication id="PUB00002776">
<author_list>Miyazawa K., Shimomura T., Kitamura A., Kondo J., Morimoto Y., Kitamura N.</author_list>
<title>Molecular cloning and sequence analysis of the cDNA for a human serine protease reponsible for activation of hepatocyte growth factor. Structural similarity of the protease precursor to blood coagulation factor XII.</title>
<db_xref db="MEDLINE" dbkey="93252878"/>
<journal>J. Biol. Chem.</journal>
<location firstpage="10024" lastpage="10028" volume="268"/>
<year>1993</year>
</publication>
</pub_list>
<member_list>
<db_xref protein_count="91" db="PRINTS" dbkey="PR00018" name="KRINGLE"/>
<db_xref protein_count="126" db="PROFILE" dbkey="PS50070" name="KRINGLE_2"/>
<db_xref protein_count="161" db="PROSITE" dbkey="PS00021" name="KRINGLE_1"/>
t/data/interpro_short.xml view on Meta::CPAN
<db_xref protein_count="75" db="PRINTS" dbkey="PR00545" name="RETINOIDXR"/>
</member_list>
</interpro>
<interpro id="IPR000004" type="Domain" short_name="SapB" protein_count="135">
<name>Saposin type B</name>
<abstract>
Saposins are small lysosomal proteins that serve as activators of various
lysosomal lipid-degrading enzymes <cite idref="PUB00005747"/>. They probably act by isolating the
lipid substrate from the membrane surroundings, thus making it more
accessible to the soluble degradative enzymes. All <taxon tax_id="40674">mammalian</taxon> saposins
are synthesized as a single precursor molecule (prosaposin) which contains
four Saposin-B domains, yielding the active saposins after proteolytic
cleavage, and two Saposin-A domains that are removed in the activation
reaction.
The Saposin-B domains also occur in other
proteins, many of them active in the lysis of membranes <cite idref="PUB00005721"/>, <cite idref="PUB00005765"/>. <p>The 3D-structure of NK-lysin has recently been determined <cite idref="PUB00005798"/> and found to
be very different from the one predicted in <cite idref="PUB00005747"/>.
A group of <taxon tax_id="3193">plant</taxon> aspartic proteases related to cyprosin. These proteins
have a peculiar SAP-B domain where the two halves are 'swapped' <cite idref="PUB00005742"/>.</p>
</abstract>
<example_list>
t/data/interpro_short.xml view on Meta::CPAN
</member_list>
<external_doc_list>
<db_xref db="BLOCKS" dbkey="IPB000005"/>
<db_xref db="PDOC" dbkey="PDOC00040"/>
</external_doc_list>
</interpro>
<interpro id="IPR000010" type="Family" short_name="Cystatin" protein_count="219">
<name>Cysteine proteases inhibitor</name>
<abstract>
Members of this family are inhibitors of cysteine proteases <cite idref="PUB00005324"/>, <cite idref="PUB00003412"/>, <cite idref="PUB00001614"/>, which are found in the tissues and body fluids of <taxon tax_id="33208">animals</taxon>, as well as in...
<p>Kininogen is the precursor of the active peptide bradykinin that plays a role in blood coagulation by helping to position optimally prekallikrein and factor XI next to factor XII. They are also inhibitors of cysteine protease...
