Bio-MUST-Apps-TwoScalp

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META.yml  view on Meta::CPAN

  Bio::MUST::Drivers: '0'
  Bio::MUST::Drivers::Blast::Database: '0'
  Bio::MUST::Drivers::Blast::Database::Temporary: '0'
  Bio::MUST::Drivers::ClustalO: '0'
  Bio::MUST::Drivers::Mafft: '0'
  Carp: '0'
  Const::Fast: '0'
  File::Basename: '0'
  Getopt::Euclid: '0'
  List::AllUtils: '0'
  Modern::Perl: '0'
  Moose: '0'
  Path::Class: '0'
  Smart::Comments: '0'
  Test::Most: '0'
  Tie::IxHash: '0'
  aliased: '0'
  autodie: '0'
  feature: '0'
  namespace::autoclean: '0'
  perl: v5.10.0

Makefile.PL  view on Meta::CPAN

    "Bio::MUST::Drivers" => 0,
    "Bio::MUST::Drivers::Blast::Database" => 0,
    "Bio::MUST::Drivers::Blast::Database::Temporary" => 0,
    "Bio::MUST::Drivers::ClustalO" => 0,
    "Bio::MUST::Drivers::Mafft" => 0,
    "Carp" => 0,
    "Const::Fast" => 0,
    "File::Basename" => 0,
    "Getopt::Euclid" => 0,
    "List::AllUtils" => 0,
    "Modern::Perl" => 0,
    "Moose" => 0,
    "Path::Class" => 0,
    "Smart::Comments" => 0,
    "Test::Most" => 0,
    "Tie::IxHash" => 0,
    "aliased" => 0,
    "autodie" => 0,
    "feature" => 0,
    "namespace::autoclean" => 0,
    "strict" => 0,

Makefile.PL  view on Meta::CPAN

  "Bio::MUST::Drivers" => 0,
  "Bio::MUST::Drivers::Blast::Database" => 0,
  "Bio::MUST::Drivers::Blast::Database::Temporary" => 0,
  "Bio::MUST::Drivers::ClustalO" => 0,
  "Bio::MUST::Drivers::Mafft" => 0,
  "Carp" => 0,
  "Const::Fast" => 0,
  "File::Basename" => 0,
  "Getopt::Euclid" => 0,
  "List::AllUtils" => 0,
  "Modern::Perl" => 0,
  "Moose" => 0,
  "Path::Class" => 0,
  "Smart::Comments" => 0,
  "Test::Files" => 0,
  "Test::Most" => 0,
  "Tie::IxHash" => 0,
  "aliased" => 0,
  "autodie" => 0,
  "feature" => 0,
  "namespace::autoclean" => 0,

bin/two-scalp.pl  view on Meta::CPAN

#!/usr/bin/env perl
# PODNAME: two-scalp.pl
# ABSTRACT: Align or re-align sequences using various strategies
# CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
# CONTRIBUTOR: Valerian LUPO <valerian.lupo@doct.uliege.be>

use Modern::Perl '2011';
use Getopt::Euclid qw(:vars);

## no critic (RequireLocalizedPunctuationVars)
BEGIN{
    $ENV{Smart_Comments} = $ARGV_verbosity
        ? join q{ }, map { '#' x (2 + $_) } 1..$ARGV_verbosity
        : q{}
    ;
}
## use critic