Bio-MUST-Tools-TreeParsing

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META.yml  view on Meta::CPAN

  Bio::MUST::Core::Tree: '0'
  Bio::MUST::Core::Utils: '0'
  Carp: '0'
  File::Basename: '0'
  File::Copy: '0'
  File::Find::Rule: '0'
  File::Spec: '0'
  Getopt::Euclid: '0'
  List::AllUtils: '0'
  List::Compare: '0'
  Modern::Perl: '0'
  Path::Class: '0'
  Smart::Comments: '0'
  Test::Most: '0'
  Tie::IxHash: '0'
  aliased: '0'
  autodie: '0'
  perl: '5.010'
  strict: '0'
  warnings: '0'
version: '0.210200'

Makefile.PL  view on Meta::CPAN

    "Bio::MUST::Core::Tree" => 0,
    "Bio::MUST::Core::Utils" => 0,
    "Carp" => 0,
    "File::Basename" => 0,
    "File::Copy" => 0,
    "File::Find::Rule" => 0,
    "File::Spec" => 0,
    "Getopt::Euclid" => 0,
    "List::AllUtils" => 0,
    "List::Compare" => 0,
    "Modern::Perl" => 0,
    "Path::Class" => 0,
    "Smart::Comments" => 0,
    "Test::Most" => 0,
    "Tie::IxHash" => 0,
    "aliased" => 0,
    "autodie" => 0,
    "strict" => 0,
    "warnings" => 0
  },
  "VERSION" => "0.210200",

Makefile.PL  view on Meta::CPAN

  "Bio::MUST::Core::Tree" => 0,
  "Bio::MUST::Core::Utils" => 0,
  "Carp" => 0,
  "File::Basename" => 0,
  "File::Copy" => 0,
  "File::Find::Rule" => 0,
  "File::Spec" => 0,
  "Getopt::Euclid" => 0,
  "List::AllUtils" => 0,
  "List::Compare" => 0,
  "Modern::Perl" => 0,
  "Path::Class" => 0,
  "Smart::Comments" => 0,
  "Test::Most" => 0,
  "Tie::IxHash" => 0,
  "aliased" => 0,
  "autodie" => 0,
  "strict" => 0,
  "warnings" => 0
);

bin/tree-clan-splitter.pl  view on Meta::CPAN

#!/usr/bin/env perl
# PODNAME: tree-clan-splitter.pl
# ABSTRACT: Extract clans (FASTA files) from trees based on taxonomic filters
# CONTRIBUTOR: Mick VAN VLIERBERGHE <mvanvlierberghe@doct.uliege.be>

use Modern::Perl '2011';
use autodie;

use Smart::Comments '###';
use Getopt::Euclid qw( :vars );

use Carp;
use File::Copy;
use File::Spec;
use Tie::IxHash;
use List::Compare;