</abstract>
<class_list>
<classification id="GO:0004869" class_type="GO">
<category>Molecular Function</category>
<description>cysteine protease inhibitor</description>
</classification>
</class_list>
<example_list>
<example>
<db_xref dbkey="P09229" db="SWISS"/>Cysteine proteinase inhibitor of rice
t/data/omim_genemap_test view on Meta::CPAN
1.34|1|1|95|1p36.3-p36.2|PLOD, PLOD1|P|Procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase)||153454|REa, A|||Ehlers-Danlos syndrome, type VI, 225400 (3)| | |4(Plod)|Hautala (1992)
1.35|9|15|96|1p36.3-p36.2|SCNN1D|P|Sodium channel, voltage-gated, type I, delta polypeptide||601328|A|||| | ||
1.36|12|18|98|1p36.3-p36.2|TNFRSF1B, TNFR2, TNFBR|C|Tumor necrosis factor receptor superfamily, member 1B||191191|REa, A, Fd|||| | |4(Tnfr1)|
1.37|12|14|98|1p36.3-p36.2|TNFRSF14, HVEM, TR2|P|Tumor necrosis factor receptor superfamily, member 14 (herpesvirus|entry mediator)|602746|A|||| | ||
1.38|11|18|96|1p36.3-p34.1|C1QA|C|Complement component-1, q subcomponent, alpha polypeptide||120550|REa, REb|||C1q deficiency, type A (3)| | ||
1.39|11|18|96|1p36.3-p34.1|C1QB|C|Complement component-1, q subcomponent, beta polypeptide||120570|REa, REb|||C1q deficiency, type B (3)| | |(C1qb)|
1.40|11|18|96|1p36.3-p34.1|C1QG|P|Complement component-1, q subcomponent, gamma polypeptide||120575|REn, REb|||C1q deficiency, type C (3)| | ||
1.41|6|18|97|1p36.2|FRAP1|P|FK506 binding protein 12-rapamycin associated protein-1||601231|R, A|||| | ||
1.42|12|11|01|1p36.2|KIF1B, CMT2A|C|Kinesin family member 1B||605995|Fd, REc, D|||Charcot-Marie-Tooth neuropathy, type 2A, 118210 (3)| | |4(Kif1b)|
1.43|6|2|94|1p36.2|NPPA, PND, ANP|C|Pronatriodilatin (atrial natriuretic peptide)||108780|REa, A, H|||| | |4(Pnd)|
1.44|5|9|95|1p36.2|NPPB, BNP|C|Natriuretic peptide precursor B||600295|H, REa, A, REn|||| | |4(Nppb)|
1.45|8|4|99|1p36.2|SLC2A5, GLUT5|C|Solute carrier family 2 (facilitated glucose transporter), member 5||138230|REa, A, REc, R|||| | ||
1.46|4|10|90|1p36.2-p36.13|PGD|C|6-phosphogluconate dehydrogenase||172200|F, S|||| | |4(Pgd)|
1.47|2|19|96|1p36.2-p36.12|PAX7|C|Paired box homeotic gene-7||167410|Psh, H, REa, A|fused with FKHR in rhabdomyosarcoma||Rhabdomyosarcoma, alveolar, 268220 (3)| | |4(Pax7)|
1.48|4|19|01|1p36.2-p36.1|DNB5|P|Deleted in neuroblastoma 5||605763|REc|||| | ||
1.49|3|24|88|1p36.2-p36.1|FGR, SRC2|P|Oncogene FGR||164940|A, REb, REa, Fd|same as SRC2||| | |4(Fgr)|
1.50|9|22|97|1p36.2-p36.1|GLC3B|P|Glaucoma 3, primary infantile, B||600975|Fd|||Glaucoma 3, primary infantile, B (2)| | ||
1.51|9|7|00|1p36.2-p36.1|RERE|P|RE repeats-encoding gene||605226|REc, Ch|||| | ||
1.52|6|19|00|1p36.2-p36.1|ZNF151|P|Zinc finger protein-151||604084|A|||| | ||
1.53|1|1|95|1p36.2-p35|CDA|C|Cytidine deaminase||123920|A, Psh|||| | ||
1.54|10|22|92|1p36.2-p34|EPB41, EL1|C|Erythrocyte surface protein band 4.1||130500|F, REb|||Elliptocytosis-1 (3)| | |4(Elp1)|
t/data/omim_genemap_test_nolinebreak view on Meta::CPAN
1.34|1|1|95|1p36.3-p36.2|PLOD, PLOD1|P|Procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase)||153454|REa, A|||Ehlers-Danlos syndrome, type VI, 225400 (3)| | |4(Plod)|Hautala (1992)
