GenOOx-Data-File-SAMbwa

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META.json  view on Meta::CPAN

   "name" : "GenOOx-Data-File-SAMbwa",
   "prereqs" : {
      "configure" : {
         "requires" : {
            "ExtUtils::MakeMaker" : "0"
         }
      },
      "runtime" : {
         "requires" : {
            "GenOO::Data::File::SAM::Record" : "0",
            "Modern::Perl" : "0",
            "Moose" : "0",
            "namespace::autoclean" : "0"
         }
      },
      "test" : {
         "requires" : {
            "Moose::Role" : "0",
            "Test::Class::Moose" : "0",
            "Test::Class::Moose::Load" : "0",
            "Test::Class::Moose::Role::AutoUse" : "0",

META.yml  view on Meta::CPAN

  ExtUtils::MakeMaker: '0'
dynamic_config: 0
generated_by: 'Dist::Zilla version 5.043, CPAN::Meta::Converter version 2.150005'
license: perl
meta-spec:
  url: http://module-build.sourceforge.net/META-spec-v1.4.html
  version: '1.4'
name: GenOOx-Data-File-SAMbwa
requires:
  GenOO::Data::File::SAM::Record: '0'
  Modern::Perl: '0'
  Moose: '0'
  namespace::autoclean: '0'
version: 0.0.5

Makefile.PL  view on Meta::CPAN

  "ABSTRACT" => "GenOO framework extension to read SAM files created by the BWA aligner",
  "AUTHOR" => "Emmanouil \"Manolis\" Maragkakis <mns.marag\@gmail.com>",
  "CONFIGURE_REQUIRES" => {
    "ExtUtils::MakeMaker" => 0
  },
  "DISTNAME" => "GenOOx-Data-File-SAMbwa",
  "LICENSE" => "perl",
  "NAME" => "GenOOx::Data::File::SAMbwa",
  "PREREQ_PM" => {
    "GenOO::Data::File::SAM::Record" => 0,
    "Modern::Perl" => 0,
    "Moose" => 0,
    "namespace::autoclean" => 0
  },
  "TEST_REQUIRES" => {
    "Moose::Role" => 0,
    "Test::Class::Moose" => 0,
    "Test::Class::Moose::Load" => 0,
    "Test::Class::Moose::Role::AutoUse" => 0,
    "Test::Class::Moose::Runner" => 0,
    "autodie" => 0
  },
  "VERSION" => "0.0.5",
  "test" => {
    "TESTS" => "t/*.t"
  }
);


my %FallbackPrereqs = (
  "GenOO::Data::File::SAM::Record" => 0,
  "Modern::Perl" => 0,
  "Moose" => 0,
  "Moose::Role" => 0,
  "Test::Class::Moose" => 0,
  "Test::Class::Moose::Load" => 0,
  "Test::Class::Moose::Role::AutoUse" => 0,
  "Test::Class::Moose::Runner" => 0,
  "autodie" => 0,
  "namespace::autoclean" => 0
);

README.md  view on Meta::CPAN

  2. Install dependencies (listed below) from CPAN. [How to install CPAN modules](http://www.cpan.org/modules/INSTALL.html).
  3. Clone the GenOO repository on your machine
     `git clone git@github.com:genoo/GenOOx-Sam-STAR.git`.
  4. To verify that everything works 
     `cd path/to/your/clone/; prove -l t/*.t;`.
  5. In the beginning of your perl script write the following
     `use lib 'path/to/your/clone/lib/'`.

## Dependencies (maybe not exhaustive)
* GenOO
* Modern::Perl
* Moose

## Copyright
Copyright (c) 2013 Emmanouil Maragkakis and Panagiotis Alexiou.

## License
This library is free software and may be distributed under the same terms as perl itself.

This library is distributed in the hope that it will be useful, but **WITHOUT ANY WARRANTY**; without even the implied warranty of merchantability or fitness for a particular purpose.

lib/GenOOx/Data/File/SAMbwa.pm  view on Meta::CPAN

=cut

# Let the code begin...

package GenOOx::Data::File::SAMbwa;
$GenOOx::Data::File::SAMbwa::VERSION = '0.0.5';

#######################################################################
#######################   Load External modules   #####################
#######################################################################
use Modern::Perl;


1;

t/lib/MTCM/AutoUse.pm  view on Meta::CPAN

package MTCM::AutoUse;


#######################################################################
#######################   Load External modules   #####################
#######################################################################
use Modern::Perl;
use autodie;
use Moose::Role;
use namespace::autoclean;


#######################################################################
##########################   Consumed Roles   #########################
#######################################################################
with 'Test::Class::Moose::Role::AutoUse';

t/lib/MTCM/Testable.pm  view on Meta::CPAN

package MTCM::Testable;


#######################################################################
#######################   Load External modules   #####################
#######################################################################
use Modern::Perl;
use autodie;
use Moose::Role;
use namespace::autoclean;


#######################################################################
#################   Required methods and attributes   #################
#######################################################################
requires qw(_init_testable_objects _init_data_for_testable_objects);

t/test_all.t  view on Meta::CPAN

#!/usr/bin/env perl
use Modern::Perl;

use Test::Class::Moose::Load 't/lib/';
use Test::Class::Moose::Runner;

Test::Class::Moose::Runner->new({
	show_timing => 0,
	randomize   => 0,
	statistics  => 1,
})->runtests;