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bin/geoCancerPrognosticDatasetsRetriever  view on Meta::CPAN

    if (!$data) {
		
		print color ("red"), "\nThe download from GeoDatasets was not successful...\nA GeoDatasets timeout error was detected: current run aborted...\nPlease restart the run...\n", color("reset");
		exit; #abort current run
	}

    #add date & time to current input file download
	my $geo_datasets_file = "$cancer\_cancer_GEO_$current_date_time.txt"; 
    
    open(FH, ">$prog_path/data/$geo_datasets_file") or die "Cannot open file for writing the GDS input:$!\n";
    binmode(FH, ":utf8");
    
    print FH "$data";

    close(FH);
    
    return $geo_datasets_file;
}
############################ SUBROUTINE 6 #######################################################
#This subroutine performs minor formatting of a GEO input file to merge the title and abstract 
#lines together to prevent the regex lines from missing potential keyword hits in the 'title'