1.35|9|15|96|1p36.3-p36.2|SCNN1D|P|Sodium channel, voltage-gated, type I, delta polypeptide||601328|A|||| | ||
1.36|12|18|98|1p36.3-p36.2|TNFRSF1B, TNFR2, TNFBR|C|Tumor necrosis factor receptor superfamily, member 1B||191191|REa, A, Fd|||| | |4(Tnfr1)|
1.37|12|14|98|1p36.3-p36.2|TNFRSF14, HVEM, TR2|P|Tumor necrosis factor receptor superfamily, member 14 (herpesvirus|entry mediator)|602746|A|||| | ||
1.38|11|18|96|1p36.3-p34.1|C1QA|C|Complement component-1, q subcomponent, alpha polypeptide||120550|REa, REb|||C1q deficiency, type A (3)| | ||
1.39|11|18|96|1p36.3-p34.1|C1QB|C|Complement component-1, q subcomponent, beta polypeptide||120570|REa, REb|||C1q deficiency, type B (3)| | |(C1qb)|
1.40|11|18|96|1p36.3-p34.1|C1QG|P|Complement component-1, q subcomponent, gamma polypeptide||120575|REn, REb|||C1q deficiency, type C (3)| | ||
1.41|6|18|97|1p36.2|FRAP1|P|FK506 binding protein 12-rapamycin associated protein-1||601231|R, A|||| | ||
1.42|12|11|01|1p36.2|KIF1B, CMT2A|C|Kinesin family member 1B||605995|Fd, REc, D|||Charcot-Marie-Tooth neuropathy, type 2A, 118210 (3)| | |4(Kif1b)|
1.43|6|2|94|1p36.2|NPPA, PND, ANP|C|Pronatriodilatin (atrial natriuretic peptide)||108780|REa, A, H|||| | |4(Pnd)|
1.44|5|9|95|1p36.2|NPPB, BNP|C|Natriuretic peptide precursor B||600295|H, REa, A, REn|||| | |4(Nppb)|
1.45|8|4|99|1p36.2|SLC2A5, GLUT5|C|Solute carrier family 2 (facilitated glucose transporter), member 5||138230|REa, A, REc, R|||| | ||
1.46|4|10|90|1p36.2-p36.13|PGD|C|6-phosphogluconate dehydrogenase||172200|F, S|||| | |4(Pgd)|
1.47|2|19|96|1p36.2-p36.12|PAX7|C|Paired box homeotic gene-7||167410|Psh, H, REa, A|fused with FKHR in rhabdomyosarcoma||Rhabdomyosarcoma, alveolar, 268220 (3)| | |4(Pax7)|
1.48|4|19|01|1p36.2-p36.1|DNB5|P|Deleted in neuroblastoma 5||605763|REc|||| | ||
1.49|3|24|88|1p36.2-p36.1|FGR, SRC2|P|Oncogene FGR||164940|A, REb, REa, Fd|same as SRC2||| | |4(Fgr)|
1.50|9|22|97|1p36.2-p36.1|GLC3B|P|Glaucoma 3, primary infantile, B||600975|Fd|||Glaucoma 3, primary infantile, B (2)| | ||
1.51|9|7|00|1p36.2-p36.1|RERE|P|RE repeats-encoding gene||605226|REc, Ch|||| | ||
1.52|6|19|00|1p36.2-p36.1|ZNF151|P|Zinc finger protein-151||604084|A|||| | ||
1.53|1|1|95|1p36.2-p35|CDA|C|Cytidine deaminase||123920|A, Psh|||| | ||
1.54|10|22|92|1p36.2-p34|EPB41, EL1|C|Erythrocyte surface protein band 4.1||130500|F, REb|||Elliptocytosis-1 (3)| | |4(Elp1)|
t/data/phyloxml_examples.xml view on Meta::CPAN
</clade>
<clade>
<taxonomy>
<id provider="NCBI">44689</id>
<code>DICDI</code>
<scientific_name>Dictyostelium discoideum</scientific_name>
</taxonomy>
<sequence>
<symbol>RT4I1</symbol>
<accession source="UniProtKB">Q54II4</accession>
<name>Reticulon-4-interacting protein 1 homolog, mitochondrial precursor</name>
<mol_seq>MKGILLNGYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRK</mol_seq>
<annotation ref="GO:0008270"/>
<annotation ref="GO:0016491"/>
</sequence>
</clade>
</clade>
<clade>
<taxonomy>
<id provider="NCBI">1488</id>
<code>CLOAB</code>
t/data/pre_rel9.swiss view on Meta::CPAN
ID GCDH_CAEEL STANDARD; PRT; 409 AA.
