Bio-SamTools

 view release on metacpan or  search on metacpan

lib/Bio/DB/Bam/Pileup.pm  view on Meta::CPAN

6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
1;
 
=head1 NAME
 
Bio::DB::Bam::Pileup -- Object passed to pileup() callback
 
=head1 SYNOPSIS
 
See L<Bio::DB::Sam/The generic fetch() and pileup() methods> for how
this object is passed to pileup callbacks.
 
=head1 DESCRIPTION
 
A Bio::DB::Bam::Pileup object (or a Bio::DB::Bam::PileupWrapper
object) is passed to the callback passed to the Bio::DB::Sam->pileup()
method for each column in a sequence alignment. The only difference
between the two is that the latter returns the more convenient
Bio::DB::Bam::AlignWrapper objects in response to the alignment()
method, at the cost of some performance loss.



( run in 0.250 second using v1.01-cache-2.11-cpan-0f795438458 )