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lib/Bio/CIPRES/Job.pm  view on Meta::CPAN

Bio::CIPRES::Job - a CIPRES job class

=head1 SYNOPSIS

    use Bio::CIPRES;

    my $ua  = Bio::CIPRES->new( %args );
    my $job = $ua->submit_job( %params );

    $job->wait(6000) or die "Timeout waiting for job completion";

    warn "Job returned non-zero status" if ($job->exit_code != 0);

    print STDOUT $job->stdout;
    print STDERR $job->stderr;

    $job->delete;

=head1 DESCRIPTION

lib/Bio/CIPRES/Job.pm  view on Meta::CPAN

=item B<poll_interval>

    my $s = $job->poll_interval;

Returns the minimum number of seconds that the client should wait between
status updates. Generally this is called as part of a while loop.

=item B<wait>

    $job->wait($timeout) or die "Timeout waiting for job to finish";

Enters a blocking loop waiting for the job to finish. Takes a single optional
argument of the maximum number of seconds to wait before timing out (default:
no timeout). Returns true if the job finishes or false if the wait times out.

=item B<outputs>

    my @results = $job->outputs(
        name  => 'foo.txt',
        group => 'bar',