AC Q20772;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 30-MAY-2006, entry version 44.
DE Probable glutaryl-CoA dehydrogenase, mitochondrial precursor
DE (EC 1.3.99.7) (GCD).
GN ORFNames=F54D5.7;
OS Caenorhabditis elegans.
OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC Rhabditidae; Peloderinae; Caenorhabditis.
OX NCBI_TaxID=6239;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bristol N2;
RX MEDLINE=99069613; PubMed=9851916; DOI=10.1126/science.282.5396.2012;
t/data/rel9.swiss view on Meta::CPAN
ID GCDH_CAEEL Reviewed; 409 AA.
AC Q20772;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 31-OCT-2006, entry version 47.
DE Probable glutaryl-CoA dehydrogenase, mitochondrial precursor
DE (EC 1.3.99.7) (GCD).
GN ORFNames=F54D5.7;
OS Caenorhabditis elegans.
OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC Rhabditidae; Peloderinae; Caenorhabditis.
OX NCBI_TaxID=6239;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bristol N2;
RX MEDLINE=99069613; PubMed=9851916; DOI=10.1126/science.282.5396.2012;
t/data/sequencefamily.dat view on Meta::CPAN
PRGPCACGCG CGSLHTDGDK AFVDFLSDEI KEERKIQKHK TLPKMSGGWE LELNGTEAKL
VRKVAGEKIT VTFNINNSIP PTFDGEEEPS QGQKVEEQEP ELTSTPNFVV EVIKNDDGKK
ALVLDCHYPE DEVGQEDEAE SDIFSIREVS FQSTGESEWK DTNYTLNTDS LDWALYDHLM
DFLADRGVDN TFADELVELS TALEHQEYIT FLEDLKSFVK SQ
//
ID ACON_CAEEL STANDARD; PRT; 788 AA.
AC P34455;
DT 01-FEB-1994 (Rel. 28, Created)
DT 01-FEB-1994 (Rel. 28, Last sequence update)
DT 15-JUL-1999 (Rel. 38, Last annotation update)
DE Probable aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)
DE (Citrate hydro-lyase) (Aconitase).
GN F54H12.1.
OS Caenorhabditis elegans.
OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC Rhabditidae; Peloderinae; Caenorhabditis.
OX NCBI_TaxID=6239;
RN [1]
RP SEQUENCE FROM N.A.
RC STRAIN=BRISTOL N2;
RX MEDLINE=94150718; PubMed=7906398;
t/data/so.obo view on Meta::CPAN
name: U2_intron
def: "A major type of spliceosomal intron spliced by the U2 spliceosome, that includes U1, U2, U4/U6 and U5 snRNAs." [PMID:9428511]
comment: May have either GT-AG or AT-AG 5' and 3' boundaries.
is_a: SO:0000662 ! spliceosomal_intron
[Term]
id: SO:0000185
name: primary_transcript
def: "The primary (initial, unprocessed) transcript; includes five_prime_clip (SO:0000555), five_prime_untranslated_region (SO:0000204), open reading frames (SO:0000236), introns (SO:0000188) and three_prime_ untranslated_region (three_prime_UTR), an...
subset: SOFA
synonym: "precursor_RNA" RELATED []
is_a: SO:0000673 ! transcript
[Term]
id: SO:0000186
name: LTR_retrotransposon
def: "A retrotransposon flanked by long terminal repeat sequences." [SO:ke]
is_a: SO:0000180 ! retrotransposon
[Term]
id: SO:0000187
t/data/so.obo view on Meta::CPAN
id: SO:0000275
name: snoRNA
def: "Small nucleolar RNAs (snoRNAs) are involved in the processing and modification of rRNA in the nucleolus. There are two main classes of snoRNAs: the box C/D class, and the box H/ACA class. U3 snoRNA is a member of the box C/D class. Indeed, the ...
