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Bio/Event/EventHandlerI.pm  view on Meta::CPAN

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=head2 SAX methods
 
=cut
 
=head2 start_document
 
 Title   : start_document
 Usage   : $resultObj = $parser->start_document();
 Function: Receive notification of the beginning of a document (the
           input file of a parser). The parser will invoke this method
           only once, before any other event callbacks.
 
           Usually, a handler will reset any internal state structures
           when this method is called.
 
 Returns : none
 Args    : none
 
 
=cut

scripts/DB/bp_biofetch_genbank_proxy.pl  view on Meta::CPAN

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use constant CACHE_LOCATION => '/usr/tmp/dbfetch_cache';
use constant MAX_SIZE   => 100_000_000;  # 100 megs, roughly
use constant CACHE_DEPTH => 4;
use constant EXPIRATION => "1 week";
use constant PURGE      => "1 hour";
 
%MAPPING = (genbank => {db=>'nucleotide',
                        rettype => 'gb'},
            genpep  => {db=>'protein',
                        rettype => 'gp'});
# we're doing everything in callbacks, so initialize globals.
$BUFFER = '';
%GOT    = ();
 
print header('text/plain');
 
param() or print_usage();
 
my $db     = param('db');
my $style  = param('style');
my $format = param('format');