subset: SOFA
synonym: "small_nucleolar_RNA" RELATED []
is_a: SO:0000655 ! ncRNA
[Term]
id: SO:0000276
name: miRNA
def: "Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. miRNAs are produced from precursor molecules (SO:0000647) that can form local hairpin strcutures, which ordinarily are processed (via the Dicer pathway) such that a ...
subset: SOFA
synonym: "micro_RNA" RELATED []
is_a: SO:0000370 ! small_regulatory_ncRNA
[Term]
id: SO:0000277
name: transcript_by_bound_factor
is_a: SO:0000237 ! transcript_attribute
[Term]
t/data/so.obo view on Meta::CPAN
[Term]
id: SO:0000374
name: ribozyme
def: "An RNA with catalytic activity." [SO:ma]
subset: SOFA
is_a: SO:0000372 ! enzymatic_RNA
[Term]
id: SO:0000375
name: rRNA_5.8S
def: "5.8S ribosomal RNA (5.8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA ma...
subset: SOFA
synonym: "5.8S_rRNA" RELATED []
is_a: SO:0000252 ! rRNA
[Term]
id: SO:0000376
name: RNA_6S
def: "A small (184-nt in E. coli) RNA that forms a hairpin type structure. 6S RNA associates with RNA polymerase in a highly specific manner. 6S RNA represses expression from a sigma70-dependent promoter during stationary phase." [http://www.sanger.a...
synonym: "6S_RNA" RELATED []
is_a: SO:0000370 ! small_regulatory_ncRNA
t/data/so.obo view on Meta::CPAN
[Term]
id: SO:0000384
name: OxyS_RNA
def: "A small untranslated RNA which is induced in response to oxidative stress in Escherichia coli. Acts as a global regulator to activate or repress the expression of as many as 40 genes, including the fhlA-encoded transcriptional activator and the...
is_a: SO:0000370 ! small_regulatory_ncRNA
[Term]
id: SO:0000385
name: RNase_MRP_RNA
def: "The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In t...
subset: SOFA
is_a: SO:0000372 ! enzymatic_RNA
[Term]
id: SO:0000386
name: RNase_P_RNA
def: "The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterised activity is the generation of mature 5 prime ends of tRNAs by ...
subset: SOFA
is_a: SO:0000374 ! ribozyme
[Term]
id: SO:0000387
name: RprA_RNA
def: "Translational regulation of the stationary phase sigma factor RpoS is mediated by the formation of a double-stranded RNA stem-loop structure in the upstream region of the rpoS messenger RNA, occluding the translation initiation site. Clones car...
is_a: SO:0000370 ! small_regulatory_ncRNA
[Term]
t/data/so.obo view on Meta::CPAN
is_a: SO:0000400 ! sequence_attribute
[Term]
id: SO:0000402
name: enhancer_attribute
is_a: SO:0000401 ! gene_attribute
[Term]
id: SO:0000403
name: U14_snRNA
def: "U14 small nucleolar RNA (U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a dif...
subset: SOFA
is_a: SO:0000274 ! snRNA
[Term]
id: SO:0000404
name: vault_RNA
def: "A family of RNAs are found as part of the enigmatic vault ribonuceoprotein complex. The complex consists of a major vault protein (MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been sugges...
subset: SOFA
is_a: SO:0000655 ! ncRNA
t/data/so.obo view on Meta::CPAN
relationship: part_of SO:0000233 ! processed_transcript
[Term]
id: SO:0000554
name: assortment_derived_deficiency_plus_duplication
is_obsolete: true
[Term]
id: SO:0000555
name: five_prime_clip
def: "5' most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html#line_types]
synonym: "five_prime_-clip" RELATED []
is_a: SO:0000303 ! clip
[Term]
id: SO:0000556
name: five_prime_D_recombination_signal_sequence
def: "Recombination signal of an immunoglobulin/T-cell receptor gene, including the 5' D-nonamer (SO:0000497), 5' D-spacer (SO:0000498), and 5' D-heptamer (SO:0000396) in 5' of the D-region of a D-gene, or in 5' of the D-region of DJ-gene." [http://i...
synonym: "5'RS" RELATED []
synonym: "five_prime_D-recombination_signal_sequence" RELATED []
is_a: SO:0000492 ! D_gene_recombination_feature
[Term]
id: SO:0000557
name: three_prime_clip
def: "3'-most region of a precursor transcript that is clipped off during processing." [http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html#line_types]
synonym: "3'-clip" RELATED []
is_a: SO:0000303 ! clip
[Term]
id: SO:0000558
name: C_cluster
def: "Genomic DNA of immunoglobulin/T-cell receptor gene including more than one C-gene." [http://imgt.cines.fr/ligmdb/LIGMlect?query=7#C-CLUSTER]
synonym: "C-CLUSTER" RELATED []
is_a: SO:0000482 ! vertebrate_immunoglobulin_T_cell_receptor_gene_cluster
t/data/so.obo view on Meta::CPAN
id: SO:0000586
name: tmRNA_primary_transcript
def: "A primary transcript encoding a tmRNA (SO:0000584)." [SO:ke]
synonym: "10Sa_RNA_primary_transcript" RELATED []
synonym: "ssrA_RNA_primary_transcript" RELATED []
is_a: SO:0000483 ! nc_primary_transcript
[Term]
id: SO:0000587
name: group_I_intron
def: "Group I catalytic introns are large self-splicing ribozymes. They catalyse their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to ess...
subset: SOFA
is_a: SO:0000188 ! intron
[Term]
id: SO:0000588
name: autocatalytically_spliced_intron
def: "A self spliced intron." [SO:ke]
subset: SOFA
is_a: SO:0000188 ! intron
is_a: SO:0000374 ! ribozyme
t/data/so.obo view on Meta::CPAN
is_a: SO:0000252 ! rRNA
[Term]
id: SO:0000651
name: large_subunit_rRNA
is_a: SO:0000252 ! rRNA
[Term]
id: SO:0000652
name: rRNA_5S
def: "5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA ...
subset: SOFA
is_a: SO:0000252 ! rRNA
[Term]
id: SO:0000653
name: rRNA_28S
def: "A component of the large ribosomal subunit." [SO:ke]
subset: SOFA
synonym: "23S_rRNA" RELATED []
synonym: "28S_rRNA" RELATED []
t/data/sofa.ontology view on Meta::CPAN
%sofa ; GO:0000001
%feature ; SO:20000000
%chromosome ; GO:0000005
<centromere ; GO:0000004
<telomere ; GO:0000003
%gene ; SO:0000704
<regulatory_region ; SO:0005836
%enhancer ; SO:0000165
%TF_binding_site ; SO:0000235 ; synonym:transcription_factor_binding_site % nucleotide_motif ; SO:0000714
<transcript ; SO:0000673
%primary_transcript ; SO:0000185 ; synonym:precursor_RNA
<exon ; SO:0000147
<intron ; SO:0000188
%noncoding_primary_transcript ; SO:0000483
%micro_RNA_primary_transcript ; SO:0000647
%transfer_RNA_primary_transcript ; SO:0000210
<splice_site ; SO:0000162
%splice_acceptor ; SO:0000164 ; synonym:acceptor_splice_site
%transsplice_acceptor_site ; SO:0000706
%splice_donor ; SO:0000163 ; synonym:donor_splice_site
<transcription_start_site ; SO:0000315
t/data/sv40_small.xml view on Meta::CPAN
<names>
<shortLabel>mouse</shortLabel>
<fullName>Mus musculus</fullName>
</names>
</organism>
<sequence>MTAMEESQSDISLELPLSQETFSGLWKLLPPEDILPSPHCMDDLLLPQDVEEFFEGPSEALRVSGAPAAQDPVTETPGPVAPAPATPWPLSSFVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHSVVVPYEPPEAGSEYTTI...
</proteinInteractor>
<proteinInteractor id="EBI-617321">
<names>
<shortLabel>epor_human</shortLabel>
<fullName>Erythropoietin receptor precursor</fullName>
</names>
<xref>
<primaryRef db="uniprotkb" id="P19235" secondary="epor_human" version="SP_48"/>
<secondaryRef db="go" id="GO:0005887" secondary="C:integral to plasma membrane"/>
<secondaryRef db="go" id="GO:0004900" secondary="F:erythropoietin receptor acti"/>
<secondaryRef db="go" id="GO:0007165" secondary="P:signal transduction"/>
<secondaryRef db="interpro" id="IPR002996" secondary="Cytkn_recept_B/G"/>
<secondaryRef db="interpro" id="IPR009167" secondary="EPO_receptor"/>
<secondaryRef db="interpro" id="IPR003961" secondary="FN_III"/>
<secondaryRef db="interpro" id="IPR008957" secondary="FN_III-like"/>
t/data/swiss.dat view on Meta::CPAN
PRGPCACGCG CGSLHTDGDK AFVDFLSDEI KEERKIQKHK TLPKMSGGWE LELNGTEAKL
VRKVAGEKIT VTFNINNSIP PTFDGEEEPS QGQKVEEQEP ELTSTPNFVV EVIKNDDGKK
ALVLDCHYPE DEVGQEDEAE SDIFSIREVS FQSTGESEWK DTNYTLNTDS LDWALYDHLM
DFLADRGVDN TFADELVELS TALEHQEYIT FLEDLKSFVK SQ
//
ID ACON_CAEEL STANDARD; PRT; 788 AA.
AC P34455;
DT 01-FEB-1994 (Rel. 28, Created)
DT 01-FEB-1994 (Rel. 28, Last sequence update)
DT 15-JUL-1999 (Rel. 38, Last annotation update)
DE Probable aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)
DE (Citrate hydro-lyase) (Aconitase).
GN F54H12.1.
OS Caenorhabditis elegans.
OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC Rhabditidae; Peloderinae; Caenorhabditis.
OX NCBI_TaxID=6239;
RN [1]
RP SEQUENCE FROM N.A.
RC STRAIN=BRISTOL N2;
RX MEDLINE=94150718; PubMed=7906398;
t/data/test.locuslink view on Meta::CPAN
>>26
LOCUSID: 26
LOCUS_CONFIRMED: yes
LOCUS_TYPE: gene with protein product, function known or inferred
ORGANISM: Homo sapiens
STATUS: REVIEWED
NM: NM_001091|4501850|na
NP: NP_001082|4501851
CDD: Copper amine oxidase|pfam01179|1775|na|6.883370e+02
PRODUCT: amiloride binding protein 1 precursor
ASSEMBLY: X78212
CONTIG: NT_007914.10|22047859|na|11083771|11092582|+|7|reference
EVID: supported by alignment with mRNA
XM: XM_032220|14745402|na
XP: XP_032220|14745403|na
ACCNUM: X78212|463242|na|na|na
TYPE: g
PROT: CAA55046|463243
ACCNUM: BC014093|15559450|na|na|na
TYPE: m
t/data/test.locuslink view on Meta::CPAN
ACCNUM: U11862|533535|na|na|na
TYPE: m
PROT: AAC50270|533536
ACCNUM: U11863|533537|na|na|na
TYPE: m
PROT: AAB60381|533538
OFFICIAL_SYMBOL: ABP1
OFFICIAL_GENE_NAME: amiloride binding protein 1 (amine oxidase (copper-containing))
ALIAS_SYMBOL: DAO
ALIAS_SYMBOL: AOC1
PREFERRED_PRODUCT: amiloride binding protein 1 precursor
SUMMARY: Summary: This gene encodes a membrane glycoprotein that binds amiloride, a diuretic that acts by closing epithelial sodium ion channels. Experimental evidence indicates, however, that the formation of an amiloride sensitive, sodium channel r...
CHR: 7
STS: RH71199|7|8014|na|seq_map|epcr
STS: ABP1|7|32801|ABP1|seq_map|epcr
COMP: 10090|Abp1|6|6 cM|76507|7|ABP1|ncbi_mgd
COMP: 10090|1600012D06Rik|6|6 cM|76507|7|ABP1|ucsc_mgd
ALIAS_PROT: diamine oxidase
ALIAS_PROT: Amiloride-binding protein-1
UNIGENE: Hs.75741
BUTTON: unigene.gif
t/data/testdbaccnums.out view on Meta::CPAN
Length = 258
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 45 LMFDA 49
>sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 precursor (Glutamate
receptor KA-2) (KA2) (Excitatory amino acid receptor 2)
(EAA2)
pir||I57936 glutamate receptor subunit - human
gb|AAB22591.1| (S40369) glutamate receptor subunit; EAA2; excitatory amino acid
receptor 2 [Homo sapiens]
Length = 980
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
t/data/testdbaccnums.out view on Meta::CPAN
Score = 16.8 bits (32), Expect = 2880
Identities = 4/5 (80%), Positives = 5/5 (100%)
Query: 2 MFDAN 6
+FDAN
Sbjct: 296 LFDAN 300
>gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiation factor 2
precursor; IF-2mt [Homo sapiens]
sp|P46199|IF2M_HUMAN Translation initiation factor IF-2, mitochondrial precursor
(IF-2Mt) (IF-2(Mt))
pir||A55628 translation initiation factor IF-2 precursor, mitochondrial - human
gb|AAA67038.1| (L34600) initiation factor 2 [Homo sapiens]
gb|AAM14617.1|AF494407_1 (AF494407) mitochondrial translation-initiation factor 2 [Homo
sapiens]
gb|AAM70196.1| (AF495546) translation initiation factor 2 [Homo sapiens]
Length = 727
Score = 20.6 bits (41), Expect = 204
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 1 LMFDAN 6
t/data/testdbaccnums.out view on Meta::CPAN
Length = 258
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 1 LMFDA 5
LMFDA
Sbjct: 45 LMFDA 49
>gi|7|sp|Q16478|GLK5_HUMAN Glutamate receptor, ionotropic kainate 5 precursor (Glutamate
receptor KA-2) (KA2) (Excitatory amino acid receptor 2)
(EAA2)
pir||I57936 glutamate receptor subunit - human
gb|AAB22591.1| (S40369) glutamate receptor subunit; EAA2; excitatory amino acid
receptor 2 [Homo sapiens]
Length = 980
Score = 20.6 bits (41), Expect = 204
Identities = 5/5 (100%), Positives = 5/5 (100%)
t/data/testdbaccnums.out view on Meta::CPAN
Score = 16.8 bits (32), Expect = 2880
Identities = 4/5 (80%), Positives = 5/5 (100%)
Query: 2 MFDAN 6
+FDAN
Sbjct: 296 LFDAN 300
>gi|10|gnl|db1|NP_002444.1 (NM_002453) mitochondrial translational initiation factor 2
precursor; IF-2mt [Homo sapiens]
sp|P46199|IF2M_HUMAN Translation initiation factor IF-2, mitochondrial precursor
(IF-2Mt) (IF-2(Mt))
pir||A55628 translation initiation factor IF-2 precursor, mitochondrial - human
gb|AAA67038.1| (L34600) initiation factor 2 [Homo sapiens]
gb|AAM14617.1|AF494407_1 (AF494407) mitochondrial translation-initiation factor 2 [Homo
sapiens]
gb|AAM70196.1| (AF495546) translation initiation factor 2 [Homo sapiens]
Length = 727
Score = 20.6 bits (41), Expect = 204
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 1 LMFDAN 6
t/data/tol-2010-02-18.nhx view on Meta::CPAN
(((aquifex[&&NHX:TOL=59615],calderobacterium[&&NHX:TOL=59616],hydrogenobacter[&&NHX:TOL=59617],thermocrinis[&&NHX:TOL=59618],hydrogenothermus[&&NHX:TOL=59619],persephonella[&&NHX:TOL=59620],sulfurihydrogenibium[&&NHX:TOL=59621],balnearium[&&NHX:TOL=5...
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